Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Reverse (-)

2235373 .. 2237771

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTGGAAGAGTTGGTATCCCTAATAAGAGCTCGGCACTCATTGCCATGATCGCTGATGAGGACACTGTAACTGGATTTCTGCTGGCTGGAGTGGGCAATGTTGACTTGCGCAGAAAGACAAATTATCTTATAGTTGATTCAAAAACAACAATGAAACAAATTGAGGATGCATTCAAAGAGTTTACCACAAAGGATGACATTGCAATTGTCTTAATCAGTCAATACGTGGCAAACATGATAAGGTTTCTAGTTGATAGCTACAACAAGCCAGTTCCAGCTATATTAGAAATCCCTTCCAAGGATCATCCGTACGACCCTGCGAGTGACTCAGTTCTTTCGCGAGTCAAGTACCTCTTCTCTGCCGAATCCGTGGCAGGAGACAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

130

Amino Acids

14.34

Weight (kDa)

5.78

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	15 - 116	1.8e-29	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	113
AccII	CGCG	1 cut(s)	343
AclWI	GGATC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	314, 353
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	144, 178
AluBI	AGCT	3 cut(s)	33, 261, 281
AluI	AGCT	3 cut(s)	33, 261, 281
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	29
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	229
BsaJI	CCNNGG	2 cut(s)	300, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	79, 272
Bse3DI	GCAATG	3 cut(s)	42, 106, 201
BseDI	CCNNGG	2 cut(s)	300, 372
BseGI	GGATG	3 cut(s)	175, 202, 307
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	3 cut(s)	42, 106, 201
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	79, 272
Bsh1236I	CGCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	35
BsiWI	CGTACG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	375
BsmI	GAATGC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	51, 304
Bsp68I	TCGCGA	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	343
BspPI	GGATC	1 cut(s)	312
BsrDI	GCAATG	3 cut(s)	42, 106, 201
BsrI	ACTGG	2 cut(s)	79, 272
BssECI	CCNNGG	2 cut(s)	300, 372
BssMI	GATC	2 cut(s)	51, 304
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	4, 362
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	175, 202, 307
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	54, 307
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	51, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstUI	CGCG	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	175, 202, 307
BtsIMutI	CAGTG	1 cut(s)	66
BtuMI	TCGCGA	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	313, 352
CviAII	CATG	2 cut(s)	49, 238
CviJI	RGCY	6 cut(s)	5, 33, 89, 261, 271, 281
CviKI_1	RGCY	6 cut(s)	5, 33, 89, 261, 271, 281
CviQI	GTAC	2 cut(s)	313, 352
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	2 cut(s)	53, 306
DpnII	GATC	2 cut(s)	51, 304
Eam1104I	CTCTTC	2 cut(s)	4, 362
EarI	CTCTTC	2 cut(s)	4, 362
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	52, 241
FaiI	YATR	4 cut(s)	50, 134, 239, 284
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	2 cut(s)	48, 237
FokI	GGATG	3 cut(s)	182, 209, 294
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	251
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	52, 241
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	4 cut(s)	140, 329, 345, 368
Hpy166II	GTNNAC	2 cut(s)	106, 186
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	2 cut(s)	106, 186
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	173, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	52, 241
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	51, 304
LpnPI	CCDG	8 cut(s)	60, 71, 75, 285, 291, 333, 363, 370
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	70, 326
MalI	GATC	2 cut(s)	53, 306
MboI	GATC	2 cut(s)	51, 304
MboII	GAAGA	2 cut(s)	21, 349
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	124, 162, 207
MlyI	GAGTC	2 cut(s)	323, 354
MnlI	CCTC	3 cut(s)	55, 160, 365
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	173
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NdeII	GATC	2 cut(s)	51, 304
NlaIII	CATG	2 cut(s)	52, 241
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	326
NruI	TCGCGA	1 cut(s)	343
NsbI	TGCGCA	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	175
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	140, 368
Pfl23II	CGTACG	1 cut(s)	312
PleI	GAGTC	2 cut(s)	323, 353
PpsI	GAGTC	2 cut(s)	323, 353
Ppu21I	YACGTR	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	35
PspLI	CGTACG	1 cut(s)	312
RruI	TCGCGA	1 cut(s)	343
RsaI	GTAC	2 cut(s)	314, 353
RsaNI	GTAC	2 cut(s)	313, 352
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	51, 304
SchI	GAGTC	2 cut(s)	323, 354
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	6 cut(s)	35, 231, 248, 263, 283, 357
SfaNI	GCATC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	124, 162, 207
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	231
TasI	AATT	3 cut(s)	124, 162, 207
TfiI	GAWTC	2 cut(s)	140, 368
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	2 cut(s)	300, 361
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.