Rh6AG325500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004316
Physical Location & Seq
Forward (+)
52606856 .. 52614383
7528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG325500.1

Sequence Viewer

Length: 1239 bp
ATGCTCGATACACAAAGCCTATGCTATGCTGCAGCTACTTGTTCAATGTTTAATAAATGTGCCATGGATCCTTCTTGCTATGCCAATATTGACTTGACAACGGTTGTTCCAAAAGTTAACAATGCAGTAGTTTCCACAATGATTCACCGGGCAGGGAAAGCTTTCCAGTCTCTTAAGCTTGGTGTAGTAGTTCCAGGCCCAACAACGTCACTTGGATCTTGTCAGCCCCTAGTTTATACTATCCGGAACTCTGTAGATGTATCTAACTTTTCATGGAATGATAAGAGATCCAGACAGGGGAAGGAGTCATCGATTCTTTCCAGATCCTGTTTGAGCCCTCTAGGTGGGGACAGTGGTGCTCCAGGGGCTCTTTTGAGAAAATTGCACCTTTACAATATTGAAAGAATGGATAATGCATCACTTTGTGGTGCATTAGCGGCCTGTCCATCTCTCATTGATCTGGAAATTGTTGGCCTTCATGTGGAACTGAGGCAGACATTGGTGTCAGTGAGCGCAAACTGTCACTTAATTGAGCGTTTGTTCTTTGAATCCTCTAAATCAGGTAGAGATGACAGTTTGAAATCACCAGCCTGCTTTGAGCTTGTGAATAATTGCCCTCATGTAACTTCATTATCCCTCAGAGGTTTTAAACTGCATGATTATAAAGTTCGTATACTTATTAAGGGATTTAGAAAACTGAAGTATGTTGACTTTTCAACATCTTACTCTATCACTGGGTCATTTCTGAGGAACCTTGGAAGCAACACAGGTGGAAATCTGTTGGAAGTTGTGATTTTACGGGATTGCATGCATCTGAAAGTGGCGGAAGTTGATCGGTTGCTGAATGCAGTTCTGTCTGGGGATTTCAAGCTCCTTAGACATCTTGACATATCTAATAGGGAAGGCTTGGCATCTGAGGGTGACTGGTATTATGAAAGATGCTACAGCTTGAGTGTCAATCCCTTAAAGCAGGTTTTGGAACAAAGGCCTCATCTCTGCATACTAGCCGAGTTTCCATCCGAAGGAAGTTTTGCCGACAGTGATCAAATGTTCGACAGTGAGCCATATAGCGATATCAGTCTGCCATCACAGATGAGCACTCATACGTCCGATGGTTCAATGTTTGTGAGTTTTTCTGAGAGTAGCTACAATAGTGATCATGGTAGTGGCAACGAGGATGCTCTGGATGCTAGTTATGTACTTTATGAGGAAAGCTCAGATGAGGTAGAGACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

412

Amino Acids

45.34

Weight (kDa)

