FvH4_5g39610

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016068
Physical Location & Seq
Reverse (-)
29203046 .. 29203660
615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39610.t1

Sequence Viewer

Length: 615 bp
ATGCTGGCCACGAAGAAGTGTGAGGCTGATCGTGTTGGTCAGAGAGCATGGAAGCTGCTGCGTATGGCATTGCTATGGGCGAGAAAGGGCGGCGTCTTCAAACAAAAGCGCCTCATGATGGAACTAAGGGTCGTCCCCAAGTTCCTTAAGAACCACCTTGGCACCAATGCTTCATCAACAAAGTCAAGACCACAAATCCATTACTTTGAGCGCGAGCTCTCCTTCGACAAGACCCCCCTTTTCAATCTCAAAATGCACCGTCCTCCATCCATGCGCTTCAACATTCCTTGCCTAAACCCCCCACTGGTACTACATGATGACGACGACCATCTCTTTCATTATGATCATTATGGTGATGAAGGAAGGAAGAGCTTCCTTACAAATACTGATAATGCGGATGATATTGATATCGATGATGATGGTGATGATCTTGACCTTGGAATAACATTGTCAGACGACAATGGTGCAGCTGCTTATTCATGTGCTAATTATGAGGACGAAGCAGTTGACAGAAAGGCTGATGAGTTCATCGCTAAATTCTATCAGCAAATGAAGCTGCAAAGACAAATTTCAAACTTACAGTACAATGACATGTTAAATAGAGGCACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

205

Amino Acids

23.66

Weight (kDa)

