Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004316

Physical Location & Seq

Genomic Coordinates Reverse (-)

16348588 .. 16352600

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGCTCGATACACAAAGCCTATGCTATGCTGCAGCTACTTGTTCCATGTTTAATAAATGTGCCATGGATCCTTCTTGCTATGCCAATATTGACTTGACAACAGTTGTTCCAAAAGTTAACAATGCAGTAGTTTCCACAATGATTCACCGGGCTGGAAAAGCTCTCCAGTCTCTTAAGCTTGGTGTAGTAGTTCCAGGCCCGACGACGTCACTTGGATCTTGTCAGCCCTTAGTTTATACTATCCGGAACTCTGTAGATGTATCTAACTTTTCATGGAATGATAAGAGATCCAGACAGGGGAAGGAGTCATCGATTCTTTCCAGATCCTGTTTGAGCCCTCTAGGTGGGGACAGTGGTGCTCCAGGGGCTCTTTTGAGAAAATTGCACCTTTACAATATTGAAAGAATGGATAATGCATCACTTTGTGGTGCATTAGCGGCCTGCCCATCTCTCATTGATCTGGAAATTGTTGGCCTTCATGTGGAACTGAGGCAGACATTGGTGTCAGTGAGCGCAAACTGTCACTTAATTGAGCGTTTGTTCTTTGAATCCTCTAAATCAGGTAGAGATGACAGTTTGAAATCACCAGCCTGCATTGAGCTTGTGAATAATTGCCCTCATGTAACTTCATTATCCCTCAGAGGTTTTAAACTGCATGATTATAAAGTTCGTATACTTATTAAGGGATTTAGAAAACTAAAGTATGTTGACTTTTCAACATCTTACTCTATCACTGGGTCATTTCTGAGGAACCTTGGCAGCAACACAGGTGGAAATCTGTTGGAAGTTGTGATTTTACGGGATTGCATGCATCTGAAAGTGGCGGAAGTTGATCGGTTGCTGAATGCAGTTCTGTCTGGGGATTTCAAGCTCCTTAGACATCTTGACATATCTAATAGGGAAGGCATGGCATCTGAGGGTGACTGGTATTATGAAAGATGCTACAGCTTGAGTGTCAATCCCTTAAAGCAGGTTTTGGAACAAAGGCCTCATCTCTGCATACTAGCCGAGTTTCCATCCGAAGGAAGTTTCGCCGACAGTGATCAAATGTTTGACAGTGAGCCATATAGCGATATCAGTCTGCCATCACAGATGAGCACTCATACGTCTGATGGTTCAATGTTTGTGAGTTTTTCCGAGAGTAGCTACAATAGTGATCATGGTAGTGGCAACGAGGATGCTCTGGATGCTAGTTATGTACTTTATGAGGAAAGCTCAGATGAGGTAGAGACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

412

Amino Acids

45.29

Weight (kDa)

