AT4G02735

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004316
Physical Location & Seq
Reverse (-)
1215092 .. 1217509
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02735.1

Sequence Viewer

Length: 1125 bp
ATGGATACTCCAAACCCTAAGCGACAGTGCTGTGATGCTTTCTCCTCGATCCAAAGACCTAATTCTGTTACTATAGCTCCAGATTTCAACCAGAATGACTTTGATTCGACTATCTCCTCTTTTCTTTTGTTGCCTGATTCGCCATATAATTCTATTGGTTGCTCTTTCGATAGAGTGCAAGGTCAAGTTCTCGACTCTGCTTCCAAAGCTTCCGGTGATGATTCCGTCAGGGATCGTCTCATCGATCGTACTGGCAAACTCGCATTTCTTCTTCTTGAATCCACCAAACGATTCTCTCGAATGCGCGCTACTCACTACAATTACAATTCTTGGTCCCTCCCTGATGAACTCACCATTAAGGTGTTTTCGGGGCTTGATACAAAGTCTCTGATGCAAGCTTCAGCATGTTGCACCATGTTCCGCAAATGTTCTATAGACCCTTTATGTTACTCTCACATTGACTTGAAAATGGGTGGCAAACGCATTTTTGATGAAATTGTGTGTAGTATGATTCACAAAGCTGGAACAGAACTCAGATCCCTTAAACTCGGTCGTGTTATATCTTCACGCAAAGGATCTTCGTTCACAAGCACTTGTCTTACCTCAGTAATTCGTAATCATGGTGGTCTCTTGAGAAGCCTACAACTTTACAATCGTATCGACAGGAACCAAGTCCTTATGCGCTTTGTTATCAGTGTATCTTCTTCAACCGTTGAGGCATTTGTTACCTCCTGCCCCAGCTTAACTACGCTAAAGCTCGTAGGTTTTGGACTAAAGGAAGAAACAGTCAGAAATCTTGCGGAGGGTTTTCCTAAGCTTACATACATGAATCTGACTAGAACGCCTGGAATTAGTGGTCGGTTTTTGAGGGATTTGAGAACTATCGGCAGAGACAGTCCAATCAAGACTCTAATATTGCGTGACTGTCATTGTCTAGATAGGAGAGAAATAGGGTATTTTTTGGATTCACTTCTCAATGGACACTTCAAATTCATTCGACATATTGACGTAACAAGTGAAGTTGCTGATGGGGGTAGGGAAATTATCATAGGAAAGTATATTATAACGAAGCTGAAAGAACAAAGATCAGATGTCACAATTGTAGCCAAATCTGTTTGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

374

Amino Acids

41.97

Weight (kDa)

