pycom03g23590

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016068
Physical Location & Seq
Reverse (-)
23377433 .. 23378155
723 bp
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UTR
Exon/CDS
Intron
pycom03g23590.1

Sequence Viewer

Length: 723 bp
ATGACAATGATGAAGATGTCGAAGAAGAAATCATCAAATGGTAATGATGGTGATGTCGGTCGACCAAGACCAACACATAGAGCGTGGAAGCTGCTGCGTCTGGCATTGCTTTGGGCAAGAAAAGGCGGTGTTTTCAGGCGACGCCTCATGATGGAACTGCGCGTCGTCCCCAAGTTGCTCAAGAGTAGCCTCGCCCACATGCTTATGCAGCAGCAACAGCAGCAGCAGTATTACTTTGAGCGGCAGCTGTCGTTCGACAAGACCCCCATTTTCCCCACCCTCAAAACGAAATCCAGCTGCTCCCGCTCCTCCTCCATGCGCTTCATTAACATCCCTTGCTTAAACCCACCATCAGTACTTGATTATTTTGATGATGATCAAGTCGACATGATCATCAATAACCATGAAGATCAATCAGAGGATCGCCGCAACTGCTACTATGATGATGATGAGGATGATGATAGTACTGCAAGGCAGAGCTTTCTTATCAAATGCGATGAGGATGATGATGGCCGAGATATTATTCAGGATGATGAGGAAAAAAAGGTTCCTCTTTCTCCAGCATCAGCTTCCAATAATAATAATATGTACGAGGAGGAAGAGGAGGAGTTGGAGGAATCGGTTGATATAAAGGCAGATGAGTTCATAGCTAAGTTTTACCAGCAAATGAAGCTCCAAAGACAGATTTCATACCTACACTACACTCAGAACCTCACATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

241

Amino Acids

28.28

Weight (kDa)

5.17

Isoelectric Point (pI)

