Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Forward (+)

21410503 .. 21411511

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATTGCTGATGAGGACACTGTAACTGGATTTTTGCTGGCTGGAGTGGGCAACGTTGACTTGCGAAGAAAGACGAATTATCTCATTGTTGATTCAAAAACAACGGTGAAACAAATTGAAGATGCATTCAAAGAGTTTACGACAAAGGATGACATTGCAATTGTCTTGATCAGCCAATATGTTGCAAACATGATAAGGTTTCTAGTCGATAGCTACAATAAGCCGGTTCCGGCTATTTTGGAAATCCCTTCCAAGGATCATCCTTATGACCCTGCACACGACTCGGTTCTTTCACGAGTGAAGTACCTCTTCAACACCGAATCTGTGGCATCAGGAAGGCGATCGATCATCAAGTTTTTCGATATGTTTTACCCGAGAGGTTGCGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

6.72

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	2 - 100	3.5e-28	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	384
AclI	AACGTT	1 cut(s)	54
AclWI	GGATC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	96, 119, 130, 313
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
AlwI	GGATC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	373
BauI	CACGAG	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	2 cut(s)	112, 338
BpmI	CTGGAG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	154, 259
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	224, 230
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	168, 256, 341, 345
BspACI	CCGC	1 cut(s)	384
BspDI	ATCGAT	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	168, 256, 341, 345
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	22, 106
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	154, 259
BstKTI	GATC	4 cut(s)	171, 259, 344, 348
BstMBI	GATC	4 cut(s)	168, 256, 341, 345
BstMCI	CGRYCG	1 cut(s)	344
Bsu15I	ATCGAT	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	154, 259
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	41, 174, 213, 223, 233
CviKI_1	RGCY	5 cut(s)	41, 174, 213, 223, 233
CviQI	GTAC	1 cut(s)	304
DpnI	GATC	4 cut(s)	170, 258, 343, 347
DpnII	GATC	4 cut(s)	168, 256, 341, 345
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	180, 191, 267, 365
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	168
FokI	GGATG	2 cut(s)	161, 246
FspBI	CTAG	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	2 cut(s)	224, 230
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	92, 281, 320
HpaII	CCGG	2 cut(s)	224, 230
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	58, 138
Hpy188III	TCNNGA	3 cut(s)	166, 294, 333
Hpy8I	GTNNAC	2 cut(s)	58, 138
HpyAV	CCTTC	2 cut(s)	258, 330
HpyCH4III	ACNGT	2 cut(s)	22, 106
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	125, 158, 185, 275
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	168, 256, 341, 345
LpnPI	CCDG	7 cut(s)	12, 23, 27, 237, 243, 285, 318
LweI	GCATC	2 cut(s)	112, 338
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	170, 258, 343, 347
MboI	GATC	4 cut(s)	168, 256, 341, 345
MboII	GAAGA	3 cut(s)	78, 131, 301
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	3 cut(s)	76, 114, 159
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	7, 317, 371
Mph1103I	ATGCAT	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	224, 230
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	125
NdeII	GATC	4 cut(s)	168, 256, 341, 345
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	127
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	92, 320
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp1406I	AACGTT	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	228
PvuI	CGATCG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	264
Sau3AI	GATC	4 cut(s)	168, 256, 341, 345
SchI	GAGTC	1 cut(s)	275
SetI	ASST	5 cut(s)	57, 200, 215, 309, 382
SfaNI	GCATC	2 cut(s)	112, 338
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	76, 114, 159
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	22, 106
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	207, 344, 360
TasI	AATT	3 cut(s)	76, 114, 159
TfiI	GAWTC	2 cut(s)	92, 320
TscAI	CASTG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	25
XspI	CTAG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.