MD03G1297400.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016068
Physical Location & Seq
Reverse (-)
37317175 .. 37318225
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1297400.v1.1.491

Sequence Viewer

Length: 714 bp
ATGAAGATGTCGAAGAAGAAATCATCAAATGGTAATGATGATGATATCGGTCGACCAAGACCAACACATAGAGCGTGGAAGCTGCTGCGTCTGGCATTGCTTTGGGCAAGAAAAGGCGATGTTTTCAGGCGACACCTCATGATGGAACTGCGCGTCGTCCCCAAGTTGCTCAAGAGTAGCCTCGCCCACATGCTTATGCAGCAGCAACAGCAGCAGCAGTATTACTTTGAGAGGCAGCTTTCGTTCGACAAGACCCCCATTTTCCCCACCCTCAAAACGAAAACCAGCTGCTCCCGCTCCTCCTCCATGCGCTTCATCAACATCCCTTGCTTAAACCCACCATTAGTACTTGATTATTTTGATGATGATCAAGTCGACATGATCATCAATAACCATGAAGATCAATCAGAGGATCGCCGCAACTGCTACTATGATGATGATGAGGATGATGATAGTACTGCAAGGCAGAGCGTTCTTATCAAATGCGATGAGGATGATGATGGCCGTGATATTATTCAGGATGATGAGGAAAAAAAGGTTTCTCTTTCTCCAGCATCAGCTTCTAATAATAATAATTTGTACGAGGAGGAAGAGGAGGAGTTGGAGGAATCGGTTGATATAAAGGCAGATGAGTTCATAGCTAAGTTTTACCAGCAAATGAAGCTCCAAAGACAGATTTCATACCTACACTACACTCAGAACCTCACATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

238

Amino Acids

27.99

Weight (kDa)

