Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Reverse (-)

2313069 .. 2315659

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGTTTTATTGTTCTTGGTGTAGTTACTATCAAACTTATAATGGCTGGAAGAGTTGGTATCCCTAATAAGAGCTCGGCACTCATTGCCATGATCGCTGATGAGGACACTGTAACTGGATTTCTGCTGGCTGGAGTGGGCAATGTTGACTTGCGCAGAAAGACAAATTATCTTATAGTTGATTCAAAAACAACAATGAAACAAATTGAGGATGCATTCAAAGAGTTTACCACAAAGGATGACATTGCAATTGTCTTAATCAGTCAATACGTGGCAAACATGATAAGGTTTCTAGTTGATAGCTACAACAAGCCAGTTCCAGCTATATTGGAAATCCCTTCCAAGGATCATCCGTACGACCCTGCGAGTGACTCAGTTCTTTCGCGAGTCAAGTACCTCTTCTCTGCCGAATCCGTGGCAGGAGACAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

6.57

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	29 - 130	2.6e-29	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
Acc16I	TGCGCA	1 cut(s)	155
AccII	CGCG	1 cut(s)	385
AclWI	GGATC	1 cut(s)	354
AfaI	GTAC	2 cut(s)	356, 395
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	186, 220
AluBI	AGCT	3 cut(s)	75, 303, 323
AluI	AGCT	3 cut(s)	75, 303, 323
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	342, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	121, 314
Bse3DI	GCAATG	3 cut(s)	84, 148, 243
BseDI	CCNNGG	2 cut(s)	342, 414
BseGI	GGATG	3 cut(s)	217, 244, 349
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	3 cut(s)	84, 148, 243
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	121, 314
Bsh1236I	CGCG	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	77
BsiWI	CGTACG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	93, 346
Bsp68I	TCGCGA	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	354
BsrDI	GCAATG	3 cut(s)	84, 148, 243
BsrI	ACTGG	2 cut(s)	121, 314
BssECI	CCNNGG	2 cut(s)	342, 414
BssMI	GATC	2 cut(s)	93, 346
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	46, 404
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	217, 244, 349
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	96, 349
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	93, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 95
BstUI	CGCG	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	217, 244, 349
BtsIMutI	CAGTG	1 cut(s)	108
BtuMI	TCGCGA	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	355, 394
CviAII	CATG	2 cut(s)	91, 280
CviJI	RGCY	6 cut(s)	47, 75, 131, 303, 313, 323
CviKI_1	RGCY	6 cut(s)	47, 75, 131, 303, 313, 323
CviQI	GTAC	2 cut(s)	355, 394
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	2 cut(s)	95, 348
DpnII	GATC	2 cut(s)	93, 346
Eam1104I	CTCTTC	2 cut(s)	46, 404
EarI	CTCTTC	2 cut(s)	46, 404
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	94, 283
FaiI	YATR	5 cut(s)	41, 92, 176, 281, 326
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FatI	CATG	2 cut(s)	90, 279
FokI	GGATG	3 cut(s)	224, 251, 336
FriOI	GRGCYC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	293
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	94, 283
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	182, 371, 387, 410
Hpy166II	GTNNAC	2 cut(s)	148, 228
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	148, 228
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	215, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 95
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	94, 283
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	93, 346
LpnPI	CCDG	9 cut(s)	33, 102, 113, 117, 327, 333, 375, 405, 412
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	25, 112, 368
MalI	GATC	2 cut(s)	95, 348
MboI	GATC	2 cut(s)	93, 346
MboII	GAAGA	2 cut(s)	63, 391
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	3 cut(s)	166, 204, 249
MlyI	GAGTC	2 cut(s)	365, 396
MnlI	CCTC	3 cut(s)	97, 202, 407
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	215
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	86, 95
NdeII	GATC	2 cut(s)	93, 346
NlaIII	CATG	2 cut(s)	94, 283
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	368
NruI	TCGCGA	1 cut(s)	385
NsbI	TGCGCA	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	217
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	182, 410
Pfl23II	CGTACG	1 cut(s)	354
PleI	GAGTC	2 cut(s)	365, 395
PpsI	GAGTC	2 cut(s)	365, 395
Ppu21I	YACGTR	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	77
PspLI	CGTACG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	385
RsaI	GTAC	2 cut(s)	356, 395
RsaNI	GTAC	2 cut(s)	355, 394
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	93, 346
SchI	GAGTC	2 cut(s)	365, 396
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	6 cut(s)	77, 273, 290, 305, 325, 399
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	166, 204, 249
SspMI	CTAG	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	166, 204, 249
TfiI	GAWTC	2 cut(s)	182, 410
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	2 cut(s)	342, 403
TspRI	CASTG	1 cut(s)	115
XspI	CTAG	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.