5.49

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02733 AT4G02735 AT4G02740 AT4G02740 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G02760 AT4G08535 AT4G08535 AT4G08535
fragaria_vesca	FvH4_2g23360
malus_domestica	MD03G1263100.v1.1 MD11G1283900.v1.1
prunus_persica	Prupe.8G239400_v2.0.a1
pyrus_communis	pycom03g21060 pycom11g25130
rosa_chinensis	RchiOBHm_Chr6g0290801
rosa_laevigata	RLG00000012172
rosa_multiflora	Rmu_ssc0000069.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176720
rosa_rugosa	Rorug06G0214800
rosa_samantha	Rh6AG325500 Rh6BG333100 Rh6CG338700 Rh6DG326200
rosa_wichuraiana	Rw6G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AasI	GACNNNNNNGTC	1 cut(s)	502
AatII	GACGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	961
AccI	GTMKAC	1 cut(s)	673
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	2 cut(s)	437, 824
AclWI	GGATC	5 cut(s)	62, 75, 223, 282, 318
AcyI	GRCGYC	1 cut(s)	206
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	1200
AfiI	CCNNNNNNNGG	4 cut(s)	297, 344, 481, 1022
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	6 cut(s)	401, 548, 580, 717, 868, 1119
AjnI	CCWGG	2 cut(s)	193, 361
AluBI	AGCT	8 cut(s)	35, 161, 178, 601, 871, 948, 1146, 1215
AluI	AGCT	8 cut(s)	35, 161, 178, 601, 871, 948, 1146, 1215
Alw21I	GWGCWC	2 cut(s)	361, 1100
Alw26I	GTCTC	2 cut(s)	174, 1223
AlwI	GGATC	5 cut(s)	62, 75, 223, 282, 318
AlwNI	CAGNNNCTG	1 cut(s)	327
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	4 cut(s)	196, 438, 472, 986
ApeKI	GCWGC	3 cut(s)	29, 32, 759
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	137, 576, 932
BamHI	GGATCC	1 cut(s)	67
BanII	GRGCYC	2 cut(s)	338, 370
Bbv12I	GWGCWC	2 cut(s)	361, 1100
BbvI	GCAGC	3 cut(s)	16, 44, 771
BccI	CCATC	4 cut(s)	454, 1024, 1093, 1106
BciT130I	CCWGG	2 cut(s)	195, 363
BclI	TGATCA	2 cut(s)	1042, 1156
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	174, 1223
BfaI	CTAG	3 cut(s)	341, 1004, 1191
BfmI	CTRYAG	3 cut(s)	30, 252, 943
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	961
BisI	GCNGC	4 cut(s)	30, 33, 438, 760
BlsI	GCNGC	4 cut(s)	31, 34, 439, 761
Bme1390I	CCNGG	3 cut(s)	149, 195, 363
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	69, 752
BmrFI	CCNGG	3 cut(s)	149, 195, 363
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	6 cut(s)	425, 820, 920, 929, 1168, 1177
BmuI	ACTGGG	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	1199, 1231
BpmI	CTGGAG	2 cut(s)	149, 345
BpuEI	CTTGAG	1 cut(s)	970
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	63, 362, 754
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 344, 481, 1022
Bse1I	ACTGG	3 cut(s)	166, 739, 929
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	195, 363
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	63, 362, 754
BseGI	GGATG	3 cut(s)	1016, 1183, 1192
BseLI	CCNNNNNNNGG	4 cut(s)	297, 344, 481, 1022
BseMII	CTCAG	5 cut(s)	479, 652, 737, 906, 1230
BseNI	ACTGG	3 cut(s)	166, 739, 929
BseXI	GCAGC	3 cut(s)	16, 44, 771
BshFI	GGCC	4 cut(s)	198, 440, 474, 988
BshVI	ATCGAT	1 cut(s)	311
BsiHKAI	GWGCWC	2 cut(s)	361, 1100
BsiSI	CCGG	2 cut(s)	148, 244
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	4 cut(s)	297, 344, 481, 1022
BsmAI	GTCTC	2 cut(s)	174, 1223
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	850
BsnI	GGCC	4 cut(s)	198, 440, 474, 988
Bsp1286I	GDGCHC	4 cut(s)	338, 361, 370, 1100
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	437, 824
BspANI	GGCC	4 cut(s)	198, 440, 474, 988
BspCNI	CTCAG	5 cut(s)	480, 651, 738, 907, 1229
BspDI	ATCGAT	1 cut(s)	311
BspEI	TCCGGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	69, 752
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	5 cut(s)	62, 75, 223, 282, 318
