Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000028.1

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Forward (+)

20526 .. 23354

Gene Structure 2829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000028.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgctcgaactgcgctatgtgcagaagccagaaggccaggagttcctatctgtaatactgaagcagagtttctcttatcaattccaagttactatcaaacttataatggctggaagagttggtatccctaataagagctcggcactcattgccatgatcgctgatgaggacactgtcactggatttctgctggctggagtgggcaatgttgacttgcgcagaaagacaaattatcttatagttgattcaaaaacaacaatgaaacaaattgaggatgcattcaaagagtttaccacaaaggatgatattgcaattgtcttaatcagtcaatacgtggcaaacatgataaggtttctagttgatagctacaacaagccagttccagctatattggaaatcccttccaaggatcatccgtacgaccctgcgagtgactcagttctttcgcgagtcaagtacctcttctctgccgaatccgtggcaggagacaggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

6.59

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
Acc16I	TGCGCA	1 cut(s)	218
AccII	CGCG	1 cut(s)	448
AclWI	GGATC	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	2 cut(s)	419, 458
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	249, 283
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	138, 366, 386
AluI	AGCT	3 cut(s)	138, 366, 386
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	15, 219
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	38
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	405, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	184, 377
Bse3DI	GCAATG	2 cut(s)	147, 211
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	405, 477
BseGI	GGATG	3 cut(s)	280, 307, 412
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	2 cut(s)	147, 211
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	184, 377
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	140
BsiWI	CGTACG	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	156, 409
Bsp68I	TCGCGA	1 cut(s)	448
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	147, 211
BsrI	ACTGG	2 cut(s)	184, 377
BssECI	CCNNGG	2 cut(s)	405, 477
BssMI	GATC	2 cut(s)	156, 409
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	109, 467
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	280, 307, 412
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	2 cut(s)	15, 219
BstKTI	GATC	2 cut(s)	159, 412
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	2 cut(s)	156, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 149, 158
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	280, 307, 412
BtsIMutI	CAGTG	2 cut(s)	171, 177
BtuMI	TCGCGA	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	2 cut(s)	15, 219
Csp6I	GTAC	2 cut(s)	418, 457
CviAII	CATG	2 cut(s)	154, 343
CviJI	RGCY	8 cut(s)	28, 36, 110, 138, 194, 366, 376, 386
CviKI_1	RGCY	8 cut(s)	28, 36, 110, 138, 194, 366, 376, 386
CviQI	GTAC	2 cut(s)	418, 457
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	2 cut(s)	158, 411
DpnII	GATC	2 cut(s)	156, 409
Eam1104I	CTCTTC	2 cut(s)	109, 467
EarI	CTCTTC	2 cut(s)	109, 467
Ecl136II	GAGCTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	157, 346
FaiI	YATR	6 cut(s)	18, 104, 155, 239, 344, 389
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	2 cut(s)	153, 342
FokI	GGATG	3 cut(s)	287, 314, 399
FriOI	GRGCYC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	356
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	2 cut(s)	14, 218
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	15, 219
Hin1II	CATG	2 cut(s)	157, 346
Hin6I	GCGC	2 cut(s)	13, 217
HinP1I	GCGC	2 cut(s)	13, 217
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	245, 434, 450, 473
Hpy166II	GTNNAC	2 cut(s)	211, 291
Hpy188III	TCNNGA	1 cut(s)	447
Hpy8I	GTNNAC	2 cut(s)	211, 291
HpyAV	CCTTC	2 cut(s)	26, 411
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	22, 278, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 149, 158
HpyF3I	CTNAG	1 cut(s)	436
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	157, 346
HspAI	GCGC	2 cut(s)	13, 217
Kzo9I	GATC	2 cut(s)	156, 409
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	88, 175, 431
MalI	GATC	2 cut(s)	158, 411
MboI	GATC	2 cut(s)	156, 409
MboII	GAAGA	2 cut(s)	126, 454
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	4 cut(s)	80, 229, 267, 312
MlyI	GAGTC	2 cut(s)	428, 459
MnlI	CCTC	3 cut(s)	160, 265, 470
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 149, 158
NdeII	GATC	2 cut(s)	156, 409
NlaIII	CATG	2 cut(s)	157, 346
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	175, 431
NruI	TCGCGA	1 cut(s)	448
NsbI	TGCGCA	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	280
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	245, 473
Pfl23II	CGTACG	1 cut(s)	417
PflFI	GACNNNGTC	1 cut(s)	173
PleI	GAGTC	2 cut(s)	428, 458
PpsI	GAGTC	2 cut(s)	428, 458
Ppu21I	YACGTR	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspLI	CGTACG	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	448
RsaI	GTAC	2 cut(s)	419, 458
RsaNI	GTAC	2 cut(s)	418, 457
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	156, 409
SchI	GAGTC	2 cut(s)	428, 459
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	140, 336, 353, 368, 388, 462
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	80, 229, 267, 312
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	80, 229, 267, 312
TfiI	GAWTC	2 cut(s)	245, 473
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	2 cut(s)	178, 184
TseFI	GTSAC	2 cut(s)	175, 431
Tsp45I	GTSAC	2 cut(s)	175, 431
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	405, 466
TspRI	CASTG	2 cut(s)	178, 184
Tth111I	GACNNNGTC	1 cut(s)	173
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.