Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Forward (+)

74683523 .. 74685563

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0632000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTGCCACCACAACAAGAACAGTCCACCTCCGAATCTTCATCATCACGTGAAATTTCAAACCAGGTCGATTTCTATGATGAAGATGATCAAGGAGGAAGAAGAAGAAGAAGAAATCAAGCCGGTAAAGAAAGCTTCACTGAAACCGAAGCGATCAGCGGCGGCGGCGCGGAAATCGAGGAGCCGGAGAAGAAAACCGAAGTACTTGAGCCTCCGCTCGTCGCGGCTCTCCGCCCGAAACGACGTCGTCGCCGCCTCCTCCGCCGATACGGATTCCAAGATGACTGCTGCTACTACTACTACGGCGGTGACGCGCCTCGGCCACCAGCTCAATTTGTTTCCGTTGCATCCGGAGCTGAACGCGGCGGAGGCGGATCACCAGTCCGACGACAACGTGGCTCTGCTGTTCGAATCCGACGGCGGAGCCACTCTCCACGGGCTGCTCACCTCCGCCGACACCGCCACCACCACCACGACGTCGACAATGTCGTCCGATCACGACCAGACCGAGTCCAGTTACGGCTACCGCCGCGGAATGGAACGCGGCGACGATATCGTACGGTCGGCGATGAGGGGCAGCGGAGGAGATCGGAGCGTGGAGAAGTGGGTGTGTTACTCGGAGCTGGTCAAGGAGGAGGTTGAGTTAACGGCGACTACGACGAGCTCGGCGAGCACGTGTTGCAGTGTCGGCGATGATCGGAAAAGTCATCGGGATCAACGACTGGCGTTGAAGCTTGACTATGAGGAGGTGTTGAATGCTTGGTCCGATAAGGGCTCGCTGTACATTAAAACCGAAGACGGCGAGCCGCCGCCGCAAACGGTGCCGGACTTGCTTCAGGATCAGCTCTTTCACCACCTCCATGATTCCACTGCCAATATTGAGGATTTATGGAGGGTGCCCGAAGAGGGTGGGAGTGGGAGTGGTAGCGGTAGCTTGGAGAGGAAGATTCAAAGACAGGCGAGTTTATTGAGATACAAGCGGAAAAGGGAGAACAGGCTGTTTTCTAAGCGGATTCGGTATGAAGTTCGGAAGCTAAATGCCGAGAAACGACCCCGTATGAAGGGTCGGTTTGTGAAGAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

361

Amino Acids

40.55

Weight (kDa)

