MD11G1317200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016068
Physical Location & Seq
Reverse (-)
42885784 .. 42886494
711 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1317200.v1.1.491

Sequence Viewer

Length: 711 bp
ATGAAGATGTCGAAGAAGAAATCATCAAATGGTAATGATGATGACGTCGGTCGACCAAGACCAACACATAGAGCGTGGAAGCTGCTGCGTCTGGCATTGCTTTGGGCAAGAAAGGGCGGTGTTTTCAGGCGACGCCTCATGATGAAACTGCGCATCGTCCCCCAGTTGCTCAAGAGTAGCTTCGCCCACTTGCTTATGCACATGCAGCAGCAGAAGCAGCATCAGTATTACTTCGAGCGGCAGCTGTCGTTCGACAAGACCCCAATTTTCCCCACCCTCAAAACCAAAACCAGCTGCTCCCGCTCCTCCTCCATGTGCTTCATCAACAACATCCCTTGCCTAAACGCACCATTAGTACTTGATTATTTTGATGATGATCAAGTCGACATGATCATCAATAACCACGGATATCAATCAAACGATTGCCGCTACTGCTACTATGACGATGATGATGAGGATGATGCTAGTACTGCAAGACAGAGCTTTCTTATCAAATGTGATGAGAAGGATGATGGCCGTGATATTATTCAGGATGATGAGGAAGAAAGGGTTACTCTTTCTCCTGCCACAGCTTATAAAAACAATATTTACGAGGAGTTAGAGGAATCGGTTGACATAAAGGCAGATGAGTTCATAGCTAAGTTCTACCAGCAAATGAAGCTCCAAAGACAGATTTCATACCGACACAACACTCAGAACCTCACATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

237

Amino Acids

27.88

Weight (kDa)

