Rh7DG488200

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016068
Physical Location & Seq
Reverse (-)
69299429 .. 69300834
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG488200.1

Sequence Viewer

Length: 570 bp
ATGCTGGCAAAGAAAATTTGTGATGCTGATCGTGTTGGTCAGAGAGCATGGAAGCTGCTGCGTATGGCATTTATATGGGCAAGAAAGGGCGGCGTCTTCAAACACCGCCTCATGATGGAACTGAGGGTCGTCCCCAAGTTCCTTAAGAATCACCTTGGCACAAATGCATCAACAAATTCAAGACCACAAATCCATTACTTCGAACGCGAGTTCTCCTTCGACAAGACCCCCCTTTTCAATCTCAAAATGCACCGTCCACCCTCCATGCGCTTCAACATTCCTTGCCTTAACCCCCCACTAGTACTGCACGACGATGACGACCATCTCTTTCATTCTGATCATTATGATGAAGGAAGGAAGAGCTTCCTTACAGATTCTGATCATGCTGATGATCTTGATCGTGATGATGATGGTGATGATCTTGACCAGGGGACAACATTATCAGAAGACTATGGTACAGCTGCTTATTCATGTGCTAATTATAATGAGGACGAATCAGTTGACAGAAAGGCAGATGAGTTCATCGCCAAATTCTATCGGCAAATGAAGCTGCAAAGACAAATTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

189

Amino Acids

22.15

Weight (kDa)

