Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Reverse (-)

2313303 .. 2318464

Gene Structure 5162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTAGAAATTGTTGAAAGAATGGCCTATACACCACTCTTATCTGTCGGAGAGGGTGAAGGGGGTACAAAGACTGATGTTGTTGTCGTTCTTATCCACAGCAAATACTCATTCTTGGTCAGACTTGCAATGCTGACACCAACAGCTGCTCTTGTGGAAACAACAATGAAACAAATTGAGGATGCATTCAAAGAGTTTACCACAAAGGATGACATTGCAATTGTCTTAATCAGTCAATACGTGGCAAACATGATAAGGTTTCTAGTTGATAGCTACAACAAGCCAGTTCCAGCTATATTGGAAATCCCTTCCAAGGATCATCCGTACGACCCTGCGAGTGACTCAGTTCTTTCGCGAGTCAAGTACCTCTTCTCTGCCGAATCCGTGGCAGGAGACAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

5.13

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	52 - 120	2.7e-19	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	355
AclWI	GGATC	1 cut(s)	324
AfaI	GTAC	3 cut(s)	67, 326, 365
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	17, 190
AluBI	AGCT	3 cut(s)	146, 273, 293
AluI	AGCT	3 cut(s)	146, 273, 293
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	2 cut(s)	5, 263
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	312, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	135, 213
BseDI	CCNNGG	2 cut(s)	312, 384
BseGI	GGATG	3 cut(s)	187, 214, 319
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	2 cut(s)	135, 213
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	26
BsiWI	CGTACG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	316
Bsp68I	TCGCGA	1 cut(s)	355
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	135, 213
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	312, 384
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	3 cut(s)	187, 214, 319
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	187, 214, 319
BtuMI	TCGCGA	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	66, 325, 364
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	5 cut(s)	26, 146, 273, 283, 293
CviKI_1	RGCY	5 cut(s)	26, 146, 273, 283, 293
CviQI	GTAC	3 cut(s)	66, 325, 364
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	30, 251, 296
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	194, 221, 306
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	5, 263
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	3 cut(s)	341, 357, 380
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	50, 122
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	53, 318
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	128, 185, 218
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	5 cut(s)	297, 303, 345, 375, 382
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	5, 263
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	361
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	3 cut(s)	9, 174, 219
MlyI	GAGTC	2 cut(s)	335, 366
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	46, 172, 377
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	185
MvnI	CGCG	1 cut(s)	355
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	338
NruI	TCGCGA	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	380
Pfl23II	CGTACG	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	335, 365
PpsI	GAGTC	2 cut(s)	335, 365
Ppu21I	YACGTR	1 cut(s)	241
PspLI	CGTACG	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	146
RruI	TCGCGA	1 cut(s)	355
RsaI	GTAC	3 cut(s)	67, 326, 365
RsaNI	GTAC	3 cut(s)	66, 325, 364
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	335, 366
SetI	ASST	6 cut(s)	148, 243, 260, 275, 295, 369
SfaNI	GCATC	1 cut(s)	172
Sse9I	AATT	3 cut(s)	9, 174, 219
SspMI	CTAG	2 cut(s)	5, 263
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	243
TasI	AATT	3 cut(s)	9, 174, 219
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	2 cut(s)	312, 373
XspI	CTAG	2 cut(s)	5, 263
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.