5.49

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AasI GACNNNNNNGTC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 961
AccI GTMKAC 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 2 cut(s) 437, 824
AclWI GGATC 5 cut(s) 62, 75, 223, 282, 318
AcuI CTGAAG 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 425
AfaI GTAC 1 cut(s) 1200
AfiI CCNNNNNNNGG 4 cut(s) 297, 344, 481, 1022
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 7 cut(s) 45, 401, 548, 580, 717, 868, 1119
AjnI CCWGG 2 cut(s) 193, 361
AluBI AGCT 8 cut(s) 35, 161, 178, 601, 871, 948, 1146, 1215
AluI AGCT 8 cut(s) 35, 161, 178, 601, 871, 948, 1146, 1215
Alw21I GWGCWC 2 cut(s) 361, 1100
Alw26I GTCTC 2 cut(s) 174, 1223
AlwI GGATC 5 cut(s) 62, 75, 223, 282, 318
AlwNI CAGNNNCTG 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 4 cut(s) 196, 438, 472, 986
ApeKI GCWGC 2 cut(s) 29, 32
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 137, 576, 932
BamHI GGATCC 1 cut(s) 67
BanII GRGCYC 2 cut(s) 338, 370
Bbv12I GWGCWC 2 cut(s) 361, 1100
BbvI GCAGC 2 cut(s) 16, 44
BccI CCATC 4 cut(s) 454, 1024, 1093, 1106
BciT130I CCWGG 2 cut(s) 195, 363
BclI TGATCA 2 cut(s) 1042, 1156
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 174, 1223
BfaI CTAG 4 cut(s) 230, 341, 1004, 1191
BfmI CTRYAG 3 cut(s) 30, 252, 943
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 961
BisI GCNGC 3 cut(s) 30, 33, 438
BlsI GCNGC 3 cut(s) 31, 34, 439
Bme1390I CCNGG 3 cut(s) 149, 195, 363
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 69, 752
BmrFI CCNGG 3 cut(s) 149, 195, 363
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 6 cut(s) 425, 820, 920, 929, 1168, 1177
BmuI ACTGGG 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 1199, 1231
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 970
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 63, 362, 754
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 344, 481, 1022
Bse1I ACTGG 3 cut(s) 166, 739, 929
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 2 cut(s) 195, 363
BseCI ATCGAT 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 63, 362, 754
BseGI GGATG 3 cut(s) 1016, 1183, 1192
BseLI CCNNNNNNNGG 4 cut(s) 297, 344, 481, 1022
BseMII CTCAG 6 cut(s) 479, 652, 737, 906, 1128, 1230
BseNI ACTGG 3 cut(s) 166, 739, 929
BseXI GCAGC 2 cut(s) 16, 44
BshFI GGCC 4 cut(s) 198, 440, 474, 988
BshVI ATCGAT 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 361, 1100
BsiSI CCGG 2 cut(s) 148, 244
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 4 cut(s) 297, 344, 481, 1022
BsmAI GTCTC 2 cut(s) 174, 1223
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 850
BsnI GGCC 4 cut(s) 198, 440, 474, 988
Bsp1286I GDGCHC 4 cut(s) 338, 361, 370, 1100
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 437, 824
BspANI GGCC 4 cut(s) 198, 440, 474, 988
BspCNI CTCAG 6 cut(s) 480, 651, 738, 907, 1129, 1229
BspDI ATCGAT 1 cut(s) 311
BspEI TCCGGA 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 69, 752
BspMAI CTGCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 961
BspPI GGATC 5 cut(s) 62, 75, 223, 282, 318
BspTI CTTAAG 1 cut(s) 173
BsrI ACTGG 3 cut(s) 166, 739, 929
BssECI CCNNGG 3 cut(s) 63, 362, 754
BssMI GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
BssNAI GTATAC 1 cut(s) 674