BspTI	CTTAAG	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	166, 739, 929
BssECI	CCNNGG	3 cut(s)	63, 362, 754
BssMI	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
BssNAI	GTATAC	1 cut(s)	674
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	63, 754
Bst1107I	GTATAC	1 cut(s)	674
Bst2UI	CCWGG	2 cut(s)	195, 363
Bst4CI	ACNGT	6 cut(s)	103, 353, 521, 575, 1040, 1058
BstACI	GRCGYC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	442, 592, 809
BstDEI	CTNAG	7 cut(s)	229, 488, 638, 746, 875, 915, 1216
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	1016, 1183, 1192
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	8 cut(s)	70, 218, 290, 326, 460, 835, 1045, 1159
BstMAI	GTCTC	2 cut(s)	174, 1223
BstMBI	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 365, 437, 1187
BstNI	CCWGG	2 cut(s)	195, 363
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	3 cut(s)	147, 193, 361
BstSFI	CTRYAG	3 cut(s)	30, 252, 943
BstV1I	GCAGC	3 cut(s)	16, 44, 771
BstX2I	RGATCY	4 cut(s)	67, 215, 287, 323
BstYI	RGATCY	4 cut(s)	67, 215, 287, 323
BstZ17I	GTATAC	1 cut(s)	674
Bsu15I	ATCGAT	1 cut(s)	311
BsuRI	GGCC	4 cut(s)	198, 440, 474, 988
BsuTUI	ATCGAT	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	1016, 1183, 1192
BtsIMutI	CAGTG	5 cut(s)	358, 513, 732, 1045, 1063
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	3 cut(s)	442, 592, 809
CaiI	CAGNNNCTG	1 cut(s)	327
CfoI	GCGC	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	1199
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviAII	CATG	9 cut(s)	46, 64, 273, 479, 620, 656, 808, 907, 1160
CviQI	GTAC	1 cut(s)	1199
DdeI	CTNAG	7 cut(s)	229, 488, 638, 746, 875, 915, 1216
DpnI	GATC	8 cut(s)	69, 217, 289, 325, 459, 834, 1044, 1158
DpnII	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
DraI	TTTAAA	1 cut(s)	649
DraIII	CACNNNGTG	1 cut(s)	425
DrdI	GACNNNNNNGTC	1 cut(s)	502
DseDI	GACNNNNNNGTC	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	839
Eco130I	CCWWGG	2 cut(s)	63, 754
Eco147I	AGGCCT	1 cut(s)	988
Eco24I	GRGCYC	2 cut(s)	338, 370
Eco32I	GATATC	1 cut(s)	1075
EcoRII	CCWGG	2 cut(s)	193, 361
EcoRV	GATATC	1 cut(s)	1075
EcoT14I	CCWWGG	2 cut(s)	63, 754
EcoT22I	ATGCAT	2 cut(s)	418, 813
EcoT38I	GRGCYC	2 cut(s)	338, 370
ErhI	CCWWGG	2 cut(s)	63, 754
FaeI	CATG	9 cut(s)	49, 67, 276, 482, 623, 659, 811, 910, 1163
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	9 cut(s)	45, 63, 272, 478, 619, 655, 807, 906, 1159
FbaI	TGATCA	2 cut(s)	1042, 1156
FblI	GTMKAC	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	30, 33, 438, 760
FokI	GGATG	3 cut(s)	1003, 1190, 1199
FriOI	GRGCYC	2 cut(s)	338, 370
Fsp4HI	GCNGC	4 cut(s)	30, 33, 438, 760
FspBI	CTAG	3 cut(s)	341, 1004, 1191
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	4 cut(s)	30, 33, 438, 760
GsuI	CTGGAG	2 cut(s)	149, 345
HaeIII	GGCC	4 cut(s)	198, 440, 474, 988
HapII	CCGG	2 cut(s)	148, 244
HhaI	GCGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	9 cut(s)	49, 67, 276, 482, 623, 659, 811, 910, 1163
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HincII	GTYRAC	2 cut(s)	118, 709
HindII	GTYRAC	2 cut(s)	118, 709
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	142, 305, 313, 548
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	148, 244
HphI	GGTGA	3 cut(s)	137, 576, 932
Hpy166II	GTNNAC	3 cut(s)	118, 674, 709
Hpy188I	TCNGA	8 cut(s)	641, 747, 816, 916, 1021, 1111, 1138, 1219
Hpy188III	TCNNGA	6 cut(s)	244, 291, 321, 461, 884, 1184
Hpy8I	GTNNAC	3 cut(s)	118, 674, 709
Hpy99I	CGWCG	2 cut(s)	205, 208
HpyAV	CCTTC	5 cut(s)	81, 295, 485, 896, 1016
HpyCH4III	ACNGT	6 cut(s)	103, 353, 521, 575, 1040, 1058