6.12

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 164 - 189 6.6e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 90, 106
AcsI RAATTY 4 cut(s) 15, 175, 530, 561
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 303, 457
AfiI CCNNNNNNNGG 1 cut(s) 115
AflII CTTAAG 1 cut(s) 143
AgsI TTSAA 4 cut(s) 100, 180, 238, 274
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 4 cut(s) 55, 363, 461, 550
AluI AGCT 4 cut(s) 55, 363, 461, 550
AlwNI CAGNNNCTG 1 cut(s) 377
ApeKI GCWGC 4 cut(s) 55, 58, 461, 550
ApoI RAATTY 4 cut(s) 15, 175, 530, 561
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 143, 425
AsuII TTCGAA 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 88, 453
BbvI GCAGC 4 cut(s) 42, 45, 448, 537
BccI CCATC 3 cut(s) 109, 330, 404
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 2 cut(s) 337, 379
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 5 cut(s) 56, 59, 91, 462, 551
BlsI GCNGC 5 cut(s) 57, 60, 92, 463, 552
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 13, 176
BpiI GAAGAC 2 cut(s) 88, 453
Bpu14I TTCGAA 1 cut(s) 201
BsaBI GATNNNNATC 3 cut(s) 27, 378, 396
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 154, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse8I GATNNNNATC 3 cut(s) 27, 378, 396
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 154, 427
BseJI GATNNNNATC 3 cut(s) 27, 378, 396
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 42, 45, 448, 537
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 207
BslFI GGGAC 2 cut(s) 116, 445
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 2 cut(s) 116, 445
Bsp119I TTCGAA 1 cut(s) 201
Bsp143I GATC 6 cut(s) 28, 337, 379, 391, 397, 418
BspACI CCGC 2 cut(s) 90, 106
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 154, 427
BssMI GATC 6 cut(s) 28, 337, 379, 391, 397, 418
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 6 cut(s) 31, 340, 382, 394, 400, 421
BstMBI GATC 6 cut(s) 28, 337, 379, 391, 397, 418
BstMWI GCNNNNNNNGC 1 cut(s) 547
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 42, 45, 448, 537
BstV2I GAAGAC 2 cut(s) 88, 453
BtgZI GCGATG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 270
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 302, 456
CviAII CATG 5 cut(s) 48, 112, 265, 383, 471
CviJI RGCY 4 cut(s) 55, 363, 461, 550
CviKI_1 RGCY 4 cut(s) 55, 363, 461, 550
CviQI GTAC 2 cut(s) 302, 456
DdeI CTNAG 1 cut(s) 122
DpnI GATC 6 cut(s) 30, 339, 381, 393, 399, 420
DpnII GATC 6 cut(s) 28, 337, 379, 391, 397, 418
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 5 cut(s) 51, 115, 268, 386, 474
FaqI GGGAC 2 cut(s) 116, 445
FatI CATG 5 cut(s) 47, 111, 264, 382, 470
FbaI TGATCA 2 cut(s) 337, 379
Fnu4HI GCNGC 5 cut(s) 56, 59, 91, 462, 551
Fsp4HI GCNGC 5 cut(s) 56, 59, 91, 462, 551
FspBI CTAG 1 cut(s) 299
GlaI GCGC 1 cut(s) 269
GluI GCNGC 5 cut(s) 56, 59, 91, 462, 551
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 5 cut(s) 51, 115, 268, 386, 474
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 3 cut(s) 148, 374, 494
HphI GGTGA 2 cut(s) 143, 425
Hpy166II GTNNAC 2 cut(s) 257, 502
Hpy188I TCNGA 4 cut(s) 42, 337, 379, 445
Hpy188III TCNNGA 5 cut(s) 112, 180, 395, 401, 422
Hpy8I GTNNAC 2 cut(s) 257, 502
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 226, 344, 348
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 4 cut(s) 167, 250, 307, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 547
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 5 cut(s) 51, 115, 268, 386, 474
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 2 cut(s) 337, 379
Kzo9I GATC 6 cut(s) 28, 337, 379, 391, 397, 418
LguI GCTCTTC 1 cut(s) 353
LpnPI CCDG 2 cut(s) 413, 440
Lsp1109I GCAGC 4 cut(s) 42, 45, 448, 537
LweI GCATC 2 cut(s) 13, 176
MaeI CTAG 1 cut(s) 299
MalI GATC 6 cut(s) 30, 339, 381, 393, 399, 420
MboI GATC 6 cut(s) 28, 337, 379, 391, 397, 418
MboII GAAGA 3 cut(s) 88, 370, 458
MluCI AATT 5 cut(s) 15, 175, 478, 530, 561
MnlI CCTC 4 cut(s) 117, 119, 271, 481
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 2 cut(s) 144, 288
MslI CAYNNNNRTG 4 cut(s) 73, 312, 345, 387
MspA1I CMGCKG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 547
NdeII GATC 6 cut(s) 28, 337, 379, 391, 397, 418
NlaIII CATG 5 cut(s) 51, 115, 268, 386, 474
NsiI ATGCAT 1 cut(s) 169
NspV TTCGAA 1 cut(s) 201
PagI TCATGA 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 3 cut(s) 148, 374, 494
PkrI GCNGC 5 cut(s) 57, 60, 92, 463, 552
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 2 cut(s) 303, 457
RsaNI GTAC 2 cut(s) 302, 456
RseI CAYNNNNRTG 4 cut(s) 73, 312, 345, 387
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 144, 288
SatI GCNGC 5 cut(s) 56, 59, 91, 462, 551
Sau3AI GATC 6 cut(s) 28, 337, 379, 391, 397, 418
ScaI AGTACT 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 428
SetI ASST 5 cut(s) 57, 156, 365, 463, 552
SfaNI GCATC 2 cut(s) 13, 176
SfuI TTCGAA 1 cut(s) 201
SmiMI CAYNNNNRTG 4 cut(s) 73, 312, 345, 387
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 5 cut(s) 15, 175, 478, 530, 561
SsiI CCGC 2 cut(s) 90, 106
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 2 cut(s) 201, 219
TasI AATT 5 cut(s) 15, 175, 478, 530, 561
TatI WGTACW 1 cut(s) 301
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 3 cut(s) 148, 374, 494
Tru1I TTAA 2 cut(s) 144, 288
Tru9I TTAA 2 cut(s) 144, 288
TseI GCWGC 4 cut(s) 55, 58, 461, 550
TspDTI ATGAA 6 cut(s) 320, 363, 459, 511, 555, 560
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 4 cut(s) 15, 175, 530, 561
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.