Rw7G042510

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016068
Physical Location & Seq
Reverse (-)
66126984 .. 66127591
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G042510.1

Sequence Viewer

Length: 561 bp
ATGCTGGCAAAGAAAATTTGTGATGCTGATCGTGTTGGTCAGAGAGCATGGAAGCTACTGCGTATGGCATTTATATGGGCAAGAAAGGGCGGCGTCTTCAAACACCGCCTCATGATGGAACTGAGGGTCGTCCCCAAGTTCCTTAAGAATCACCTTGGCACAAATGCATCAACAAAGTCAAGACCACAAATCCATTACTTTGAACGCGAGTTCTCTTTCGACAAGACCCCTCTTTTCAATCTCAAAATGCACCTACTGCACGACGATGACGACCTTCTCTTTCATTCTGTTCATTATGATGAAGGAAGGAAGAGCTTCATTACAGATTCTGATCATGCTGATGGTCGTGATCGTGATGATGATGGTGATGATCTTGACCAGGGGATAACATCATCAGAAGACTATGGTACAGCTGCTTATTCATGTGCTAATTATTATGAGGACGAAGCAGTTGACAGAAAGGCAGATGAGTTCATCGCTAAATTCTATCGGCAAATGAAGCTGCAAAGACAAATTTCATACACACGGTACAATGACATGTTAAATAGAGGCGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

186

Amino Acids

21.87

Weight (kDa)

6.71

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 148 - 183 2.4e-18 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 90, 106
AcsI RAATTY 3 cut(s) 15, 482, 513
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 409, 530
AfiI CCNNNNNNNGG 1 cut(s) 115
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 3 cut(s) 100, 203, 238
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 4 cut(s) 55, 315, 413, 502
AluI AGCT 4 cut(s) 55, 315, 413, 502
AlwNI CAGNNNCTG 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 413, 502
ApoI RAATTY 3 cut(s) 15, 482, 513
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 143, 377
BbsI GAAGAC 2 cut(s) 88, 405
BbvI GCAGC 2 cut(s) 400, 489
BccI CCATC 3 cut(s) 109, 335, 356
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 331
BfrI CTTAAG 1 cut(s) 143
BisI GCNGC 3 cut(s) 91, 414, 503
BlsI GCNGC 3 cut(s) 92, 415, 504
Bme1390I CCNGG 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 2 cut(s) 13, 176
BpiI GAAGAC 2 cut(s) 88, 405
BsaBI GATNNNNATC 2 cut(s) 27, 330
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 154, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse8I GATNNNNATC 2 cut(s) 27, 330
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 154, 379
BseJI GATNNNNATC 2 cut(s) 27, 330
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 400, 489
BsgI GTGCAG 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 28, 331, 349, 370
BspACI CCGC 2 cut(s) 90, 106
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 305
BspTI CTTAAG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 154, 379
BssMI GATC 4 cut(s) 28, 331, 349, 370
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 305
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 4 cut(s) 31, 334, 352, 373
BstMBI GATC 4 cut(s) 28, 331, 349, 370
BstMWI GCNNNNNNNGC 2 cut(s) 256, 499
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 378
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 400, 489
BstV2I GAAGAC 2 cut(s) 88, 405
BtgZI GCGATG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 554
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 408, 529
CviAII CATG 5 cut(s) 48, 112, 335, 423, 538
CviJI RGCY 4 cut(s) 55, 315, 413, 502
CviKI_1 RGCY 4 cut(s) 55, 315, 413, 502
CviQI GTAC 2 cut(s) 408, 529
DdeI CTNAG 1 cut(s) 122
DpnI GATC 4 cut(s) 30, 333, 351, 372
DpnII GATC 4 cut(s) 28, 331, 349, 370
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 5 cut(s) 51, 115, 338, 426, 541
FaqI GGGAC 1 cut(s) 116
FatI CATG 5 cut(s) 47, 111, 334, 422, 537
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 91, 414, 503
Fsp4HI GCNGC 3 cut(s) 91, 414, 503
GlaI GCGC 1 cut(s) 553
GluI GCNGC 3 cut(s) 91, 414, 503
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 5 cut(s) 51, 115, 338, 426, 541
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 2 cut(s) 148, 326
HphI GGTGA 2 cut(s) 143, 377
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 3 cut(s) 42, 331, 397
Hpy188III TCNNGA 5 cut(s) 112, 180, 347, 353, 374
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 284, 296, 300
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 167, 250, 259, 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 499
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 5 cut(s) 51, 115, 338, 426, 541
HspAI GCGC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 4 cut(s) 28, 331, 349, 370
LguI GCTCTTC 1 cut(s) 305
LpnPI CCDG 2 cut(s) 365, 392
Lsp1109I GCAGC 2 cut(s) 400, 489
LweI GCATC 2 cut(s) 13, 176
MalI GATC 4 cut(s) 30, 333, 351, 372
MboI GATC 4 cut(s) 28, 331, 349, 370
MboII GAAGA 3 cut(s) 88, 322, 410
MluCI AATT 4 cut(s) 15, 430, 482, 513
MnlI CCTC 5 cut(s) 117, 119, 240, 433, 542
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 2 cut(s) 144, 542
MslI CAYNNNNRTG 4 cut(s) 73, 264, 297, 339
MspA1I CMGCKG 1 cut(s) 413
MspCI CTTAAG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 256, 499
NdeII GATC 4 cut(s) 28, 331, 349, 370
NlaIII CATG 5 cut(s) 51, 115, 338, 426, 541
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 541
PagI TCATGA 1 cut(s) 111
PciI ACATGT 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 148, 326
PkrI GCNGC 3 cut(s) 92, 415, 504
PscI ACATGT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 2 cut(s) 409, 530
RsaNI GTAC 2 cut(s) 408, 529
RseI CAYNNNNRTG 4 cut(s) 73, 264, 297, 339
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 144, 542
SatI GCNGC 3 cut(s) 91, 414, 503
Sau3AI GATC 4 cut(s) 28, 331, 349, 370
ScrFI CCNGG 1 cut(s) 380
SetI ASST 7 cut(s) 57, 156, 255, 276, 317, 415, 504
SfaNI GCATC 2 cut(s) 13, 176
SmiMI CAYNNNNRTG 4 cut(s) 73, 264, 297, 339
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 4 cut(s) 15, 430, 482, 513
SsiI CCGC 2 cut(s) 90, 106
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 15, 430, 482, 513
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 148, 326
Tru1I TTAA 2 cut(s) 144, 542
Tru9I TTAA 2 cut(s) 144, 542
TseI GCWGC 2 cut(s) 413, 502
TspDTI ATGAA 8 cut(s) 272, 281, 307, 315, 411, 463, 507, 512
Vha464I CTTAAG 1 cut(s) 143
XapI RAATTY 3 cut(s) 15, 482, 513
XceI RCATGY 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.