AT4G02740

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004316
Physical Location & Seq
Reverse (-)
1217589 .. 1221019
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02740.1

Sequence Viewer

Length: 1440 bp
ATGGATCCTCCCACCCAAAGCCATAACTCGGTCCGTACTGTTCCAGGCTCGAATCATAGCCACACCGATTTGATTATCTCATCGTTCCTTTCGTTTCCAGATTCCTCTCCGATCTCCATTAGCAATTCCTTCGATCGAGTCCTTGATAGAGCTCTCGCCTCCGCTTCCGCTGATGAATCCGTTCAGGATCGTCTCGTCGATCGTACTCTCGAACTCGCGTCGCTTCTTCTCGATTCCACTAGGCGTTGCTTCCGTAAGCGAGCTTCTGTTCACAATTCCAATTCCTGGTCCCTCCCTCCAGAACTTACCATTAAGGTCTTTTCGATGCTTGATACAAAGTCTATGATGCAAGCAGCTGTGTGCTGCACCATGTTCAATAAATGTGCAATGGACCGTTTATGTTACTCCCACATCGACCTGACAACGTCTGCTAGATATGCTGATAAAGGAGTTGTGTCTACTATGATCAATCGGGCTGGTAAAGAACTCAGATCCCTGAAACTTGGTCGTGTTGTTCGTACAGCTGGATCTGATTCTGCTGCACCTTTGCTTAGCGGATCTTGTCTTTCCCCACTAGCATATAATCATGGTTTTCTTGGGAGTCGCTTGAGAAGCCTACGGCTTTACAATCTCAGACCTATAAAATACAGGTCCTTATGCGATGCGTTGTCAGTTTGTCCAAATATCACTGATCTGAGGATTGTGGGATTGTATAACTTAACCGAGGAGCTATTTAATTCATTGACAAAAAAATGCCGCTTAATAGAGCACCTGTTCTTAGAGACCTACGGTTATCCACGTACGTTAGAGAGTAAAGCAGGATCATCCTTAGTAGAGTTTGTGACCAATTGCCCCAACTTAACGTCCCTGACGCTCATACGTTTTGGACTAACCGATGACTGGGCCCGAAATCTTGCTGAGAGTTGTCGTAAACTGAAGTACCTGAATTTGTCCCGATCACCTACAATCAAGGGTCGTTTTTTGAGGGAGTTGGGACTTAGCTGCAAAGAAAATCTACTCAAGACTCTAATATTGCGCAGCTGCCCAAAACTACAGGAGAAAGAAGTATTGGAATTCTGTAACTCACTACTCACAGGGAACTTCAAATCCATTCGGCAAATTGATGTTTCAAGTAACAGTGGATTAGCTTCTTCAGACAGGGGCAAGAGATGTAACAAACCAAACTTTCCTCTGGAGAGGCTGAAAGAAGAAAGATCAGATGTCACATTTGTGGCGGATTTTCCATCAACAAGTTCAGGAAAGCGTTATGGTGTGTGCGATGAAGAAGAGCTGAGGCTGATAGAGATGATGGAAGCTGAGGACGATGAAGTGGACGAAGAAGATGACTCGGATGACGACACTGACGATGTATCGGATGAAGATGAGTCAGAAAATGATGATGACATGGGAATGGGATTTGATGTCGATTATTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

479

Amino Acids

53.68

Weight (kDa)

