AT5G38700

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016068
Physical Location & Seq
Forward (+)
15489593 .. 15490745
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38700.1

Sequence Viewer

Length: 549 bp
ATGGGGGAATCAAAGAAGAAAAGCAGATCAATGGCAACACAAAGAGCTTGGAGTCTTGTGAGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAATCTTCAAGAGATGGCACATGTTTGAGCTCCGTAACTTGTTCTCCAAGCATCTCAAAGCCCTAAATCATCATAACAGCGTTGACAACAACCGTTATCTCACACGTTACGGCGAGAAACAGCTTTCTTTCGACGAGACGCCAATATTTAACGTTAAAATGCATCGCCCTACATCCATGAGGTTCCTCTTGCCTTGCATTGCTCGTCCCGCTGACTTTGACTACGATTTCGAATTGGATGGTACTCAAGATGATACTGACGATGTTAGATCCTACGGCTACTACGATGGTTCTTGTAATGAGAAATGTGATCGTTCGGCGAATGATGATCAAGAAGAGGAAGAAGAGAAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGCAGATGAAGTTACAGAGGCAAATCTCTTATTTGCAATACAAAGAACACAACGACGTCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

182

Amino Acids

21.67

Weight (kDa)

6.32

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 148 - 178 2.2e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 543
AciI CCGC 1 cut(s) 300
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 354
AcyI GRCGYC 2 cut(s) 230, 540
AfaI GTAC 1 cut(s) 334
AflIII ACRYGT 2 cut(s) 111, 194
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 3 cut(s) 47, 121, 214
AluI AGCT 3 cut(s) 47, 121, 214
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 354
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AsuII TTCGAA 1 cut(s) 321
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 3 cut(s) 99, 323, 371
BceAI ACGGC 2 cut(s) 217, 382
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 275
BmsI GCATC 2 cut(s) 151, 262
BplI GAGNNNNNCTC 2 cut(s) 52, 84
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 321
BsaHI GRCGYC 2 cut(s) 230, 540
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse3DI GCAATG 2 cut(s) 288, 468
BseGI GGATG 2 cut(s) 263, 334
BseMI GCAATG 2 cut(s) 288, 468
BseRI GAGGAG 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 4 cut(s) 26, 359, 400, 418
BspACI CCGC 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 288, 468
BssMI GATC 4 cut(s) 26, 359, 400, 418
BssNI GRCGYC 2 cut(s) 230, 540
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 3 cut(s) 75, 420, 429
BstACI GRCGYC 2 cut(s) 230, 540
BstBI TTCGAA 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 263, 334
BstKTI GATC 4 cut(s) 29, 362, 403, 421
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 26, 359, 400, 418
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 263, 334
CseI GACGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 333
CviAII CATG 2 cut(s) 112, 268
CviJI RGCY 6 cut(s) 47, 68, 121, 152, 214, 369
CviKI_1 RGCY 6 cut(s) 47, 68, 121, 152, 214, 369
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 474
DpnI GATC 4 cut(s) 28, 361, 402, 420
DpnII GATC 4 cut(s) 26, 359, 400, 418
Eam1104I CTCTTC 3 cut(s) 75, 420, 429
EarI CTCTTC 3 cut(s) 75, 420, 429
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 2 cut(s) 115, 271
FaiI YATR 6 cut(s) 76, 113, 165, 269, 483, 547
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 111, 267
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 418
FokI GGATG 2 cut(s) 250, 341
FriOI GRGCYC 1 cut(s) 123
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 2 cut(s) 230, 540
Hin1II CATG 2 cut(s) 115, 271
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 8, 52, 93
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 100, 338, 422
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 3 cut(s) 227, 542, 545
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 3 cut(s) 196, 243, 540
HpyCH4V TGCA 3 cut(s) 253, 288, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 3 cut(s) 196, 243, 540
Hsp92I GRCGYC 2 cut(s) 230, 540
Hsp92II CATG 2 cut(s) 115, 271
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 4 cut(s) 26, 359, 400, 418
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 126
LweI GCATC 2 cut(s) 151, 262
MaeII ACGT 3 cut(s) 196, 243, 540
MaeIII GTNAC 3 cut(s) 125, 197, 495
MalI GATC 4 cut(s) 28, 361, 402, 420
MboI GATC 4 cut(s) 26, 359, 400, 418
MboII GAAGA 7 cut(s) 28, 62, 88, 93, 437, 443, 446
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 323
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 264, 287, 421, 454, 495
Mph1103I ATGCAT 1 cut(s) 255
MseI TTAA 2 cut(s) 240, 246
MspA1I CMGCKG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 4 cut(s) 26, 359, 400, 418
NlaIII CATG 2 cut(s) 115, 271
NlaIV GGNNCC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 321
PciI ACATGT 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 2 cut(s) 8, 93
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PscI ACATGT 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 123
Psp1406I AACGTT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 240, 246
Sau3AI GATC 4 cut(s) 26, 359, 400, 418
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 123
SetI ASST 8 cut(s) 49, 91, 123, 199, 216, 246, 275, 543
SfaNI GCATC 2 cut(s) 151, 262
SfuI TTCGAA 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 1 cut(s) 323
SsiI CCGC 1 cut(s) 300
SspI AATATT 1 cut(s) 237
SstI GAGCTC 1 cut(s) 123
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 3 cut(s) 199, 246, 543
TaqI TCGA 2 cut(s) 222, 321
TasI AATT 1 cut(s) 323
TfiI GAWTC 2 cut(s) 8, 93
Tru1I TTAA 2 cut(s) 240, 246
Tru9I TTAA 2 cut(s) 240, 246
TspDTI ATGAA 2 cut(s) 457, 506
TspGWI ACGGA 1 cut(s) 113
XceI RCATGY 1 cut(s) 115
ZraI GACGTC 1 cut(s) 541
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.