9.27

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 111 - 155 1.9e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1064
AccII CGCG 1 cut(s) 306
AciI CCGC 2 cut(s) 421, 800
AclWI GGATC 4 cut(s) 43, 240, 531, 583
AcsI RAATTY 1 cut(s) 989
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 5 cut(s) 88, 278, 466, 708, 988
AjnI CCWGG 1 cut(s) 844
AluBI AGCT 8 cut(s) 77, 209, 398, 521, 741, 757, 817, 1072
AluI AGCT 8 cut(s) 77, 209, 398, 521, 741, 757, 817, 1072
Alw26I GTCTC 4 cut(s) 242, 390, 632, 885
AlwI GGATC 4 cut(s) 43, 240, 531, 583
ApoI RAATTY 1 cut(s) 989
AspLEI GCGC 3 cut(s) 306, 308, 684
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 227, 343
AvaII GGWCC 1 cut(s) 333
BaeI ACNNNNGTAYC 2 cut(s) 640, 673
BccI CCATC 1 cut(s) 1022
BciT130I CCWGG 1 cut(s) 846
BcoDI GTCTC 4 cut(s) 242, 390, 632, 885
BfaI CTAG 2 cut(s) 837, 935
BfmI CTRYAG 2 cut(s) 72, 432
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 335, 668
BmrFI CCNGG 1 cut(s) 846
BmsI GCATC 2 cut(s) 25, 381
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 2 cut(s) 18, 813
BpuEI CTTGAG 1 cut(s) 652
Bsa29I ATCGAT 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 632
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 846
BseCI ATCGAT 1 cut(s) 243
BseMII CTCAG 2 cut(s) 547, 618
BseNI ACTGG 1 cut(s) 256
BsePI GCGCGC 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 34, 106
BseYI CCCAGC 1 cut(s) 737
Bsh1236I CGCG 1 cut(s) 306
Bsh1285I CGRYCG 2 cut(s) 247, 553
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 2 cut(s) 247, 553
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 4 cut(s) 242, 390, 632, 885
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 632
Bsp143I GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
BspACI CCGC 2 cut(s) 421, 800
BspCNI CTCAG 2 cut(s) 546, 617
BspDI ATCGAT 1 cut(s) 243
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 335, 668
BspPI GGATC 4 cut(s) 43, 240, 531, 583
BspTNI GGTCTC 1 cut(s) 632
BsrI ACTGG 1 cut(s) 256
BssHII GCGCGC 1 cut(s) 304
BssMI GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 5 cut(s) 27, 712, 787, 896, 926
BstC8I GCNNGC 2 cut(s) 306, 396
BstDEI CTNAG 4 cut(s) 18, 533, 604, 813
BstFNI CGCG 1 cut(s) 306
BstHHI GCGC 3 cut(s) 306, 308, 684
BstKTI GATC 6 cut(s) 51, 235, 247, 539, 578, 1088
BstMAI GTCTC 4 cut(s) 242, 390, 632, 885
BstMBI GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
BstMCI CGRYCG 2 cut(s) 247, 553
BstMWI GCNNNNNNNGC 2 cut(s) 139, 206
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 2 cut(s) 72, 432
BstUI CGCG 1 cut(s) 306
BstX2I RGATCY 2 cut(s) 536, 575
BstYI RGATCY 2 cut(s) 536, 575
Bsu15I ATCGAT 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 32, 700
Cac8I GCNNGC 2 cut(s) 306, 396
CfoI GCGC 3 cut(s) 306, 308, 684
Cfr13I GGNCC 1 cut(s) 333
ClaI ATCGAT 1 cut(s) 243
Csp6I GTAC 1 cut(s) 249
CviAII CATG 4 cut(s) 405, 415, 620, 826
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 4 cut(s) 18, 533, 604, 813
DpnI GATC 6 cut(s) 50, 234, 246, 538, 577, 1087
DpnII GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
Eco31I GGTCTC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 844
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 4 cut(s) 408, 418, 623, 829
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 404, 414, 619, 825
FspBI CTAG 2 cut(s) 837, 935
GlaI GCGC 3 cut(s) 305, 307, 683
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 63
HapII CCGG 1 cut(s) 213
HhaI GCGC 3 cut(s) 306, 308, 684
Hin1II CATG 4 cut(s) 408, 418, 623, 829
Hin6I GCGC 3 cut(s) 304, 306, 682
HinP1I GCGC 3 cut(s) 304, 306, 682
HindIII AAGCTT 3 cut(s) 207, 396, 815
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 227, 343
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 5 cut(s) 390, 536, 791, 834, 1090
Hpy188III TCNNGA 7 cut(s) 80, 191, 275, 297, 631, 904, 935
Hpy8I GTNNAC 1 cut(s) 585
HpyCH4III ACNGT 5 cut(s) 27, 712, 787, 896, 926
HpyCH4IV ACGT 1 cut(s) 1008
HpyCH4V TGCA 3 cut(s) 178, 394, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 206
HpyF3I CTNAG 4 cut(s) 18, 533, 604, 813
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 4 cut(s) 408, 418, 623, 829
HspAI GCGC 3 cut(s) 304, 306, 682
Kzo9I GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
LmnI GCTCC 1 cut(s) 82
LweI GCATC 2 cut(s) 25, 381
MaeI CTAG 2 cut(s) 837, 935
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 6 cut(s) 67, 446, 724, 920, 1009, 1093
MalI GATC 6 cut(s) 50, 234, 246, 538, 577, 1087
MboI GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
MboII GAAGA 7 cut(s) 260, 263, 555, 570, 693, 696, 791
MfeI CAATTG 1 cut(s) 1098
MflI RGATCY 2 cut(s) 536, 575
MlyI GAGTC 2 cut(s) 188, 901
MnlI CCTC 8 cut(s) 55, 127, 347, 613, 709, 739, 796, 861
MseI TTAA 3 cut(s) 357, 543, 743
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 846
MunI CAATTG 1 cut(s) 1098
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 139, 206
NdeII GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
NlaIII CATG 4 cut(s) 408, 418, 623, 829
NlaIV GGNNCC 2 cut(s) 335, 668
NmuCI GTSAC 2 cut(s) 920, 1093
NspI RCATGY 1 cut(s) 408
PauI GCGCGC 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 295
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 8 cut(s) 104, 137, 221, 278, 291, 511, 829, 965
Ple19I CGATCG 1 cut(s) 247
PleI GAGTC 2 cut(s) 188, 901
PpsI GAGTC 2 cut(s) 188, 901
PsiI TTATAA 1 cut(s) 1064
Psp6I CCWGG 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 737
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 2 cut(s) 335, 668
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 2 cut(s) 536, 575
PteI GCGCGC 1 cut(s) 304
PvuI CGATCG 1 cut(s) 247
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 3 cut(s) 357, 543, 743
Sau3AI GATC 6 cut(s) 48, 232, 244, 536, 575, 1085
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 2 cut(s) 188, 901
ScrFI CCNGG 1 cut(s) 846
SfaNI GCATC 2 cut(s) 25, 381
SfcI CTRYAG 2 cut(s) 72, 432
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SsiI CCGC 2 cut(s) 421, 800
SspI AATATT 1 cut(s) 915
SspMI CTAG 2 cut(s) 837, 935
StyD4I CCNGG 1 cut(s) 844
TaaI ACNGT 5 cut(s) 27, 712, 787, 896, 926
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 8 cut(s) 47, 107, 168, 192, 243, 298, 660, 997
TaqII GACCGA 1 cut(s) 539
TfiI GAWTC 8 cut(s) 104, 137, 221, 278, 291, 511, 829, 965
Tru1I TTAA 3 cut(s) 357, 543, 743
Tru9I TTAA 3 cut(s) 357, 543, 743
TscAI CASTG 2 cut(s) 32, 700
TseFI GTSAC 2 cut(s) 920, 1093
Tsp45I GTSAC 2 cut(s) 920, 1093
TspDTI ATGAA 4 cut(s) 360, 507, 842, 982
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 32, 700
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 1 cut(s) 989
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 1 cut(s) 408
XspI CTAG 2 cut(s) 837, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.