RchiOBHm_Chr7g0241911

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016068
Physical Location & Seq
Reverse (-)
67888001 .. 67888993
993 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21680

Sequence Viewer

Length: 597 bp
ATGCTGGCAAAGAAAATTTGTGATGCTGATCGTGTTGGTCAGAGAGCATGGAAGCTGCTGCGTATGGCATTTATATGGGCAAGAAAGGGCGGCGTCTTCAAACACCGCCTCATGATGGAACTGAGGGTCGTCCCCAAGTTCCTTAAGAATCACCTTGGCACAAATGCATCAACAAAATCAAGACCACAAATCCATTACTTTGAACGCGAGTTCTCCTTCGACAAGACCCCCCTTTTCAATCTCAAAATGCACCGTCCACCCTCCATGCGCTTCAACATTCCTTGCCTTAACCCCCCACTAGTACTGCACGACGATGACGACCATCTCTCTCATTCTGATCATTATGATGAAGGAAGGAAGAGCATCCTTACAAATTCTGATCAAGATCGTGATGATGATGGTGATGATCTTGACCAGGGGATAACATCATCAGAAGACTATGGTACAGCTGCTTATTCATGTGCTAATTATTATGAGGACGAAGCAGTTGACAGAAAGGCAGATGAGTTCATCGCCAAATTCTATCGGCAAATGAAGCTGCAAAGACAAAGTTCATACACACGGTACAATGACATGTTAAATAGAGGCGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

198

Amino Acids

23.2

Weight (kDa)