5.35

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 96 - 140 9.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1037
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 1 cut(s) 458
AccII CGCG 1 cut(s) 218
AciI CCGC 5 cut(s) 162, 168, 555, 757, 1235
AclWI GGATC 6 cut(s) 12, 195, 486, 535, 565, 829
AcsI RAATTY 2 cut(s) 946, 1073
AcuI CTGAAG 2 cut(s) 956, 1137
AfaI GTAC 5 cut(s) 37, 205, 520, 802, 941
AfiI CCNNNNNNNGG 3 cut(s) 28, 285, 900
AgsI TTSAA 3 cut(s) 376, 1105, 1131
AjnI CCWGG 2 cut(s) 43, 284
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AleI CACNNNNGTG 1 cut(s) 1229
AloI GAACNNNNNNTCC 2 cut(s) 1091, 1123
Alw21I GWGCWC 2 cut(s) 154, 771
Alw26I GTCTC 2 cut(s) 197, 776
AlwI GGATC 6 cut(s) 12, 195, 486, 535, 565, 829
AoxI GGCC 1 cut(s) 903
ApaI GGGCCC 1 cut(s) 907
ApeKI GCWGC 6 cut(s) 353, 363, 539, 1002, 1038, 1041
ApoI RAATTY 2 cut(s) 946, 1073
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 1038
AspS9I GGNCC 6 cut(s) 31, 288, 391, 651, 903, 904
AsuHPI GGTGA 1 cut(s) 951
AvaII GGWCC 4 cut(s) 31, 288, 391, 651
BaeGI GKGCMC 1 cut(s) 907
BaeI ACNNNNGTAYC 2 cut(s) 923, 956
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 154, 907
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
Bbv12I GWGCWC 2 cut(s) 154, 771
BbvCI CCTCAGC 2 cut(s) 1292, 1317
BbvI GCAGC 6 cut(s) 350, 365, 526, 989, 1028, 1050
BccI CCATC 2 cut(s) 1252, 1303
BceAI ACGGC 1 cut(s) 635
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 2 cut(s) 45, 286
BclI TGATCA 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 197, 776
BfaI CTAG 3 cut(s) 240, 432, 575
BfmI CTRYAG 1 cut(s) 1052
BisI GCNGC 7 cut(s) 354, 364, 540, 757, 1003, 1039, 1042
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 7 cut(s) 355, 365, 541, 758, 1004, 1040, 1043
Bme1390I CCNGG 2 cut(s) 45, 286
Bme18I GGWCC 4 cut(s) 31, 288, 391, 651
BmgT120I GGNCC 6 cut(s) 31, 288, 391, 651, 903, 904
BmiI GGNNCC 3 cut(s) 6, 290, 905
BmrFI CCNGG 2 cut(s) 45, 286
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 3 cut(s) 315, 336, 652
BmuI ACTGGG 1 cut(s) 910
BpmI CTGGAG 2 cut(s) 282, 1214
Bpu10I CCTNAGC 2 cut(s) 1292, 1317
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 628, 1004
BsaAI YACGTR 1 cut(s) 800
BsaI GGTCTC 1 cut(s) 776
BsaJI CCNNGG 1 cut(s) 723
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 285, 900
Bse1I ACTGG 1 cut(s) 905
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 45, 286
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 3 cut(s) 824, 1357, 1381
BseLI CCNNNNNNNGG 3 cut(s) 28, 285, 900
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 6 cut(s) 502, 646, 686, 909, 1283, 1308
BseNI ACTGG 1 cut(s) 905
BseRI GAGGAG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 6 cut(s) 350, 365, 526, 989, 1028, 1050
BsgI GTGCAG 2 cut(s) 349, 525
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 2 cut(s) 136, 202
BshFI GGCC 1 cut(s) 905
BsiEI CGRYCG 2 cut(s) 136, 202
BsiHKAI GWGCWC 2 cut(s) 154, 771
BsiWI CGTACG 1 cut(s) 800
BslFI GGGAC 4 cut(s) 274, 850, 937, 1008
BslI CCNNNNNNNGG 3 cut(s) 28, 285, 900
BsmAI GTCTC 2 cut(s) 197, 776
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 4 cut(s) 274, 850, 937, 1008
BsnI GGCC 1 cut(s) 905
Bso31I GGTCTC 1 cut(s) 776
Bsp120I GGGCCC 1 cut(s) 903
Bsp1286I GDGCHC 3 cut(s) 154, 771, 907
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 5 cut(s) 162, 168, 555, 757, 1235
BspANI GGCC 1 cut(s) 905
