Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004316

Physical Location & Seq

Genomic Coordinates Forward (+)

5424946 .. 5427501

Gene Structure 2556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08535.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTTGATACAAAGTCCCTAATGCAAGCTTCTACATGCTTCACAATGTTCAATAAGTGTGCCATGGACCCTTTATGTTACTCTCATATTGACTTGACAAAAGCATTTAAATATGTTGATGACCGTGTTTTGCATACTTTGCTCAATCGTTCTGGAAAACAACTCAGATCCCTTAAACTTGGTCGTGTTGATGCTCCCGGATCTGTGTTTAGAAGTTCTTGTCTTCCTCCATTAATACATTATAGGAATAGTGCGAGCAGATCCCTTAAACTTGGTCGTGATGCTCCTAGTCCTGGATGTTTTTTTACAAGATCTTGTCTTGATCCACTAAAACTTACGGGGAATCTTTTGACAAGTCTACACATTTACTTTCTTGGATTCATGAACATGGATTCCTTATTGGATTCATTGTCAGCCTGCTCGAATCTAACCGATTTGAAGATTGTTGGAGTGAATGTTTTGTTAGAGCCTATATTAGAGTTACTTGCGAGAAAGTGTTGCTTGATAGAGCATCTGTTCTTAGATAACTGTTATCAAGGCATGATAACATATCCAACCATCAAATTGTTTGTGACCAACTGCCTCAAGATAACTTCTCTAACACTCCTAGATTTTAGGCTAAATGACGCAATGGCCCAAATCCTTGTTACGGGTTTTCGCATACTGAAATATATCAATCTATCCAACACAGCTGGAATCACTGGAAGCTTTTTGAGGAATTTGGGACATAGATCTAATGACAGTCCTCTACAGACACTAATACTACGTGATTGTTTTTCTCTTCAAGAGAGAGAAGTTGTGGAGTTTTTGAATTCACTAATCGGGGAAACGTCAGATCCATTAGATACATTGATGTATCAAGCAACAACGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

291

Amino Acids

32.6

Weight (kDa)