9.26

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	318 - 360	3.6e-17	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
AatII	GACGTC	2 cut(s)	246, 479
AccB1I	GGYRCC	2 cut(s)	820, 895
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	479
AccII	CGCG	6 cut(s)	169, 223, 313, 362, 531, 543
AccIII	TCCGGA	1 cut(s)	349
AclWI	GGATC	3 cut(s)	381, 720, 846
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	818
AcvI	CACGTG	2 cut(s)	49, 675
AcyI	GRCGYC	2 cut(s)	243, 476
AfaI	GTAC	3 cut(s)	203, 558, 782
AfiI	CCNNNNNNNGG	3 cut(s)	535, 905, 1060
AflIII	ACRYGT	1 cut(s)	674
AgsI	TTSAA	4 cut(s)	59, 730, 754, 950
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	9 cut(s)	134, 328, 355, 622, 663, 733, 844, 933, 1033
AluI	AGCT	9 cut(s)	134, 328, 355, 622, 663, 733, 844, 933, 1033
Alw21I	GWGCWC	2 cut(s)	665, 674
AlwI	GGATC	3 cut(s)	381, 720, 846
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	287, 439, 576
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	169, 315
AspS9I	GGNCC	1 cut(s)	762
AsuHPI	GGTGA	4 cut(s)	319, 368, 436, 842
AsuII	TTCGAA	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	900
BanI	GGYRCC	2 cut(s)	820, 895
BanII	GRGCYC	2 cut(s)	665, 776
BbrPI	CACGTG	2 cut(s)	49, 675
BbsI	GAAGAC	1 cut(s)	801
Bbv12I	GWGCWC	2 cut(s)	665, 674
BbvI	GCAGC	3 cut(s)	274, 426, 588
BceAI	ACGGC	5 cut(s)	318, 433, 535, 663, 814
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	87
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	762
BmgT120I	GGNCC	1 cut(s)	762
BmiI	GGNNCC	4 cut(s)	182, 424, 822, 897
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	801
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
Bpu14I	TTCGAA	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	226
BsaAI	YACGTR	2 cut(s)	49, 675
BsaHI	GRCGYC	2 cut(s)	243, 476
BsaJI	CCNNGG	3 cut(s)	316, 433, 529
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	626, 656, 904, 934
Bsc4I	CCNNNNNNNGG	3 cut(s)	535, 905, 1060
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	379, 513, 726
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	316, 433, 529
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	3 cut(s)	535, 905, 1060
BseNI	ACTGG	3 cut(s)	379, 513, 726
BseRI	GAGGAG	5 cut(s)	193, 247, 597, 647, 758
BseSI	GKGCMC	1 cut(s)	900
BseXI	GCAGC	3 cut(s)	274, 426, 588
Bsh1236I	CGCG	6 cut(s)	169, 223, 313, 362, 531, 543
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	321
BshNI	GGYRCC	2 cut(s)	820, 895
BsiEI	CGRYCG	1 cut(s)	563
BsiHKAI	GWGCWC	2 cut(s)	665, 674
BsiSI	CCGG	4 cut(s)	122, 184, 350, 824
BsiWI	CGTACG	1 cut(s)	556
BslI	CCNNNNNNNGG	3 cut(s)	535, 905, 1060
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	408
Bsp1286I	GDGCHC	4 cut(s)	665, 674, 776, 900
Bsp13I	TCCGGA	1 cut(s)	349
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
BspANI	GGCC	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	6 cut(s)	169, 223, 313, 362, 531, 543
BspLI	GGNNCC	4 cut(s)	182, 424, 822, 897
BspPI	GGATC	3 cut(s)	381, 720, 846
BspT104I	TTCGAA	1 cut(s)	408
BspT107I	GGYRCC	2 cut(s)	820, 895
BsrBI	CCGCTC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	3 cut(s)	379, 513, 726
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	316, 433, 529
BssMI	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
BssNI	GRCGYC	2 cut(s)	243, 476
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	23, 561, 820
Bst6I	CTCTTC	2 cut(s)	897, 1070
BstACI	GRCGYC	2 cut(s)	243, 476
BstAPI	GCANNNNNTGC	2 cut(s)	678, 820
BstAUI	TGTACA	1 cut(s)	780
BstBAI	YACGTR	2 cut(s)	49, 675
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	3 cut(s)	670, 776, 803
BstDEI	CTNAG	1 cut(s)	1005
BstDSI	CCRYGG	2 cut(s)	433, 529
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	6 cut(s)	169, 223, 313, 362, 531, 543
BstHHI	GCGC	2 cut(s)	169, 315
BstKTI	GATC	8 cut(s)	90, 155, 376, 496, 589, 697, 715, 841
BstMBI	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
BstMCI	CGRYCG	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	900
BstUI	CGCG	6 cut(s)	169, 223, 313, 362, 531, 543
BstV1I	GCAGC	3 cut(s)	274, 426, 588
BstV2I	GAAGAC	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	321
BtgI	CCRYGG	2 cut(s)	433, 529
BtgZI	GCGATG	2 cut(s)	581, 705
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	2 cut(s)	688, 867
BtsIMutI	CAGTG	3 cut(s)	137, 688, 867
Cac8I	GCNNGC	3 cut(s)	670, 776, 803
CfoI	GCGC	2 cut(s)	169, 315
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	762
Cfr42I	CCGCGG	1 cut(s)	532
CseI	GACGC	1 cut(s)	319
CsiI	ACCWGGT	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	202, 557, 781
CviAII	CATG	1 cut(s)	860
CviQI	GTAC	3 cut(s)	202, 557, 781
DdeI	CTNAG	1 cut(s)	1005
DpnI	GATC	8 cut(s)	89, 154, 375, 495, 588, 696, 714, 840
DpnII	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	897, 1070
EarI	CTCTTC	2 cut(s)	897, 1070
