Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Reverse (-)

1149248 .. 1151355

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCCTCATCGCAATGATCGCCGATGAGGACACTGTTGTTGGATTTTTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACAAATTACCTCATCGTGGATTCAAAGACAACTGTGAGACAAATTGAGGATGCTTTCAAGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATGATTCAGTTCTCTCTCGTGTCAAGTACCTCTTTTCTGCAGAATCTGTGTCACAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

6.08

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	15 - 116	1e-27	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	13, 235, 286, 311
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	136, 250, 301
AgsI	TTSAA	2 cut(s)	144, 178
AluBI	AGCT	2 cut(s)	14, 261
AluI	AGCT	2 cut(s)	14, 261
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	4 cut(s)	13, 235, 286, 311
AlwNI	CAGNNNCTG	2 cut(s)	278, 371
ApoI	RAATTY	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	304
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	125
BccI	CCATC	2 cut(s)	79, 315
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 250, 301
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	175, 202, 307
BseLI	CCNNNNNNNGG	3 cut(s)	136, 250, 301
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	136, 250, 301
BsmAI	GTCTC	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	18, 51, 240, 291, 316
BspCNI	CTCAG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	4 cut(s)	13, 235, 286, 311
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	5 cut(s)	18, 51, 240, 291, 316
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	70, 154
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	175, 202, 307
BstKTI	GATC	5 cut(s)	21, 54, 243, 294, 319
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	5 cut(s)	18, 51, 240, 291, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 44, 53
BstSFI	CTRYAG	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	175, 202, 307
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	2 cut(s)	278, 371
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	6 cut(s)	5, 14, 89, 222, 261, 271
CviKI_1	RGCY	6 cut(s)	5, 14, 89, 222, 261, 271
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	5 cut(s)	20, 53, 242, 293, 318
DpnII	GATC	5 cut(s)	18, 51, 240, 291, 316
Eco130I	CCWWGG	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	329
FaiI	YATR	5 cut(s)	110, 228, 239, 315, 327
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	325
FokI	GGATG	3 cut(s)	182, 209, 294
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	111
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	140, 329, 368
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	2 cut(s)	70, 154
HpyCH4V	TGCA	2 cut(s)	281, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 44, 53
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	5 cut(s)	18, 51, 240, 291, 316
LpnPI	CCDG	6 cut(s)	36, 75, 257, 285, 291, 333
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	5 cut(s)	20, 53, 242, 293, 318
MboI	GATC	5 cut(s)	18, 51, 240, 291, 316
MboII	GAAGA	1 cut(s)	130
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	3 cut(s)	124, 162, 182
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	50, 55, 108, 140, 160, 365
MseI	TTAA	2 cut(s)	218, 385
MslI	CAYNNNNRTG	2 cut(s)	47, 312
MspI	CCGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	11, 44, 53
NdeII	GATC	5 cut(s)	18, 51, 240, 291, 316
NlaIII	CATG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	375
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	140, 329, 368
PspFI	CCCAGC	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	2 cut(s)	278, 371
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	47, 312
SaqAI	TTAA	2 cut(s)	218, 385
Sau3AI	GATC	5 cut(s)	18, 51, 240, 291, 316
Sau96I	GGNCC	1 cut(s)	304
SetI	ASST	4 cut(s)	16, 132, 263, 357
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	47, 312
Sse9I	AATT	3 cut(s)	124, 162, 182
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	70, 154
TasI	AATT	3 cut(s)	124, 162, 182
TfiI	GAWTC	3 cut(s)	140, 329, 368
Tru1I	TTAA	2 cut(s)	218, 385
Tru9I	TTAA	2 cut(s)	218, 385
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	375
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.