68.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 206 - 238 4.6e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 241, 306
AccI GTMKAC 2 cut(s) 61, 384
AccII CGCG 1 cut(s) 162
AciI CCGC 4 cut(s) 126, 241, 304, 427
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 142
AfaI GTAC 3 cut(s) 357, 466, 590
AfiI CCNNNNNNNGG 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 716
AluBI AGCT 7 cut(s) 91, 247, 297, 480, 569, 650, 673
AluI AGCT 7 cut(s) 91, 247, 297, 480, 569, 650, 673
AlwI GGATC 1 cut(s) 429
AoxI GGCC 1 cut(s) 511
ApeKI GCWGC 8 cut(s) 91, 94, 208, 211, 220, 223, 244, 297
AspLEI GCGC 2 cut(s) 162, 321
AsuHPI GGTGA 1 cut(s) 62
BbvI GCAGC 8 cut(s) 78, 81, 220, 223, 232, 235, 256, 284
BccI CCATC 4 cut(s) 41, 145, 358, 503
BclI TGATCA 2 cut(s) 376, 390
BmcAI AGTACT 2 cut(s) 357, 466
BmiI GGNNCC 1 cut(s) 549
BmsI GCATC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 375
BseGI GGATG 4 cut(s) 330, 460, 508, 535
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 719
BseRI GAGGAG 5 cut(s) 298, 301, 608, 617, 620
BseXI GCAGC 8 cut(s) 78, 81, 220, 223, 232, 235, 256, 284
Bsh1236I CGCG 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 513
Bsp143I GATC 4 cut(s) 376, 390, 409, 421
BspACI CCGC 4 cut(s) 126, 241, 304, 427
BspANI GGCC 1 cut(s) 513
BspCNI CTCAG 1 cut(s) 718
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 1 cut(s) 429
BsrBI CCGCTC 2 cut(s) 241, 306
BsrDI GCAATG 1 cut(s) 104
BssMI GATC 4 cut(s) 376, 390, 409, 421
BssNI GRCGYC 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 594
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 651, 705
BstF5I GGATG 4 cut(s) 330, 460, 508, 535
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 162, 321
BstKTI GATC 4 cut(s) 379, 393, 412, 424
BstMBI GATC 4 cut(s) 376, 390, 409, 421
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 6 cut(s) 208, 217, 220, 303, 432, 670
BstNSI RCATGY 2 cut(s) 202, 720
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 8 cut(s) 78, 81, 220, 223, 232, 235, 256, 284
BsuRI GGCC 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 4 cut(s) 330, 460, 508, 535
CciI TCATGA 1 cut(s) 147
CfoI GCGC 2 cut(s) 162, 321
CseI GACGC 3 cut(s) 86, 150, 151
Csp6I GTAC 3 cut(s) 356, 465, 589
CviAII CATG 6 cut(s) 148, 199, 316, 388, 404, 717
CviJI RGCY 9 cut(s) 91, 189, 247, 297, 480, 513, 569, 650, 673
CviKI_1 RGCY 9 cut(s) 91, 189, 247, 297, 480, 513, 569, 650, 673
CviQI GTAC 3 cut(s) 356, 465, 589
DdeI CTNAG 2 cut(s) 651, 705
DpnI GATC 4 cut(s) 378, 392, 411, 423
DpnII GATC 4 cut(s) 376, 390, 409, 421
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
FaeI CATG 6 cut(s) 151, 202, 319, 391, 407, 720
FaqI GGGAC 1 cut(s) 152
FatI CATG 6 cut(s) 147, 198, 315, 387, 403, 716
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 2 cut(s) 376, 390
FblI GTMKAC 2 cut(s) 61, 384
FokI GGATG 4 cut(s) 317, 467, 515, 542
GlaI GCGC 2 cut(s) 161, 320
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 1 cut(s) 513
HgaI GACGC 3 cut(s) 86, 150, 151
HhaI GCGC 2 cut(s) 162, 321
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 6 cut(s) 151, 202, 319, 391, 407, 720
Hin6I GCGC 2 cut(s) 160, 319
HinP1I GCGC 2 cut(s) 160, 319
HincII GTYRAC 2 cut(s) 62, 385
HindII GTYRAC 2 cut(s) 62, 385
HinfI GANTC 1 cut(s) 617
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 62, 385
Hpy188I TCNGA 2 cut(s) 418, 708
Hpy188III TCNNGA 3 cut(s) 148, 181, 527
Hpy8I GTNNAC 2 cut(s) 62, 385
Hpy99I CGWCG 2 cut(s) 144, 167
HpyCH4V TGCA 2 cut(s) 208, 470
HpyF10VI GCNNNNNNNGC 6 cut(s) 208, 217, 220, 303, 432, 670
HpyF3I CTNAG 2 cut(s) 651, 705
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 6 cut(s) 151, 202, 319, 391, 407, 720
HspAI GCGC 2 cut(s) 160, 319
Ksp22I TGATCA 2 cut(s) 376, 390
Kzo9I GATC 4 cut(s) 376, 390, 409, 421
LmnI GCTCC 3 cut(s) 305, 311, 678
LpnPI CCDG 6 cut(s) 86, 121, 307, 512, 573, 674
Lsp1109I GCAGC 8 cut(s) 78, 81, 220, 223, 232, 235, 256, 284
LweI GCATC 1 cut(s) 572
MalI GATC 4 cut(s) 378, 392, 411, 423
MbiI CCGCTC 2 cut(s) 241, 306
MboI GATC 4 cut(s) 376, 390, 409, 421
MboII GAAGA 5 cut(s) 25, 34, 37, 419, 611
MmeI TCCRAC 1 cut(s) 591
MseI TTAA 3 cut(s) 327, 341, 721
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 2 cut(s) 247, 297
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 6 cut(s) 208, 217, 220, 303, 432, 670
NdeII GATC 4 cut(s) 376, 390, 409, 421
NlaIII CATG 6 cut(s) 151, 202, 319, 391, 407, 720
NlaIV GGNNCC 1 cut(s) 549
NmeAIII GCCGAG 1 cut(s) 539
NspI RCATGY 2 cut(s) 202, 720
PagI TCATGA 1 cut(s) 147
PciI ACATGT 1 cut(s) 716
PfeI GAWTC 1 cut(s) 617
PscI ACATGT 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 549
PvuII CAGCTG 2 cut(s) 247, 297
RsaI GTAC 3 cut(s) 357, 466, 590
RsaNI GTAC 3 cut(s) 356, 465, 589
RseI CAYNNNNRTG 1 cut(s) 203
SalI GTCGAC 2 cut(s) 60, 383
SaqAI TTAA 3 cut(s) 327, 341, 721
Sau3AI GATC 4 cut(s) 376, 390, 409, 421
ScaI AGTACT 2 cut(s) 357, 466
SfaNI GCATC 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SsiI CCGC 4 cut(s) 126, 241, 304, 427
TaqI TCGA 4 cut(s) 20, 61, 255, 384
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 2 cut(s) 355, 464
TauI GCSGC 2 cut(s) 244, 429
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 3 cut(s) 327, 341, 721
Tru9I TTAA 3 cut(s) 327, 341, 721
TseI GCWGC 8 cut(s) 91, 94, 208, 211, 220, 223, 244, 297
TspDTI ATGAA 6 cut(s) 26, 313, 420, 634, 678, 683
XceI RCATGY 2 cut(s) 202, 720
XmiI GTMKAC 2 cut(s) 61, 384
ZrmI AGTACT 2 cut(s) 357, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.