EciI	GGCGGA	6 cut(s)	220, 250, 380, 386, 435, 439
Ecl136II	GAGCTC	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	665, 776
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	762
Eco53kI	GAGCTC	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	818
Eco72I	CACGTG	2 cut(s)	49, 675
EcoICRI	GAGCTC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	553
EcoT38I	GRGCYC	2 cut(s)	665, 776
FaeI	CATG	1 cut(s)	863
FaiI	YATR	6 cut(s)	77, 741, 861, 889, 1020, 1058
FatI	CATG	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	479
FokI	GGATG	1 cut(s)	333
FriOI	GRGCYC	2 cut(s)	665, 776
GlaI	GCGC	2 cut(s)	168, 314
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	4 cut(s)	122, 184, 350, 824
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	169, 315
Hin1I	GRCGYC	2 cut(s)	243, 476
Hin1II	CATG	1 cut(s)	863
Hin6I	GCGC	2 cut(s)	167, 313
HinP1I	GCGC	2 cut(s)	167, 313
HincII	GTYRAC	2 cut(s)	480, 645
HindII	GTYRAC	2 cut(s)	480, 645
HindIII	AAGCTT	2 cut(s)	132, 731
HinfI	GANTC	7 cut(s)	34, 272, 410, 509, 863, 946, 1012
HpaI	GTTAAC	1 cut(s)	645
HpaII	CCGG	4 cut(s)	122, 184, 350, 824
HphI	GGTGA	4 cut(s)	319, 368, 436, 842
Hpy166II	GTNNAC	3 cut(s)	26, 480, 645
Hpy188I	TCNGA	9 cut(s)	33, 385, 415, 493, 591, 619, 699, 766, 1029
Hpy188III	TCNNGA	4 cut(s)	350, 497, 710, 836
Hpy8I	GTNNAC	3 cut(s)	26, 480, 645
HpyAV	CCTTC	1 cut(s)	1054
HpyCH4III	ACNGT	3 cut(s)	23, 561, 820
HpyCH4IV	ACGT	5 cut(s)	48, 243, 393, 476, 674
HpyCH4V	TGCA	2 cut(s)	346, 681
HpyF3I	CTNAG	1 cut(s)	1005
HpySE526I	ACGT	5 cut(s)	48, 243, 393, 476, 674
Hsp92I	GRCGYC	2 cut(s)	243, 476
Hsp92II	CATG	1 cut(s)	863
HspAI	GCGC	2 cut(s)	167, 313
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	645
KspI	CCGCGG	1 cut(s)	532
Kzo9I	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
LmnI	GCTCC	5 cut(s)	180, 352, 422, 591, 619
Lsp1109I	GCAGC	3 cut(s)	274, 426, 588
LweI	GCATC	1 cut(s)	355
MabI	ACCWGGT	1 cut(s)	62
MaeII	ACGT	5 cut(s)	48, 243, 393, 476, 674
MaeIII	GTNAC	3 cut(s)	307, 515, 611
MalI	GATC	8 cut(s)	89, 154, 375, 495, 588, 696, 714, 840
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
MhlI	GDGCHC	4 cut(s)	665, 674, 776, 900
MluCI	AATT	2 cut(s)	53, 331
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	408, 438
MroI	TCCGGA	1 cut(s)	349
MseI	TTAA	2 cut(s)	644, 786
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	3 cut(s)	158, 531, 579
MspI	CCGG	4 cut(s)	122, 184, 350, 824
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	6 cut(s)	169, 223, 313, 362, 531, 543
NdeII	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
NlaIII	CATG	1 cut(s)	863
NlaIV	GGNNCC	4 cut(s)	182, 424, 822, 897
NmeAIII	GCCGAG	3 cut(s)	297, 644, 1066
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	6 cut(s)	485, 504, 653, 665, 671, 715
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	6 cut(s)	34, 272, 410, 863, 946, 1012
Pfl23II	CGTACG	1 cut(s)	556
PflFI	GACNNNGTC	3 cut(s)	245, 484, 508
PleI	GAGTC	1 cut(s)	517
PmaCI	CACGTG	2 cut(s)	49, 675
PmlI	CACGTG	2 cut(s)	49, 675
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	2 cut(s)	49, 675
Psp124BI	GAGCTC	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	62
PspCI	CACGTG	2 cut(s)	49, 675
PspGI	CCWGG	1 cut(s)	62
PspLI	CGTACG	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	182, 424, 822, 897
PspPI	GGNCC	1 cut(s)	762
PsyI	GACNNNGTC	3 cut(s)	245, 484, 508
RsaI	GTAC	3 cut(s)	203, 558, 782
RsaNI	GTAC	3 cut(s)	202, 557, 781
RseI	CAYNNNNRTG	1 cut(s)	858
SacI	GAGCTC	1 cut(s)	665
SacII	CCGCGG	1 cut(s)	532
SalI	GTCGAC	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	644, 786
Sau3AI	GATC	8 cut(s)	87, 152, 373, 493, 586, 694, 712, 838
Sau96I	GGNCC	1 cut(s)	762
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	4 cut(s)	665, 674, 776, 900
SexAI	ACCWGGT	1 cut(s)	62
SfaNI	GCATC	1 cut(s)	355
Sfr303I	CCGCGG	1 cut(s)	532
SfuI	TTCGAA	1 cut(s)	408
SgrBI	CCGCGG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	53, 331
SspI	AATATT	1 cut(s)	877
SstI	GAGCTC	1 cut(s)	665
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	3 cut(s)	23, 561, 820
TaiI	ACGT	5 cut(s)	51, 246, 396, 479, 677
TaqI	TCGA	4 cut(s)	68, 176, 408, 479
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	2 cut(s)	53, 331
TatI	WGTACW	2 cut(s)	201, 780
TfiI	GAWTC	6 cut(s)	34, 272, 410, 863, 946, 1012
Tru1I	TTAA	2 cut(s)	644, 786
Tru9I	TTAA	2 cut(s)	644, 786
TscAI	CASTG	3 cut(s)	144, 688, 874
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	287, 439, 576
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	29, 95, 1035, 1073
TspGWI	ACGGA	2 cut(s)	284, 330
TspRI	CASTG	3 cut(s)	144, 688, 874
Tth111I	GACNNNGTC	3 cut(s)	245, 484, 508
VpaK11BI	GGWCC	1 cut(s)	762
XapI	RAATTY	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	479
ZraI	GACGTC	2 cut(s)	244, 477
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.