BssT1I CCWWGG 2 cut(s) 63, 754
Bst1107I GTATAC 1 cut(s) 674
Bst2UI CCWGG 2 cut(s) 195, 363
Bst4CI ACNGT 6 cut(s) 103, 353, 521, 575, 1040, 1058
BstAFI CTTAAG 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 592, 809
BstDEI CTNAG 7 cut(s) 488, 638, 746, 875, 915, 1137, 1216
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 1016, 1183, 1192
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 8 cut(s) 70, 218, 290, 326, 460, 835, 1045, 1159
BstMAI GTCTC 2 cut(s) 174, 1223
BstMBI GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
BstMWI GCNNNNNNNGC 4 cut(s) 158, 365, 437, 1187
BstNI CCWGG 2 cut(s) 195, 363
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 3 cut(s) 147, 193, 361
BstSFI CTRYAG 3 cut(s) 30, 252, 943
BstV1I GCAGC 2 cut(s) 16, 44
BstX2I RGATCY 4 cut(s) 67, 215, 287, 323
BstYI RGATCY 4 cut(s) 67, 215, 287, 323
BstZ17I GTATAC 1 cut(s) 674
Bsu15I ATCGAT 1 cut(s) 311
BsuRI GGCC 4 cut(s) 198, 440, 474, 988
BsuTUI ATCGAT 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 1016, 1183, 1192
BtsIMutI CAGTG 5 cut(s) 358, 513, 732, 1045, 1063
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 2 cut(s) 592, 809
CaiI CAGNNNCTG 1 cut(s) 327
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 311
Csp6I GTAC 1 cut(s) 1199
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 7 cut(s) 64, 273, 479, 620, 656, 808, 1160
CviQI GTAC 1 cut(s) 1199
DdeI CTNAG 7 cut(s) 488, 638, 746, 875, 915, 1137, 1216
DpnI GATC 8 cut(s) 69, 217, 289, 325, 459, 834, 1044, 1158
DpnII GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
DraI TTTAAA 1 cut(s) 649
DraIII CACNNNGTG 1 cut(s) 425
DrdI GACNNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 502
EciI GGCGGA 1 cut(s) 839
Eco130I CCWWGG 2 cut(s) 63, 754
Eco147I AGGCCT 1 cut(s) 988
Eco24I GRGCYC 2 cut(s) 338, 370
Eco32I GATATC 1 cut(s) 1075
Eco57I CTGAAG 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 193, 361
EcoRV GATATC 1 cut(s) 1075
EcoT14I CCWWGG 2 cut(s) 63, 754
EcoT22I ATGCAT 2 cut(s) 418, 813
EcoT38I GRGCYC 2 cut(s) 338, 370
ErhI CCWWGG 2 cut(s) 63, 754
FaeI CATG 7 cut(s) 67, 276, 482, 623, 659, 811, 1163
FaqI GGGAC 1 cut(s) 362
FatI CATG 7 cut(s) 63, 272, 478, 619, 655, 807, 1159
FbaI TGATCA 2 cut(s) 1042, 1156
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 30, 33, 438
FokI GGATG 3 cut(s) 1003, 1190, 1199
FriOI GRGCYC 2 cut(s) 338, 370
Fsp4HI GCNGC 3 cut(s) 30, 33, 438
FspBI CTAG 4 cut(s) 230, 341, 1004, 1191
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 30, 33, 438
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 4 cut(s) 198, 440, 474, 988
HapII CCGG 2 cut(s) 148, 244
HhaI GCGC 1 cut(s) 515
Hin1II CATG 7 cut(s) 67, 276, 482, 623, 659, 811, 1163
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 2 cut(s) 118, 709
HindII GTYRAC 2 cut(s) 118, 709
HindIII AAGCTT 2 cut(s) 159, 176
HinfI GANTC 4 cut(s) 142, 305, 313, 548
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 2 cut(s) 148, 244
HphI GGTGA 3 cut(s) 137, 576, 932
Hpy166II GTNNAC 3 cut(s) 118, 674, 709
Hpy188I TCNGA 8 cut(s) 641, 747, 816, 916, 1021, 1111, 1138, 1219
Hpy188III TCNNGA 6 cut(s) 244, 291, 321, 461, 884, 1184
Hpy8I GTNNAC 3 cut(s) 118, 674, 709
HpyAV CCTTC 5 cut(s) 81, 295, 485, 896, 1016
HpyCH4III ACNGT 6 cut(s) 103, 353, 521, 575, 1040, 1058
HpyCH4IV ACGT 2 cut(s) 206, 1106