6.16

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 166 - 201 4.9e-17 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 90, 395
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 536, 567
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 309, 584
AfiI CCNNNNNNNGG 2 cut(s) 118, 304
AflII CTTAAG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 100, 244, 280, 573
AluBI AGCT 5 cut(s) 55, 217, 372, 470, 556
AluI AGCT 5 cut(s) 55, 217, 372, 470, 556
Alw21I GWGCWC 1 cut(s) 219
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 5 cut(s) 55, 58, 467, 470, 556
ApoI RAATTY 2 cut(s) 536, 567
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 3 cut(s) 111, 213, 276
AsuHPI GGTGA 2 cut(s) 365, 434
BalI TGGCCA 1 cut(s) 8
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 42, 45, 457, 479, 543
BccI CCATC 4 cut(s) 112, 274, 336, 413
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BclI TGATCA 1 cut(s) 343
BfaI CTAG 1 cut(s) 613
BfoI RGCGCY 1 cut(s) 112
BfrI CTTAAG 1 cut(s) 146
BisI GCNGC 6 cut(s) 56, 59, 91, 468, 471, 557
BlsI GCNGC 6 cut(s) 57, 60, 92, 469, 472, 558
BmiI GGNNCC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 157, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 304
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 157, 436
BseGI GGATG 2 cut(s) 266, 403
BseLI CCNNNNNNNGG 2 cut(s) 118, 304
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 5 cut(s) 42, 45, 457, 479, 543
BsgI GTGCAG 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 118, 304
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 28, 343, 427
BspACI CCGC 2 cut(s) 90, 395
BspANI GGCC 1 cut(s) 8
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 157, 436
BssMI GATC 3 cut(s) 28, 343, 427
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 157, 436
Bst4CI ACNGT 2 cut(s) 260, 582
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 6, 215
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 266, 403
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 3 cut(s) 111, 213, 276
BstKTI GATC 3 cut(s) 31, 346, 430
BstMBI GATC 3 cut(s) 28, 343, 427
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 595
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 5 cut(s) 42, 45, 457, 479, 543
BstV2I GAAGAC 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 266, 403
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 6, 215
CciI TCATGA 1 cut(s) 114
CfoI GCGC 3 cut(s) 111, 213, 276
ClaI ATCGAT 1 cut(s) 411
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 308, 583
CviAII CATG 6 cut(s) 48, 115, 271, 314, 480, 592
CviJI RGCY 8 cut(s) 8, 26, 55, 217, 372, 470, 518, 556
CviKI_1 RGCY 8 cut(s) 8, 26, 55, 217, 372, 470, 518, 556
CviQI GTAC 2 cut(s) 308, 583
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 30, 345, 429
DpnII GATC 3 cut(s) 28, 343, 427
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 157, 436
Eco24I GRGCYC 1 cut(s) 219
Eco32I GATATC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 157, 436
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 157, 436
FaeI CATG 6 cut(s) 51, 118, 274, 317, 483, 595
FaqI GGGAC 1 cut(s) 119
FatI CATG 6 cut(s) 47, 114, 270, 313, 479, 591
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 56, 59, 91, 468, 471, 557
FokI GGATG 2 cut(s) 253, 410
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 6 cut(s) 56, 59, 91, 468, 471, 557
FspBI CTAG 1 cut(s) 613
GlaI GCGC 3 cut(s) 110, 212, 275
GluI GCNGC 6 cut(s) 56, 59, 91, 468, 471, 557
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 111, 213, 276
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 51, 118, 274, 317, 483, 595
Hin6I GCGC 3 cut(s) 109, 211, 274
HinP1I GCGC 3 cut(s) 109, 211, 274
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HphI GGTGA 2 cut(s) 365, 434
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 2 cut(s) 42, 454
Hpy188III TCNNGA 3 cut(s) 115, 186, 431
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 232, 353, 357
HpyCH4III ACNGT 2 cut(s) 260, 582
HpyCH4V TGCA 3 cut(s) 256, 467, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 51, 118, 274, 317, 483, 595
HspAI GCGC 3 cut(s) 109, 211, 274
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 28, 343, 427
LguI GCTCTTC 1 cut(s) 362
LpnPI CCDG 1 cut(s) 290
Lsp1109I GCAGC 5 cut(s) 42, 45, 457, 479, 543
MaeI CTAG 1 cut(s) 613
MalI GATC 3 cut(s) 30, 345, 429
MboI GATC 3 cut(s) 28, 343, 427
MboII GAAGA 3 cut(s) 25, 88, 379
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 3 cut(s) 487, 536, 567
MluNI TGGCCA 1 cut(s) 8
MnlI CCTC 5 cut(s) 16, 122, 273, 487, 596
Mox20I TGGCCA 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 147, 596
MslI CAYNNNNRTG 2 cut(s) 73, 351
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 146
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 553
NdeII GATC 3 cut(s) 28, 343, 427
NlaIII CATG 6 cut(s) 51, 118, 274, 317, 483, 595
NlaIV GGNNCC 1 cut(s) 163
NspI RCATGY 1 cut(s) 595
PagI TCATGA 1 cut(s) 114
PciI ACATGT 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 362
PdmI GAANNNNTTC 1 cut(s) 371
PkrI GCNGC 6 cut(s) 57, 60, 92, 469, 472, 558
PscI ACATGT 1 cut(s) 591
Psp124BI GAGCTC 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 2 cut(s) 309, 584
RsaNI GTAC 2 cut(s) 308, 583
RseI CAYNNNNRTG 2 cut(s) 73, 351
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 147, 596
SatI GCNGC 6 cut(s) 56, 59, 91, 468, 471, 557
Sau3AI GATC 3 cut(s) 28, 343, 427
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 57, 159, 219, 374, 438, 472, 558
SmiMI CAYNNNNRTG 2 cut(s) 73, 351
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 3 cut(s) 487, 536, 567
SsiI CCGC 2 cut(s) 90, 395
SspMI CTAG 1 cut(s) 613
SstI GAGCTC 1 cut(s) 219
StyI CCWWGG 2 cut(s) 157, 436
TaaI ACNGT 2 cut(s) 260, 582
TaqI TCGA 2 cut(s) 225, 411
TasI AATT 3 cut(s) 487, 536, 567
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 147, 596
Tru9I TTAA 2 cut(s) 147, 596
TscAI CASTG 1 cut(s) 309
TseI GCWGC 5 cut(s) 55, 58, 467, 470, 556
TspDTI ATGAA 6 cut(s) 162, 326, 372, 468, 517, 566
TspRI CASTG 1 cut(s) 309
Vha464I CTTAAG 1 cut(s) 146
XapI RAATTY 2 cut(s) 536, 567
XceI RCATGY 1 cut(s) 595
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.