6.99

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 202 - 233 1.5e-13 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AatII GACGTC 1 cut(s) 48
Acc16I TGCGCA 1 cut(s) 152
AccBSI CCGCTC 2 cut(s) 238, 303
AccI GTMKAC 2 cut(s) 52, 384
AciI CCGC 4 cut(s) 117, 238, 301, 427
AcoI YGGCCR 1 cut(s) 514
AcyI GRCGYC 2 cut(s) 45, 133
AfaI GTAC 2 cut(s) 357, 469
AflIII ACRYGT 1 cut(s) 704
AluBI AGCT 8 cut(s) 82, 180, 244, 294, 483, 572, 638, 661
AluI AGCT 8 cut(s) 82, 180, 244, 294, 483, 572, 638, 661
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 7 cut(s) 82, 85, 205, 208, 217, 241, 294
AspLEI GCGC 1 cut(s) 153
BbvI GCAGC 7 cut(s) 69, 72, 217, 220, 229, 253, 281
BccI CCATC 1 cut(s) 506
BceAI ACGGC 1 cut(s) 501
BclI TGATCA 2 cut(s) 376, 390
BfaI CTAG 1 cut(s) 465
BisI GCNGC 9 cut(s) 83, 86, 206, 209, 218, 239, 242, 295, 427
BlsI GCNGC 9 cut(s) 84, 87, 207, 210, 219, 240, 243, 296, 428
BmcAI AGTACT 2 cut(s) 357, 469
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 3 cut(s) 162, 229, 451
BmuI ACTGGG 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 155
BsaBI GATNNNNATC 2 cut(s) 375, 412
BsaHI GRCGYC 2 cut(s) 45, 133
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 95
Bse8I GATNNNNATC 2 cut(s) 375, 412
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 4 cut(s) 330, 463, 514, 538
BseJI GATNNNNATC 2 cut(s) 375, 412
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 707
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 3 cut(s) 295, 298, 608
BseXI GCAGC 7 cut(s) 69, 72, 217, 220, 229, 253, 281
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 516
BsiEI CGRYCG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 516
Bsp143I GATC 2 cut(s) 376, 390
BspACI CCGC 4 cut(s) 117, 238, 301, 427
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 1 cut(s) 706
BspHI TCATGA 1 cut(s) 138
BsrBI CCGCTC 2 cut(s) 238, 303
BsrDI GCAATG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 2 cut(s) 376, 390
BssNI GRCGYC 2 cut(s) 45, 133
BstACI GRCGYC 2 cut(s) 45, 133
BstDEI CTNAG 2 cut(s) 639, 693
BstDSI CCRYGG 1 cut(s) 403
BstF5I GGATG 4 cut(s) 330, 463, 514, 538
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 379, 393
BstMBI GATC 2 cut(s) 376, 390
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 7 cut(s) 205, 214, 217, 300, 432, 470, 658
BstNSI RCATGY 2 cut(s) 205, 708
BstPAI GACNNNNGTC 1 cut(s) 48
BstV1I GCAGC 7 cut(s) 69, 72, 217, 220, 229, 253, 281
BsuRI GGCC 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 403
BtsCI GGATG 4 cut(s) 330, 463, 514, 538
CciI TCATGA 1 cut(s) 138
CfoI GCGC 1 cut(s) 153
CseI GACGC 2 cut(s) 77, 141
Csp6I GTAC 2 cut(s) 356, 468
CviAII CATG 5 cut(s) 139, 202, 313, 388, 705
CviJI RGCY 9 cut(s) 82, 180, 244, 294, 483, 516, 572, 638, 661
CviKI_1 RGCY 9 cut(s) 82, 180, 244, 294, 483, 516, 572, 638, 661
CviQI GTAC 2 cut(s) 356, 468
DdeI CTNAG 2 cut(s) 639, 693
DpnI GATC 2 cut(s) 378, 392
DpnII GATC 2 cut(s) 376, 390
EaeI YGGCCR 1 cut(s) 514
Eco32I GATATC 1 cut(s) 410
EcoRV GATATC 1 cut(s) 410
FaeI CATG 5 cut(s) 142, 205, 316, 391, 708
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 143
FatI CATG 5 cut(s) 138, 201, 312, 387, 704
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 2 cut(s) 376, 390
FblI GTMKAC 2 cut(s) 52, 384
Fnu4HI GCNGC 9 cut(s) 83, 86, 206, 209, 218, 239, 242, 295, 427
FokI GGATG 4 cut(s) 317, 470, 521, 545
Fsp4HI GCNGC 9 cut(s) 83, 86, 206, 209, 218, 239, 242, 295, 427
FspBI CTAG 1 cut(s) 465
FspI TGCGCA 1 cut(s) 152
GlaI GCGC 1 cut(s) 152
GluI GCNGC 9 cut(s) 83, 86, 206, 209, 218, 239, 242, 295, 427
HaeIII GGCC 1 cut(s) 516
HgaI GACGC 2 cut(s) 77, 141
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 2 cut(s) 45, 133
Hin1II CATG 5 cut(s) 142, 205, 316, 391, 708
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 3 cut(s) 53, 385, 613
HindII GTYRAC 3 cut(s) 53, 385, 613
HinfI GANTC 1 cut(s) 605
Hpy166II GTNNAC 3 cut(s) 53, 385, 613
Hpy188I TCNGA 1 cut(s) 696
Hpy188III TCNNGA 3 cut(s) 139, 172, 530
Hpy8I GTNNAC 3 cut(s) 53, 385, 613
Hpy99I CGWCG 2 cut(s) 50, 135
HpyAV CCTTC 1 cut(s) 499
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 199, 205, 473
HpyF10VI GCNNNNNNNGC 7 cut(s) 205, 214, 217, 300, 432, 470, 658
HpyF3I CTNAG 2 cut(s) 639, 693
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 2 cut(s) 45, 133
Hsp92II CATG 5 cut(s) 142, 205, 316, 391, 708
HspAI GCGC 1 cut(s) 151
Ksp22I TGATCA 2 cut(s) 376, 390
Kzo9I GATC 2 cut(s) 376, 390
LmnI GCTCC 3 cut(s) 302, 308, 666
LpnPI CCDG 7 cut(s) 77, 112, 176, 304, 515, 576, 662
Lsp1109I GCAGC 7 cut(s) 69, 72, 217, 220, 229, 253, 281
LweI GCATC 3 cut(s) 162, 229, 451
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 378, 392
MbiI CCGCTC 2 cut(s) 238, 303
MboI GATC 2 cut(s) 376, 390
MboII GAAGA 4 cut(s) 16, 25, 28, 554
MluCI AATT 1 cut(s) 264
MnlI CCTC 9 cut(s) 146, 287, 316, 319, 448, 532, 586, 595, 710
MseI TTAA 1 cut(s) 709
MspA1I CMGCKG 2 cut(s) 244, 294
MwoI GCNNNNNNNGC 7 cut(s) 205, 214, 217, 300, 432, 470, 658
NdeII GATC 2 cut(s) 376, 390
NlaIII CATG 5 cut(s) 142, 205, 316, 391, 708
NsbI TGCGCA 1 cut(s) 152
NspI RCATGY 2 cut(s) 205, 708
PagI TCATGA 1 cut(s) 138
PciI ACATGT 1 cut(s) 704
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 9 cut(s) 84, 87, 207, 210, 219, 240, 243, 296, 428
PscI ACATGT 1 cut(s) 704
PshAI GACNNNNGTC 1 cut(s) 48
PsiI TTATAA 1 cut(s) 576
PvuII CAGCTG 2 cut(s) 244, 294
RsaI GTAC 2 cut(s) 357, 469
RsaNI GTAC 2 cut(s) 356, 468
SalI GTCGAC 2 cut(s) 51, 383
SaqAI TTAA 1 cut(s) 709
SatI GCNGC 9 cut(s) 83, 86, 206, 209, 218, 239, 242, 295, 427
Sau3AI GATC 2 cut(s) 376, 390
ScaI AGTACT 2 cut(s) 357, 469
SfaNI GCATC 3 cut(s) 162, 229, 451
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 264
SsiI CCGC 4 cut(s) 117, 238, 301, 427
SspI AATATT 1 cut(s) 586
SspMI CTAG 1 cut(s) 465
TaiI ACGT 1 cut(s) 48
TaqI TCGA 5 cut(s) 11, 52, 234, 252, 384
TaqII GACCGA 1 cut(s) 38
TasI AATT 1 cut(s) 264
TatI WGTACW 2 cut(s) 355, 467
TauI GCSGC 2 cut(s) 241, 429
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 709
Tru9I TTAA 1 cut(s) 709
TseI GCWGC 7 cut(s) 82, 85, 205, 208, 217, 241, 294
TspDTI ATGAA 6 cut(s) 17, 158, 310, 622, 666, 671
TspGWI ACGGA 1 cut(s) 420
XceI RCATGY 2 cut(s) 205, 708
XmiI GTMKAC 2 cut(s) 52, 384
XspI CTAG 1 cut(s) 465
ZraI GACGTC 1 cut(s) 46
ZrmI AGTACT 2 cut(s) 357, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.