8.42

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02733 AT4G02735 AT4G02740 AT4G02740 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G08535 AT4G08535 AT4G08535
fragaria_vesca	FvH4_2g23360
malus_domestica	MD03G1263100.v1.1 MD11G1283900.v1.1
prunus_persica	Prupe.8G239400_v2.0.a1
pyrus_communis	pycom03g21060 pycom11g25130
rosa_chinensis	RchiOBHm_Chr6g0290801
rosa_laevigata	RLG00000012172
rosa_multiflora	Rmu_ssc0000069.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176720
rosa_rugosa	Rorug06G0214800
rosa_samantha	Rh6AG325500 Rh6BG333100 Rh6CG338700 Rh6DG326200
rosa_wichuraiana	Rw6G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	358
AclWI	GGATC	5 cut(s)	162, 208, 255, 317, 830
AcsI	RAATTY	2 cut(s)	718, 811
AfiI	CCNNNNNNNGG	2 cut(s)	293, 649
AgsI	TTSAA	4 cut(s)	52, 439, 785, 811
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	29, 692, 708
AluI	AGCT	3 cut(s)	29, 692, 708
AlwI	GGATC	5 cut(s)	162, 208, 255, 317, 830
AoxI	GGCC	1 cut(s)	633
ApoI	RAATTY	2 cut(s)	718, 811
AseI	ATTAAT	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	67, 634
AsuC2I	CCSGG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	215
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	2 cut(s)	288, 608
BfmI	CTRYAG	1 cut(s)	749
BglII	AGATCT	2 cut(s)	311, 731
Bme1390I	CCNGG	2 cut(s)	198, 294
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 634
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	198, 294
BmsI	GCATC	3 cut(s)	181, 271, 520
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	767
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 649
Bse1I	ACTGG	1 cut(s)	706
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	293, 649
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	706
BshFI	GGCC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	2 cut(s)	293, 649
BsmFI	GGGAC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	635
Bsp143I	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
Bsp19I	CCATGG	1 cut(s)	63
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	5 cut(s)	162, 208, 255, 317, 830
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	125, 530, 743, 871
Bst6I	CTCTTC	1 cut(s)	786
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	27, 256, 418
BstDEI	CTNAG	2 cut(s)	164, 520
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	7 cut(s)	170, 203, 263, 314, 325, 734, 838
BstMBI	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	196, 292
BstSFI	CTRYAG	1 cut(s)	749
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	6 cut(s)	167, 200, 260, 311, 731, 835
BstYI	RGATCY	6 cut(s)	167, 200, 260, 311, 731, 835
BsuRI	GGCC	1 cut(s)	635
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	3 cut(s)	27, 256, 418
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	67, 634
CseI	GACGC	1 cut(s)	635
CviAII	CATG	5 cut(s)	36, 64, 382, 388, 541
CviJI	RGCY	7 cut(s)	29, 416, 469, 619, 635, 692, 708
CviKI_1	RGCY	7 cut(s)	29, 416, 469, 619, 635, 692, 708
DdeI	CTNAG	2 cut(s)	164, 520
DpnI	GATC	7 cut(s)	169, 202, 262, 313, 324, 733, 837
DpnII	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
DraI	TTTAAA	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	5 cut(s)	39, 67, 385, 391, 544
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	5 cut(s)	35, 63, 381, 387, 540
FblI	GTMKAC	1 cut(s)	358
FokI	GGATG	1 cut(s)	309
FspBI	CTAG	2 cut(s)	288, 608
HaeIII	GGCC	1 cut(s)	635
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	635
Hin1II	CATG	5 cut(s)	39, 67, 385, 391, 544
HindIII	AAGCTT	2 cut(s)	27, 706
HinfI	GANTC	6 cut(s)	343, 378, 392, 404, 424, 696
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	167, 835
Hpy188III	TCNNGA	6 cut(s)	153, 278, 320, 382, 586, 785
Hpy8I	GTNNAC	1 cut(s)	359
HpyCH4III	ACNGT	4 cut(s)	125, 530, 743, 871
HpyCH4IV	ACGT	2 cut(s)	766, 830
HpyCH4V	TGCA	2 cut(s)	25, 133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	164, 520
HpySE526I	ACGT	2 cut(s)	766, 830
Hsp92II	CATG	5 cut(s)	39, 67, 385, 391, 544
Kzo9I	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
LmnI	GCTCC	2 cut(s)	199, 289
LpnPI	CCDG	7 cut(s)	138, 211, 279, 306, 430, 678, 687
LweI	GCATC	3 cut(s)	181, 271, 520
MaeI	CTAG	2 cut(s)	288, 608
MaeII	ACGT	2 cut(s)	766, 830
MaeIII	GTNAC	4 cut(s)	77, 480, 571, 646
MalI	GATC	7 cut(s)	169, 202, 262, 313, 324, 733, 837
MboI	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
MboII	GAAGA	3 cut(s)	215, 451, 773
MflI	RGATCY	6 cut(s)	167, 200, 260, 311, 731, 835
MluCI	AATT	3 cut(s)	563, 718, 811
MmeI	TCCRAC	3 cut(s)	427, 578, 708
MnlI	CCTC	4 cut(s)	237, 593, 708, 756
MseI	TTAA	4 cut(s)	108, 174, 233, 267
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	198, 294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
NlaIII	CATG	5 cut(s)	39, 67, 385, 391, 544
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	39
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	6 cut(s)	343, 378, 392, 404, 424, 696
PfoI	TCCNGGA	2 cut(s)	196, 292
Ppu21I	YACGTR	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	67, 634
PsuI	RGATCY	6 cut(s)	167, 200, 260, 311, 731, 835
PvuII	CAGCTG	1 cut(s)	692
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	4 cut(s)	108, 174, 233, 267
Sau3AI	GATC	7 cut(s)	167, 200, 260, 311, 322, 731, 835
Sau96I	GGNCC	2 cut(s)	67, 634
ScrFI	CCNGG	2 cut(s)	198, 294
SetI	ASST	5 cut(s)	31, 694, 710, 769, 833
SfaNI	GCATC	3 cut(s)	181, 271, 520
SfcI	CTRYAG	1 cut(s)	749
SinI	GGWCC	1 cut(s)	67
SmiI	ATTTAAAT	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	563, 718, 811
SspMI	CTAG	2 cut(s)	288, 608
StyD4I	CCNGG	2 cut(s)	196, 292
StyI	CCWWGG	1 cut(s)	63
SwaI	ATTTAAAT	1 cut(s)	109
TaaI	ACNGT	4 cut(s)	125, 530, 743, 871
TaiI	ACGT	2 cut(s)	769, 833
TaqI	TCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	563, 718, 811
TfiI	GAWTC	6 cut(s)	343, 378, 392, 404, 424, 696
Tru1I	TTAA	4 cut(s)	108, 174, 233, 267
Tru9I	TTAA	4 cut(s)	108, 174, 233, 267
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	3 cut(s)	370, 396, 398
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	233
XapI	RAATTY	2 cut(s)	718, 811
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	2 cut(s)	288, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.