Rorug06G0214800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004316
Physical Location & Seq
Reverse (-)
34317062 .. 34320821
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0214800.1

Sequence Viewer

Length: 630 bp
ATGGCGGACAGCCTCTGGAACCGTCAGCGGCAACTGCTTCCTTCCGGTGGTGTTAAACGACTTCGTTCTGACTACGACCTCCCAACGTCCGGTCTGTATTCAGGTCATGAGATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCATAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCATATGACCGTTATCTTCAAAATGGGAAGCAAGTGTCTTCAGATACCATGGTTGGAGTTGGATTGGGGCCTCTCCCAGTGGATGCAATGCCTAGACTAGCAGCTGGACGTGAAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCACGAGGAGGGAAGTAGCTTATATCTTTCGCCCCTTTGTGGGATATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACTTCATGGTGGTGATCCCCTTATCCTTTGTTTTGTGGATTTTGTAAATCCAGCCTGTGCTGCAACTGCCATGAGTGCTTTGCAAGGTTATAAAATGGATGAACACAATCCCGATTCTAACTACTTGCGGCTGCAGTTTTCTCGATTCCCAGGTCCAAGGTCTGGACATGGAACCCGTAGTAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

209

Amino Acids

23.09

Weight (kDa)

9.22

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 112 - 182 3.1e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 3 cut(s) 5, 28, 568
AclWI GGATC 2 cut(s) 190, 449
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 5 cut(s) 47, 89, 400, 401, 602
AgsI TTSAA 2 cut(s) 206, 344
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 4 cut(s) 120, 290, 305, 380
AluI AGCT 4 cut(s) 120, 290, 305, 380
AlwI GGATC 2 cut(s) 190, 449
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 3 cut(s) 287, 500, 571
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 254, 593
AsuHPI GGTGA 1 cut(s) 464
AvaII GGWCC 1 cut(s) 593
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BauI CACGAG 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 299, 487, 558
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 591
BciVI GTATCC 1 cut(s) 160
BfaI CTAG 2 cut(s) 279, 284
BfmI CTRYAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 5 cut(s) 29, 288, 501, 569, 572
BlsI GCNGC 5 cut(s) 30, 289, 502, 570, 573
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 1 cut(s) 593
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 254, 593
BmiI GGNNCC 3 cut(s) 20, 255, 613
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 3 cut(s) 102, 259, 310
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 234, 589, 596
BsaWI WCCGGW 2 cut(s) 44, 89
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 89, 400, 401, 602
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 234, 589, 596
BseGI GGATG 3 cut(s) 139, 274, 544
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 5 cut(s) 47, 89, 400, 401, 602
BseMI GCAATG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 382
BseXI GCAGC 3 cut(s) 299, 487, 558
BshFI GGCC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 45, 90
BslI CCNNNNNNNGG 5 cut(s) 47, 89, 400, 401, 602
BsnI GGCC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 139, 182, 454
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 5, 28, 568
BspANI GGCC 1 cut(s) 256
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 20, 255, 613
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 2 cut(s) 190, 449
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 234, 589, 596
BssMI GATC 3 cut(s) 139, 182, 454
BssSI CACGAG 1 cut(s) 364
BssT1I CCWWGG 2 cut(s) 234, 596
Bst2BI CACGAG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 23, 197
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 139, 274, 544
BstKTI GATC 3 cut(s) 142, 185, 457
BstMBI GATC 3 cut(s) 139, 182, 454
BstMWI GCNNNNNNNGC 4 cut(s) 34, 500, 506, 515
BstNI CCWGG 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 1 cut(s) 572
BstV1I GCAGC 3 cut(s) 299, 487, 558
BstV2I GAAGAC 1 cut(s) 216
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 3 cut(s) 139, 274, 544
BtsIMutI CAGTG 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 15
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 254, 593
CviAII CATG 5 cut(s) 107, 235, 446, 511, 608
DpnI GATC 3 cut(s) 141, 184, 456
DpnII GATC 3 cut(s) 139, 182, 454
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 234, 596
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 234, 596
ErhI CCWWGG 2 cut(s) 234, 596
FaeI CATG 5 cut(s) 110, 238, 449, 514, 611
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 5 cut(s) 106, 234, 445, 510, 607
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 5 cut(s) 29, 288, 501, 569, 572
FokI GGATG 3 cut(s) 146, 281, 551
Fsp4HI GCNGC 5 cut(s) 29, 288, 501, 569, 572
FspBI CTAG 2 cut(s) 279, 284
GluI GCNGC 5 cut(s) 29, 288, 501, 569, 572
HaeIII GGCC 1 cut(s) 256
HapII CCGG 2 cut(s) 45, 90
Hin1II CATG 5 cut(s) 110, 238, 449, 514, 611
HinfI GANTC 3 cut(s) 434, 554, 585
HpaII CCGG 2 cut(s) 45, 90
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 70, 229
Hpy188III TCNNGA 6 cut(s) 16, 107, 356, 551, 582, 603
HpyAV CCTTC 2 cut(s) 51, 338
HpyCH4III ACNGT 2 cut(s) 23, 197
HpyCH4IV ACGT 2 cut(s) 86, 295
HpyCH4V TGCA 4 cut(s) 272, 503, 523, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 500, 506, 515
HpySE526I ACGT 2 cut(s) 86, 295
Hsp92II CATG 5 cut(s) 110, 238, 449, 514, 611
Kzo9I GATC 3 cut(s) 139, 182, 454
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 299, 487, 558
LweI GCATC 3 cut(s) 102, 259, 310
MaeI CTAG 2 cut(s) 279, 284
MaeII ACGT 2 cut(s) 86, 295
MalI GATC 3 cut(s) 141, 184, 456
MboI GATC 3 cut(s) 139, 182, 454
MboII GAAGA 2 cut(s) 194, 216
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 2 cut(s) 220, 226
MnlI CCTC 8 cut(s) 23, 89, 267, 360, 363, 363, 411, 618
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 450
MspA1I CMGCKG 2 cut(s) 28, 290
MspI CCGG 2 cut(s) 45, 90
MspR9I CCNGG 1 cut(s) 591
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 4 cut(s) 34, 500, 506, 515
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 139, 182, 454
NlaIII CATG 5 cut(s) 110, 238, 449, 514, 611
NlaIV GGNNCC 3 cut(s) 20, 255, 613
PagI TCATGA 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 554, 585
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 5 cut(s) 30, 289, 502, 570, 573
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 3 cut(s) 20, 255, 613
PspPI GGNCC 2 cut(s) 254, 593
PstI CTGCAG 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 5 cut(s) 29, 288, 501, 569, 572
Sau3AI GATC 3 cut(s) 139, 182, 454
Sau96I GGNCC 2 cut(s) 254, 593
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 1 cut(s) 591
SfaNI GCATC 3 cut(s) 102, 259, 310
SfcI CTRYAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 450
Sse9I AATT 1 cut(s) 177
SsiI CCGC 3 cut(s) 5, 28, 568
SspMI CTAG 2 cut(s) 279, 284
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 2 cut(s) 234, 596
TaaI ACNGT 2 cut(s) 23, 197
TaiI ACGT 2 cut(s) 89, 298
TaqI TCGA 1 cut(s) 583
TasI AATT 1 cut(s) 177
TauI GCSGC 2 cut(s) 31, 571
TfiI GAWTC 2 cut(s) 554, 585
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 270
TseI GCWGC 3 cut(s) 287, 500, 571
TspDTI ATGAA 2 cut(s) 434, 555
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 279, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.