Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012473

Physical Location & Seq

Genomic Coordinates Forward (+)

31298668 .. 31301740

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1241000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATTGCTGATGAGGACACTGTAACCGGATTTTTGCTAGCTGGAGTGGGTAACGTTGACTTGCGAAGAAAGACAAATTATCTTATTGTTGATTCAAAAACAACAGTGAAACAAATCGAAGATGCATTCAAAGAGTTTATGACAAGGGAGGACATTGCAATTGTCTTGATCAGCCAATATGTTGCAAACATGATAAGGTTTCTAGTAGATAGCTACAATAAGCCGGTTCCCGCTATTTTGGAAATCCCGTCCAAGGATCATCCCTATGACCCTGCACACGACTCAGTTCTTTCACGAGTGAAGTACCTCTTCAACACCGAATCTGTGGCATCAGGAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0008150 GO:0012505 GO:0015075 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022853 GO:0022857 GO:0031090 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098660 GO:0098805 GO:0099131

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_F

Protein Analysis

115

Amino Acids

12.89

Weight (kDa)

5.62

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_F	PF01990	2 - 100	7.9e-29	ATP synthase (F/14-kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02620
fragaria_vesca	FvH4_6g02960
malus_domestica	MD04G1224300.v1.1 MD12G1241000.v1.1
prunus_persica	Prupe.5G006500_v2.0.a1 Prupe.5G006500_v2.0.a1 Prupe.6G005500_v2.0.a1
pyrus_communis	pycom04g19760 pycom12g22070
rosa_chinensis	RchiOBHm_Chr3g0451151
rosa_laevigata	RLG00000025685
rosa_multiflora	Rmu_ssc0000028.1_g000004
rosa_roxburghii	Rroxscaffold_6G00428620
rosa_rugosa	Rorug02G0632000
rosa_samantha	Rh3AG034800 Rh3BG035200 Rh3CG033700 Rh3DG034800
rosa_wichuraiana	Rw3G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 340
AclI	AACGTT	1 cut(s)	54
AclWI	GGATC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	96, 130, 313
AluBI	AGCT	2 cut(s)	41, 213
AluI	AGCT	2 cut(s)	41, 213
AlwI	GGATC	1 cut(s)	264
AsuNHI	GCTAGC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	2 cut(s)	38, 203
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	2 cut(s)	112, 338
BmtI	GCTAGC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	27, 224
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	168, 256
BspACI	CCGC	2 cut(s)	231, 340
BspCNI	CTCAG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	168, 256
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	22, 106
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	171, 259
BstMBI	GATC	2 cut(s)	168, 256
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	18, 111
Cac8I	GCNNGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	4 cut(s)	41, 174, 213, 223
CviKI_1	RGCY	4 cut(s)	41, 174, 213, 223
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	2 cut(s)	170, 258
DpnII	GATC	2 cut(s)	168, 256
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	140, 180, 191, 267
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	168
FokI	GGATG	1 cut(s)	246
FspBI	CTAG	2 cut(s)	38, 203
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	2 cut(s)	27, 224
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	92, 281, 320
HpaII	CCGG	2 cut(s)	27, 224
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188III	TCNNGA	3 cut(s)	166, 294, 333
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	2 cut(s)	22, 106
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	125, 158, 185, 275
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 256
LpnPI	CCDG	5 cut(s)	27, 40, 237, 285, 318
LweI	GCATC	2 cut(s)	112, 338
MaeI	CTAG	2 cut(s)	38, 203
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	22, 50
MalI	GATC	2 cut(s)	170, 258
MboI	GATC	2 cut(s)	168, 256
MboII	GAAGA	3 cut(s)	78, 131, 301
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	2 cut(s)	76, 159
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	7, 142, 317
Mph1103I	ATGCAT	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	27, 224
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	168, 256
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	127
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	92, 320
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp1406I	AACGTT	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	228
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	168, 256
SchI	GAGTC	1 cut(s)	275
SetI	ASST	5 cut(s)	43, 57, 200, 215, 309
SfaNI	GCATC	2 cut(s)	112, 338
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	76, 159
SsiI	CCGC	2 cut(s)	231, 340
SspMI	CTAG	2 cut(s)	38, 203
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	22, 106
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	76, 159
TfiI	GAWTC	2 cut(s)	92, 320
TscAI	CASTG	2 cut(s)	25, 111
TspRI	CASTG	2 cut(s)	25, 111
XspI	CTAG	2 cut(s)	38, 203
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.