BspCNI CTCAG 6 cut(s) 501, 645, 687, 910, 1284, 1309
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 6, 290, 905
BspPI GGATC 6 cut(s) 12, 195, 486, 535, 565, 829
BspQI GCTCTTC 1 cut(s) 1281
BspTNI GGTCTC 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 905
BssECI CCNNGG 1 cut(s) 723
Bst2UI CCWGG 2 cut(s) 45, 286
Bst4CI ACNGT 4 cut(s) 40, 395, 791, 1139
Bst6I CTCTTC 1 cut(s) 1281
BstBAI YACGTR 1 cut(s) 800
BstC8I GCNNGC 2 cut(s) 261, 351
BstF5I GGATG 3 cut(s) 824, 1357, 1381
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 1038
BstMAI GTCTC 2 cut(s) 197, 776
BstMCI CGRYCG 2 cut(s) 136, 202
BstMWI GCNNNNNNNGC 2 cut(s) 437, 612
BstNI CCWGG 2 cut(s) 45, 286
BstSCI CCNGG 2 cut(s) 43, 284
BstSFI CTRYAG 1 cut(s) 1052
BstSLI GKGCMC 1 cut(s) 907
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 6 cut(s) 350, 365, 526, 989, 1028, 1050
BstX2I RGATCY 4 cut(s) 4, 491, 527, 557
BstYI RGATCY 4 cut(s) 4, 491, 527, 557
BsuRI GGCC 1 cut(s) 905
BtgZI GCGATG 2 cut(s) 675, 1293
BtsCI GGATG 3 cut(s) 824, 1357, 1381
BtsIMutI CAGTG 3 cut(s) 687, 1144, 1359
Cac8I GCNNGC 2 cut(s) 261, 351
CfoI GCGC 1 cut(s) 1038
Cfr13I GGNCC 6 cut(s) 31, 288, 391, 651, 903, 904
CpoI CGGWCCG 1 cut(s) 31
CseI GACGC 2 cut(s) 207, 880
Csp6I GTAC 5 cut(s) 36, 204, 519, 801, 940
CspI CGGWCCG 1 cut(s) 31
CviAII CATG 3 cut(s) 370, 587, 1405
CviQI GTAC 5 cut(s) 36, 204, 519, 801, 940
Eam1104I CTCTTC 1 cut(s) 1281
EarI CTCTTC 1 cut(s) 1281
EciI GGCGGA 1 cut(s) 1250
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 2 cut(s) 154, 907
Eco31I GGTCTC 1 cut(s) 776
Eco47I GGWCC 4 cut(s) 31, 288, 391, 651
Eco53kI GAGCTC 1 cut(s) 152
Eco57I CTGAAG 2 cut(s) 956, 1137
EcoICRI GAGCTC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 651
EcoRI GAATTC 1 cut(s) 1073
EcoRII CCWGG 2 cut(s) 43, 284
EcoT38I GRGCYC 2 cut(s) 154, 907
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 373, 590, 1408
FaqI GGGAC 4 cut(s) 274, 850, 937, 1008
FatI CATG 3 cut(s) 369, 586, 1404
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 7 cut(s) 354, 364, 540, 757, 1003, 1039, 1042
FokI GGATG 3 cut(s) 811, 1364, 1388
FriOI GRGCYC 2 cut(s) 154, 907
Fsp4HI GCNGC 7 cut(s) 354, 364, 540, 757, 1003, 1039, 1042
FspBI CTAG 3 cut(s) 240, 432, 575
FspI TGCGCA 1 cut(s) 1037
GlaI GCGC 1 cut(s) 1037
GluI GCNGC 7 cut(s) 354, 364, 540, 757, 1003, 1039, 1042
GsuI CTGGAG 2 cut(s) 282, 1214
HaeIII GGCC 1 cut(s) 905
HgaI GACGC 2 cut(s) 207, 880
HhaI GCGC 1 cut(s) 1038
Hin1II CATG 3 cut(s) 373, 590, 1408
Hin6I GCGC 1 cut(s) 1036
HinP1I GCGC 1 cut(s) 1036
HphI GGTGA 1 cut(s) 951
Hpy166II GTNNAC 4 cut(s) 271, 459, 932, 1333
Hpy188III TCNNGA 9 cut(s) 98, 185, 209, 230, 299, 954, 1021, 1193, 1257
Hpy8I GTNNAC 4 cut(s) 271, 459, 932, 1333
Hpy99I CGWCG 2 cut(s) 200, 223
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 4 cut(s) 40, 395, 791, 1139
HpyCH4IV ACGT 5 cut(s) 425, 799, 803, 863, 880
HpyCH4V TGCA 5 cut(s) 349, 366, 386, 542, 1005
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 612
HpySE526I ACGT 5 cut(s) 425, 799, 803, 863, 880
Hsp92II CATG 3 cut(s) 373, 590, 1408
HspAI GCGC 1 cut(s) 1036
Ksp22I TGATCA 1 cut(s) 465
LguI GCTCTTC 1 cut(s) 1281
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 6 cut(s) 350, 365, 526, 989, 1028, 1050
LweI GCATC 3 cut(s) 315, 336, 652
MaeI CTAG 3 cut(s) 240, 432, 575
MaeII ACGT 5 cut(s) 425, 799, 803, 863, 880
MaeIII GTNAC 6 cut(s) 401, 841, 1079, 1133, 1172, 1222