7.75

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 160 - 195 4.6e-18 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 90, 106
AcsI RAATTY 3 cut(s) 15, 373, 518
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 303, 445, 566
AfiI CCNNNNNNNGG 1 cut(s) 115
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 4 cut(s) 100, 203, 238, 274
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 3 cut(s) 55, 449, 538
AluI AGCT 3 cut(s) 55, 449, 538
ApeKI GCWGC 4 cut(s) 55, 58, 449, 538
ApoI RAATTY 3 cut(s) 15, 373, 518
AspLEI GCGC 2 cut(s) 270, 590
AsuHPI GGTGA 2 cut(s) 143, 413
BbsI GAAGAC 2 cut(s) 88, 441
BbvI GCAGC 4 cut(s) 42, 45, 436, 525
BccI CCATC 3 cut(s) 109, 330, 392
BciT130I CCWGG 1 cut(s) 416
BclI TGATCA 2 cut(s) 337, 379
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 5 cut(s) 56, 59, 91, 450, 539
BlsI GCNGC 5 cut(s) 57, 60, 92, 451, 540
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 3 cut(s) 13, 176, 372
BpiI GAAGAC 2 cut(s) 88, 441
BsaBI GATNNNNATC 2 cut(s) 27, 384
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 154, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse8I GATNNNNATC 2 cut(s) 27, 384
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 2 cut(s) 154, 415
BseGI GGATG 1 cut(s) 363
BseJI GATNNNNATC 2 cut(s) 27, 384
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 4 cut(s) 42, 45, 436, 525
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 28, 337, 379, 385, 406
BspACI CCGC 2 cut(s) 90, 106
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 353
BspTI CTTAAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 154, 415
BssMI GATC 5 cut(s) 28, 337, 379, 385, 406
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 2 cut(s) 254, 564
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 270, 590
BstKTI GATC 5 cut(s) 31, 340, 382, 388, 409
BstMBI GATC 5 cut(s) 28, 337, 379, 385, 406
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 414
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 42, 45, 436, 525
BstV2I GAAGAC 2 cut(s) 88, 441
BtgZI GCGATG 1 cut(s) 496
BtsCI GGATG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 111
CfoI GCGC 2 cut(s) 270, 590
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 302, 444, 565
CviAII CATG 5 cut(s) 48, 112, 265, 459, 574
CviJI RGCY 3 cut(s) 55, 449, 538
CviKI_1 RGCY 3 cut(s) 55, 449, 538
CviQI GTAC 3 cut(s) 302, 444, 565
DdeI CTNAG 1 cut(s) 122
DpnI GATC 5 cut(s) 30, 339, 381, 387, 408
DpnII GATC 5 cut(s) 28, 337, 379, 385, 406
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 5 cut(s) 51, 115, 268, 462, 577
FaqI GGGAC 1 cut(s) 116
FatI CATG 5 cut(s) 47, 111, 264, 458, 573
FbaI TGATCA 2 cut(s) 337, 379
Fnu4HI GCNGC 5 cut(s) 56, 59, 91, 450, 539
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 56, 59, 91, 450, 539
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 269, 589
GluI GCNGC 5 cut(s) 56, 59, 91, 450, 539
HgaI GACGC 1 cut(s) 82
HhaI GCGC 2 cut(s) 270, 590
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 5 cut(s) 51, 115, 268, 462, 577
Hin6I GCGC 2 cut(s) 268, 588
HinP1I GCGC 2 cut(s) 268, 588
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 1 cut(s) 148
HphI GGTGA 2 cut(s) 143, 413
Hpy166II GTNNAC 2 cut(s) 257, 490
Hpy188I TCNGA 4 cut(s) 42, 337, 379, 433
Hpy188III TCNNGA 5 cut(s) 112, 180, 383, 389, 410
Hpy8I GTNNAC 2 cut(s) 257, 490
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 226, 344, 348
HpyCH4III ACNGT 2 cut(s) 254, 564
HpyCH4V TGCA 4 cut(s) 167, 250, 307, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 5 cut(s) 51, 115, 268, 462, 577
HspAI GCGC 2 cut(s) 268, 588
Ksp22I TGATCA 2 cut(s) 337, 379
Kzo9I GATC 5 cut(s) 28, 337, 379, 385, 406
LguI GCTCTTC 1 cut(s) 353
LpnPI CCDG 2 cut(s) 401, 428
Lsp1109I GCAGC 4 cut(s) 42, 45, 436, 525
LweI GCATC 3 cut(s) 13, 176, 372
MaeI CTAG 1 cut(s) 299
MalI GATC 5 cut(s) 30, 339, 381, 387, 408
MboI GATC 5 cut(s) 28, 337, 379, 385, 406
MboII GAAGA 3 cut(s) 88, 370, 446
MluCI AATT 4 cut(s) 15, 373, 466, 518
MnlI CCTC 5 cut(s) 117, 119, 271, 469, 578
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 3 cut(s) 144, 288, 578
MslI CAYNNNNRTG 3 cut(s) 73, 312, 345
MspA1I CMGCKG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 535
NdeII GATC 5 cut(s) 28, 337, 379, 385, 406
NlaIII CATG 5 cut(s) 51, 115, 268, 462, 577
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 577
PagI TCATGA 1 cut(s) 111
PciI ACATGT 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 5 cut(s) 57, 60, 92, 451, 540
PscI ACATGT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 303, 445, 566
RsaNI GTAC 3 cut(s) 302, 444, 565
RseI CAYNNNNRTG 3 cut(s) 73, 312, 345
SapI GCTCTTC 1 cut(s) 353
SaqAI TTAA 3 cut(s) 144, 288, 578
SatI GCNGC 5 cut(s) 56, 59, 91, 450, 539
Sau3AI GATC 5 cut(s) 28, 337, 379, 385, 406
ScaI AGTACT 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 416
SetI ASST 4 cut(s) 57, 156, 451, 540
SfaNI GCATC 3 cut(s) 13, 176, 372
SmiMI CAYNNNNRTG 3 cut(s) 73, 312, 345
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 4 cut(s) 15, 373, 466, 518
SsiI CCGC 2 cut(s) 90, 106
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 2 cut(s) 254, 564
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 15, 373, 466, 518
TatI WGTACW 1 cut(s) 301
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 144, 288, 578
Tru9I TTAA 3 cut(s) 144, 288, 578
TseI GCWGC 4 cut(s) 55, 58, 449, 538
TspDTI ATGAA 5 cut(s) 363, 447, 499, 543, 548
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 3 cut(s) 15, 373, 518
XceI RCATGY 1 cut(s) 577
XspI CTAG 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.