HpyCH4IV	ACGT	2 cut(s)	206, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 365, 437, 1187
HpyF3I	CTNAG	7 cut(s)	229, 488, 638, 746, 875, 915, 1216
HpySE526I	ACGT	2 cut(s)	206, 1106
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	9 cut(s)	49, 67, 276, 482, 623, 659, 811, 910, 1163
HspAI	GCGC	1 cut(s)	513
Kpn2I	TCCGGA	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	1042, 1156
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
LmnI	GCTCC	2 cut(s)	364, 876
Lsp1109I	GCAGC	3 cut(s)	16, 44, 771
LweI	GCATC	6 cut(s)	425, 820, 920, 929, 1168, 1177
MaeI	CTAG	3 cut(s)	341, 1004, 1191
MaeII	ACGT	2 cut(s)	206, 1106
MaeIII	GTNAC	4 cut(s)	207, 521, 622, 920
MalI	GATC	8 cut(s)	69, 217, 289, 325, 459, 834, 1044, 1158
MboI	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
MflI	RGATCY	4 cut(s)	67, 215, 287, 323
MhlI	GDGCHC	4 cut(s)	338, 361, 370, 1100
MluCI	AATT	4 cut(s)	380, 465, 528, 610
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	762
Mph1103I	ATGCAT	2 cut(s)	418, 813
MroI	TCCGGA	1 cut(s)	243
MseI	TTAA	7 cut(s)	51, 117, 174, 527, 648, 681, 965
MslI	CAYNNNNRTG	1 cut(s)	1164
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	2 cut(s)	148, 244
MspR9I	CCNGG	3 cut(s)	149, 195, 363
Mva1269I	GAATGC	1 cut(s)	850
MvaI	CCWGG	2 cut(s)	195, 363
MwoI	GCNNNNNNNGC	4 cut(s)	158, 365, 437, 1187
NciI	CCSGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
NlaIII	CATG	9 cut(s)	49, 67, 276, 482, 623, 659, 811, 910, 1163
NlaIV	GGNNCC	2 cut(s)	69, 752
NmeAIII	GCCGAG	1 cut(s)	1033
NmuCI	GTSAC	3 cut(s)	207, 521, 920
NsiI	ATGCAT	2 cut(s)	418, 813
NspI	RCATGY	1 cut(s)	811
PaeI	GCATGC	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	988
PctI	GAATGC	1 cut(s)	850
PfeI	GAWTC	3 cut(s)	142, 313, 548
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	31, 34, 439, 761
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	193, 361
PspGI	CCWGG	2 cut(s)	193, 361
PspN4I	GGNNCC	2 cut(s)	69, 752
PspPI	GGNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	327
PsuI	RGATCY	4 cut(s)	67, 215, 287, 323
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	1200
RsaNI	GTAC	1 cut(s)	1199
RseI	CAYNNNNRTG	1 cut(s)	1164
SaqAI	TTAA	7 cut(s)	51, 117, 174, 527, 648, 681, 965
SatI	GCNGC	4 cut(s)	30, 33, 438, 760
Sau3AI	GATC	8 cut(s)	67, 215, 287, 323, 457, 832, 1042, 1156
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	3 cut(s)	149, 195, 363
SduI	GDGCHC	4 cut(s)	338, 361, 370, 1100
SfaNI	GCATC	6 cut(s)	425, 820, 920, 929, 1168, 1177
SfcI	CTRYAG	3 cut(s)	30, 252, 943
SmiMI	CAYNNNNRTG	1 cut(s)	1164
SmlI	CTYRAG	2 cut(s)	173, 949
SmoI	CTYRAG	2 cut(s)	173, 949
SphI	GCATGC	1 cut(s)	811
Sse9I	AATT	4 cut(s)	380, 465, 528, 610
SseBI	AGGCCT	1 cut(s)	988
SsiI	CCGC	2 cut(s)	437, 824
SspI	AATATT	2 cut(s)	88, 397
SspMI	CTAG	3 cut(s)	341, 1004, 1191
StuI	AGGCCT	1 cut(s)	988
StyD4I	CCNGG	3 cut(s)	147, 193, 361
StyI	CCWWGG	2 cut(s)	63, 754
TaaI	ACNGT	6 cut(s)	103, 353, 521, 575, 1040, 1058
TaiI	ACGT	2 cut(s)	209, 1109
TaqI	TCGA	2 cut(s)	6, 311
TasI	AATT	4 cut(s)	380, 465, 528, 610
TatI	WGTACW	1 cut(s)	1198
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	142, 313, 548
Tru1I	TTAA	7 cut(s)	51, 117, 174, 527, 648, 681, 965
Tru9I	TTAA	7 cut(s)	51, 117, 174, 527, 648, 681, 965
TscAI	CASTG	5 cut(s)	358, 513, 739, 1045, 1063
TseFI	GTSAC	3 cut(s)	207, 521, 920
TseI	GCWGC	3 cut(s)	29, 32, 759
Tsp45I	GTSAC	3 cut(s)	207, 521, 920
TspDTI	ATGAA	4 cut(s)	261, 467, 618, 948
TspRI	CASTG	5 cut(s)	358, 513, 739, 1045, 1063
Tth111I	GACNNNGTC	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	811
XmiI	GTMKAC	1 cut(s)	673
XspI	CTAG	3 cut(s)	341, 1004, 1191
ZraI	GACGTC	1 cut(s)	207
Zsp2I	ATGCAT	2 cut(s)	418, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.