MboII GAAGA 8 cut(s) 218, 1143, 1220, 1295, 1298, 1349, 1352, 1391
MfeI CAATTG 1 cut(s) 847
MflI RGATCY 4 cut(s) 4, 491, 527, 557
MhlI GDGCHC 3 cut(s) 154, 771, 907
MluCI AATT 8 cut(s) 124, 274, 280, 736, 847, 946, 1073, 1119
MlyI GAGTC 5 cut(s) 147, 610, 1018, 1340, 1394
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 5 cut(s) 312, 719, 735, 761, 860
MslI CAYNNNNRTG 2 cut(s) 1229, 1409
MspA1I CMGCKG 4 cut(s) 170, 356, 524, 1041
MspR9I CCNGG 2 cut(s) 45, 286
MunI CAATTG 1 cut(s) 847
MvaI CCWGG 2 cut(s) 45, 286
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 437, 612
NlaIII CATG 3 cut(s) 373, 590, 1408
NlaIV GGNNCC 3 cut(s) 6, 290, 905
NmuCI GTSAC 2 cut(s) 841, 1222
NsbI TGCGCA 1 cut(s) 1037
OliI CACNNNNGTG 1 cut(s) 1229
PciSI GCTCTTC 1 cut(s) 1281
PcsI WCGNNNNNNNCGW 3 cut(s) 89, 514, 1362
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 5 cut(s) 52, 101, 176, 233, 533
Pfl23II CGTACG 1 cut(s) 800
PflFI GACNNNGTC 1 cut(s) 424
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 7 cut(s) 355, 365, 541, 758, 1004, 1040, 1043
Ple19I CGATCG 2 cut(s) 136, 202
PleI GAGTC 5 cut(s) 146, 609, 1018, 1340, 1393
PpsI GAGTC 5 cut(s) 146, 609, 1018, 1340, 1393
Ppu21I YACGTR 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 43, 284
PspGI CCWGG 2 cut(s) 43, 284
PspLI CGTACG 1 cut(s) 800
PspN4I GGNNCC 3 cut(s) 6, 290, 905
PspOMI GGGCCC 1 cut(s) 903
PspPI GGNCC 6 cut(s) 31, 288, 391, 651, 903, 904
PspPPI RGGWCCY 1 cut(s) 651
PsuI RGATCY 4 cut(s) 4, 491, 527, 557
PsyI GACNNNGTC 1 cut(s) 424
PvuI CGATCG 2 cut(s) 136, 202
PvuII CAGCTG 3 cut(s) 356, 524, 1041
RsaI GTAC 5 cut(s) 37, 205, 520, 802, 941
RsaNI GTAC 5 cut(s) 36, 204, 519, 801, 940
RseI CAYNNNNRTG 2 cut(s) 1229, 1409
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 1281
SaqAI TTAA 5 cut(s) 312, 719, 735, 761, 860
SatI GCNGC 7 cut(s) 354, 364, 540, 757, 1003, 1039, 1042
Sau96I GGNCC 6 cut(s) 31, 288, 391, 651, 903, 904
SchI GAGTC 5 cut(s) 147, 610, 1018, 1340, 1394
ScrFI CCNGG 2 cut(s) 45, 286
SduI GDGCHC 3 cut(s) 154, 771, 907
SfaNI GCATC 3 cut(s) 315, 336, 652
SfcI CTRYAG 1 cut(s) 1052
SinI GGWCC 4 cut(s) 31, 288, 391, 651
SmiMI CAYNNNNRTG 2 cut(s) 1229, 1409
SmlI CTYRAG 2 cut(s) 607, 1019
SmoI CTYRAG 2 cut(s) 607, 1019
Sse9I AATT 8 cut(s) 124, 274, 280, 736, 847, 946, 1073, 1119
SsiI CCGC 5 cut(s) 162, 168, 555, 757, 1235
SspI AATATT 1 cut(s) 1032
SspMI CTAG 3 cut(s) 240, 432, 575
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 43, 284
TaaI ACNGT 4 cut(s) 40, 395, 791, 1139
TaiI ACGT 5 cut(s) 428, 802, 806, 866, 883
TaqI TCGA 9 cut(s) 50, 132, 136, 198, 210, 231, 323, 414, 1425
TaqII GACCGA 1 cut(s) 19
TasI AATT 8 cut(s) 124, 274, 280, 736, 847, 946, 1073, 1119
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 5 cut(s) 52, 101, 176, 233, 533
Tru1I TTAA 5 cut(s) 312, 719, 735, 761, 860
Tru9I TTAA 5 cut(s) 312, 719, 735, 761, 860
TscAI CASTG 3 cut(s) 694, 1144, 1366
TseFI GTSAC 2 cut(s) 841, 1222
TseI GCWGC 6 cut(s) 353, 363, 539, 1002, 1038, 1041
Tsp45I GTSAC 2 cut(s) 841, 1222
TspDTI ATGAA 5 cut(s) 189, 729, 1296, 1341, 1392
TspGWI ACGGA 3 cut(s) 23, 169, 242
TspRI CASTG 3 cut(s) 694, 1144, 1366
Tth111I GACNNNGTC 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 4 cut(s) 31, 288, 391, 651
XapI RAATTY 2 cut(s) 946, 1073
XmiI GTMKAC 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 3 cut(s) 240, 432, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.