5.0

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 203 - 235 4.5e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02170 AT5G38700
fragaria_vesca FvH4_5g39610
malus_domestica MD03G1297400.v1.1 MD11G1317200.v1.1
prunus_persica Prupe.8G269600_v2.0.a1
pyrus_communis pycom03g23590 pycom11g27680
rosa_chinensis RchiOBHm_Chr7g0241911
rosa_laevigata RLG00000000530
rosa_multiflora Rmu_ssc0000315.1_g000001
rosa_roxburghii Rroxscaffold_3G00218490
rosa_rugosa Rorug07G0348600
rosa_samantha Rh7DG488200
rosa_wichuraiana Rw7G042510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 52, 375
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 295, 418
AclWI GGATC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 502
AfaI GTAC 3 cut(s) 348, 457, 581
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 707
AluBI AGCT 6 cut(s) 82, 238, 288, 560, 641, 664
AluI AGCT 6 cut(s) 82, 238, 288, 560, 641, 664
AlwI GGATC 1 cut(s) 420
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 8 cut(s) 82, 85, 199, 202, 211, 214, 235, 288
AspLEI GCGC 2 cut(s) 153, 312
BbvI GCAGC 8 cut(s) 69, 72, 211, 214, 223, 226, 247, 275
BccI CCATC 2 cut(s) 136, 494
BceAI ACGGC 1 cut(s) 489
BclI TGATCA 2 cut(s) 367, 381
BisI GCNGC 9 cut(s) 83, 86, 200, 203, 212, 215, 236, 289, 418
BlsI GCNGC 9 cut(s) 84, 87, 201, 204, 213, 216, 237, 290, 419
BmcAI AGTACT 2 cut(s) 348, 457
BmsI GCATC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 366
BseGI GGATG 4 cut(s) 321, 451, 499, 526
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 710
BseRI GAGGAG 5 cut(s) 289, 292, 599, 608, 611
BseXI GCAGC 8 cut(s) 69, 72, 211, 214, 223, 226, 247, 275
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 367, 381, 400, 412
BspACI CCGC 2 cut(s) 295, 418
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 1 cut(s) 709
BspFNI CGCG 1 cut(s) 153
BspHI TCATGA 1 cut(s) 138
BspPI GGATC 1 cut(s) 420
BsrBI CCGCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 95
BssMI GATC 4 cut(s) 367, 381, 400, 412
Bst6I CTCTTC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 642, 696
BstF5I GGATG 4 cut(s) 321, 451, 499, 526
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 2 cut(s) 153, 312
BstKTI GATC 4 cut(s) 370, 384, 403, 415
BstMBI GATC 4 cut(s) 367, 381, 400, 412
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 6 cut(s) 199, 208, 211, 294, 423, 661
BstNSI RCATGY 2 cut(s) 193, 711
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 8 cut(s) 69, 72, 211, 214, 223, 226, 247, 275
BsuRI GGCC 1 cut(s) 504
BtgZI GCGATG 2 cut(s) 132, 501
BtsCI GGATG 4 cut(s) 321, 451, 499, 526
CciI TCATGA 1 cut(s) 138
CfoI GCGC 2 cut(s) 153, 312
CseI GACGC 2 cut(s) 77, 142
Csp6I GTAC 3 cut(s) 347, 456, 580
CviAII CATG 6 cut(s) 139, 190, 307, 379, 395, 708
CviJI RGCY 8 cut(s) 82, 180, 238, 288, 504, 560, 641, 664
CviKI_1 RGCY 8 cut(s) 82, 180, 238, 288, 504, 560, 641, 664
CviQI GTAC 3 cut(s) 347, 456, 580
DdeI CTNAG 2 cut(s) 642, 696
DpnI GATC 4 cut(s) 369, 383, 402, 414
DpnII GATC 4 cut(s) 367, 381, 400, 412
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco32I GATATC 1 cut(s) 46
EcoRV GATATC 1 cut(s) 46
FaeI CATG 6 cut(s) 142, 193, 310, 382, 398, 711
FaqI GGGAC 1 cut(s) 143
FatI CATG 6 cut(s) 138, 189, 306, 378, 394, 707
FauI CCCGC 1 cut(s) 302
FbaI TGATCA 2 cut(s) 367, 381
FblI GTMKAC 2 cut(s) 52, 375
Fnu4HI GCNGC 9 cut(s) 83, 86, 200, 203, 212, 215, 236, 289, 418
FokI GGATG 4 cut(s) 308, 458, 506, 533
Fsp4HI GCNGC 9 cut(s) 83, 86, 200, 203, 212, 215, 236, 289, 418
GlaI GCGC 2 cut(s) 152, 311
GluI GCNGC 9 cut(s) 83, 86, 200, 203, 212, 215, 236, 289, 418
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 504
HgaI GACGC 2 cut(s) 77, 142
HhaI GCGC 2 cut(s) 153, 312
Hin1II CATG 6 cut(s) 142, 193, 310, 382, 398, 711
Hin6I GCGC 2 cut(s) 151, 310
HinP1I GCGC 2 cut(s) 151, 310
HincII GTYRAC 2 cut(s) 53, 376
HindII GTYRAC 2 cut(s) 53, 376
HinfI GANTC 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 53, 376
Hpy188I TCNGA 2 cut(s) 409, 699
Hpy188III TCNNGA 3 cut(s) 139, 172, 518
Hpy8I GTNNAC 2 cut(s) 53, 376
Hpy99I CGWCG 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 199, 461
HpyF10VI GCNNNNNNNGC 6 cut(s) 199, 208, 211, 294, 423, 661
HpyF3I CTNAG 2 cut(s) 642, 696
Hsp92II CATG 6 cut(s) 142, 193, 310, 382, 398, 711
HspAI GCGC 2 cut(s) 151, 310
Ksp22I TGATCA 2 cut(s) 367, 381
Kzo9I GATC 4 cut(s) 367, 381, 400, 412
LmnI GCTCC 3 cut(s) 296, 302, 669
LpnPI CCDG 6 cut(s) 77, 112, 298, 503, 564, 665
Lsp1109I GCAGC 8 cut(s) 69, 72, 211, 214, 223, 226, 247, 275
LweI GCATC 1 cut(s) 563
MalI GATC 4 cut(s) 369, 383, 402, 414
MbiI CCGCTC 1 cut(s) 297
MboI GATC 4 cut(s) 367, 381, 400, 412
MboII GAAGA 5 cut(s) 16, 25, 28, 410, 602
MluCI AATT 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 582
MseI TTAA 2 cut(s) 332, 712
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 288
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 199, 208, 211, 294, 423, 661
NdeII GATC 4 cut(s) 367, 381, 400, 412
NlaIII CATG 6 cut(s) 142, 193, 310, 382, 398, 711
NspI RCATGY 2 cut(s) 193, 711
PagI TCATGA 1 cut(s) 138
PciI ACATGT 1 cut(s) 707
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 9 cut(s) 84, 87, 201, 204, 213, 216, 237, 290, 419
PscI ACATGT 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 288
RsaI GTAC 3 cut(s) 348, 457, 581
RsaNI GTAC 3 cut(s) 347, 456, 580
RseI CAYNNNNRTG 1 cut(s) 194
SalI GTCGAC 2 cut(s) 51, 374
SaqAI TTAA 2 cut(s) 332, 712
SatI GCNGC 9 cut(s) 83, 86, 200, 203, 212, 215, 236, 289, 418
Sau3AI GATC 4 cut(s) 367, 381, 400, 412
ScaI AGTACT 2 cut(s) 348, 457
SfaNI GCATC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 574
SsiI CCGC 2 cut(s) 295, 418
TaqI TCGA 4 cut(s) 11, 52, 246, 375
TaqII GACCGA 1 cut(s) 38
TasI AATT 1 cut(s) 574
TatI WGTACW 2 cut(s) 346, 455
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 2 cut(s) 332, 712
Tru9I TTAA 2 cut(s) 332, 712
TseI GCWGC 8 cut(s) 82, 85, 199, 202, 211, 214, 235, 288
TspDTI ATGAA 6 cut(s) 17, 304, 411, 625, 669, 674
XceI RCATGY 2 cut(s) 193, 711
XmiI GTMKAC 2 cut(s) 52, 375
ZrmI AGTACT 2 cut(s) 348, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.