Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Forward (+)

47624310 .. 47626648

Gene Structure 2339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAACAACAAAAAGAAGAAGATGTATAATAGTAGAGCTAGCATTGGTTCAGTTCTGTGCAGGGGTCAAGTCTTTATATGTAGTGTTTTGTTTGGGCCGAATTTTGTGCGGAGATCTGTAATACTGAAGCAGAGTTTCTCTTATCAAATCCAAGTTGTTACTATCGAACTTATAATGGCTGGAAGAGCTGGTATCCCTAATAAGAGCTCGGCACTCATTGCCATGATTGCTGATGAGGACACTGTAACTGGATTTCTGCTGGCTGGAGTGGGCAATGTTGACTTGCGCAGAAAGACAAATTATCTTATAGTTGATTCAAAAACAACAATGAAACAAATTGAGGATGCATTCAAAGAGTTTACCACAAAGGATGACATTGCAATTGTCTTAATCAGTCAATACGTGGCAAACATGATAAGGTTTCTAGTTGATAGCTACAACAAGCCAGTTCCAGCTATATTGGAAATCCCTTCCAAGGATCATCCGTACGACCCTGCGAGTGACTCAGTTCTTTCGCGAGTCAAGTACCTCTTCTCTGCCGAATCCGTGGCAGGAGACAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

189

Amino Acids

20.94

Weight (kDa)

9.44

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	73 - 174	5.6e-29	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
Acc16I	TGCGCA	1 cut(s)	287
AccII	CGCG	1 cut(s)	517
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	488, 527
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	2 cut(s)	318, 352
AluBI	AGCT	5 cut(s)	38, 188, 207, 435, 455
AluI	AGCT	5 cut(s)	38, 188, 207, 435, 455
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	95
AsuNHI	GCTAGC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	2 cut(s)	39, 425
BfuI	GTATCC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	334
BmtI	GCTAGC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	474, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	253, 446
Bse3DI	GCAATG	3 cut(s)	216, 280, 375
BseDI	CCNNGG	2 cut(s)	474, 546
BseGI	GGATG	3 cut(s)	349, 376, 481
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	3 cut(s)	216, 280, 375
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	253, 446
BsgI	GTGCAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	209
BsiWI	CGTACG	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	113, 478
Bsp68I	TCGCGA	1 cut(s)	517
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	178
BsrDI	GCAATG	3 cut(s)	216, 280, 375
BsrI	ACTGG	2 cut(s)	253, 446
BssECI	CCNNGG	2 cut(s)	474, 546
BssMI	GATC	2 cut(s)	113, 478
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	178, 536
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	40, 261
BstDEI	CTNAG	1 cut(s)	505
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	349, 376, 481
BstFNI	CGCG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	116, 481
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	113, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 218, 227
BstUI	CGCG	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	349, 376, 481
BtsIMutI	CAGTG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	40, 261
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	487, 526
CviAII	CATG	2 cut(s)	223, 412
CviJI	RGCY	9 cut(s)	38, 97, 179, 188, 207, 263, 435, 445, 455
CviKI_1	RGCY	9 cut(s)	38, 97, 179, 188, 207, 263, 435, 445, 455
CviQI	GTAC	2 cut(s)	487, 526
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	2 cut(s)	115, 480
DpnII	GATC	2 cut(s)	113, 478
Eam1104I	CTCTTC	2 cut(s)	178, 536
EarI	CTCTTC	2 cut(s)	178, 536
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	226, 415
FaiI	YATR	8 cut(s)	27, 77, 79, 173, 224, 308, 413, 458
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FatI	CATG	2 cut(s)	222, 411
FokI	GGATG	3 cut(s)	356, 383, 468
FriOI	GRGCYC	1 cut(s)	209
FspBI	CTAG	2 cut(s)	39, 425
FspI	TGCGCA	1 cut(s)	287
GlaI	GCGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	226, 415
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	4 cut(s)	314, 503, 519, 542
Hpy166II	GTNNAC	2 cut(s)	280, 360
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	2 cut(s)	280, 360
HpyAV	CCTTC	1 cut(s)	480
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	60, 347, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 218, 227
HpyF3I	CTNAG	1 cut(s)	505
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	226, 415
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	113, 478
LguI	GCTCTTC	1 cut(s)	178
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	39, 425
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	157, 244, 500
MalI	GATC	2 cut(s)	115, 480
MboI	GATC	2 cut(s)	113, 478
MboII	GAAGA	4 cut(s)	28, 31, 195, 523
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	4 cut(s)	100, 298, 336, 381
MlyI	GAGTC	2 cut(s)	497, 528
MnlI	CCTC	3 cut(s)	229, 334, 539
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	3 cut(s)	185, 218, 227
NdeII	GATC	2 cut(s)	113, 478
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	226, 415
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	500
NruI	TCGCGA	1 cut(s)	517
NsbI	TGCGCA	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	178
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	314, 542
Pfl23II	CGTACG	1 cut(s)	486
PleI	GAGTC	2 cut(s)	497, 527
PpsI	GAGTC	2 cut(s)	497, 527
Ppu21I	YACGTR	1 cut(s)	403
PsiI	TTATAA	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	209
PspLI	CGTACG	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	113
RruI	TCGCGA	1 cut(s)	517
RsaI	GTAC	2 cut(s)	488, 527
RsaNI	GTAC	2 cut(s)	487, 526
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	113, 478
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	2 cut(s)	497, 528
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	8 cut(s)	40, 190, 209, 405, 422, 437, 457, 531
SfaNI	GCATC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	100, 298, 336, 381
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	39, 425
SstI	GAGCTC	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	100, 298, 336, 381
TfiI	GAWTC	2 cut(s)	314, 542
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	17, 344
TspGWI	ACGGA	2 cut(s)	474, 535
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	100
XspI	CTAG	2 cut(s)	39, 425
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.