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 365, 437, 1187
HpyF3I CTNAG 7 cut(s) 488, 638, 746, 875, 915, 1137, 1216
HpySE526I ACGT 2 cut(s) 206, 1106
Hsp92II CATG 7 cut(s) 67, 276, 482, 623, 659, 811, 1163
HspAI GCGC 1 cut(s) 513
Kpn2I TCCGGA 1 cut(s) 243
Ksp22I TGATCA 2 cut(s) 1042, 1156
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
LmnI GCTCC 2 cut(s) 364, 876
Lsp1109I GCAGC 2 cut(s) 16, 44
LweI GCATC 6 cut(s) 425, 820, 920, 929, 1168, 1177
MaeI CTAG 4 cut(s) 230, 341, 1004, 1191
MaeII ACGT 2 cut(s) 206, 1106
MaeIII GTNAC 4 cut(s) 207, 521, 622, 920
MalI GATC 8 cut(s) 69, 217, 289, 325, 459, 834, 1044, 1158
MboI GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
MflI RGATCY 4 cut(s) 67, 215, 287, 323
MhlI GDGCHC 4 cut(s) 338, 361, 370, 1100
MluCI AATT 4 cut(s) 380, 465, 528, 610
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 762
Mph1103I ATGCAT 2 cut(s) 418, 813
MroI TCCGGA 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 7 cut(s) 51, 117, 174, 527, 648, 681, 965
MslI CAYNNNNRTG 1 cut(s) 1164
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 148, 244
MspR9I CCNGG 3 cut(s) 149, 195, 363
Mva1269I GAATGC 1 cut(s) 850
MvaI CCWGG 2 cut(s) 195, 363
MwoI GCNNNNNNNGC 4 cut(s) 158, 365, 437, 1187
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 63
NdeII GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
NlaIII CATG 7 cut(s) 67, 276, 482, 623, 659, 811, 1163
NlaIV GGNNCC 2 cut(s) 69, 752
NmeAIII GCCGAG 1 cut(s) 1033
NmuCI GTSAC 3 cut(s) 207, 521, 920
NsiI ATGCAT 2 cut(s) 418, 813
NspI RCATGY 1 cut(s) 811
PaeI GCATGC 1 cut(s) 811
PceI AGGCCT 1 cut(s) 988
PctI GAATGC 1 cut(s) 850
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 142, 313, 548
PkrI GCNGC 3 cut(s) 31, 34, 439
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 2 cut(s) 193, 361
PspGI CCWGG 2 cut(s) 193, 361
PspN4I GGNNCC 2 cut(s) 69, 752
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 327
PsuI RGATCY 4 cut(s) 67, 215, 287, 323
RsaI GTAC 1 cut(s) 1200
RsaNI GTAC 1 cut(s) 1199
RseI CAYNNNNRTG 1 cut(s) 1164
SaqAI TTAA 7 cut(s) 51, 117, 174, 527, 648, 681, 965
SatI GCNGC 3 cut(s) 30, 33, 438
Sau3AI GATC 8 cut(s) 67, 215, 287, 323, 457, 832, 1042, 1156
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 149, 195, 363
SduI GDGCHC 4 cut(s) 338, 361, 370, 1100
SfaNI GCATC 6 cut(s) 425, 820, 920, 929, 1168, 1177
SfcI CTRYAG 3 cut(s) 30, 252, 943
SmiMI CAYNNNNRTG 1 cut(s) 1164
SmlI CTYRAG 2 cut(s) 173, 949
SmoI CTYRAG 2 cut(s) 173, 949
SphI GCATGC 1 cut(s) 811
Sse9I AATT 4 cut(s) 380, 465, 528, 610
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 2 cut(s) 437, 824
SspI AATATT 2 cut(s) 88, 397
SspMI CTAG 4 cut(s) 230, 341, 1004, 1191
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 3 cut(s) 147, 193, 361
StyI CCWWGG 2 cut(s) 63, 754
TaaI ACNGT 6 cut(s) 103, 353, 521, 575, 1040, 1058
TaiI ACGT 2 cut(s) 209, 1109
TaqI TCGA 3 cut(s) 6, 311, 1053
TasI AATT 4 cut(s) 380, 465, 528, 610
TatI WGTACW 1 cut(s) 1198
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 3 cut(s) 142, 313, 548
Tru1I TTAA 7 cut(s) 51, 117, 174, 527, 648, 681, 965
Tru9I TTAA 7 cut(s) 51, 117, 174, 527, 648, 681, 965
TscAI CASTG 5 cut(s) 358, 513, 739, 1045, 1063
TseFI GTSAC 3 cut(s) 207, 521, 920
TseI GCWGC 2 cut(s) 29, 32
Tsp45I GTSAC 3 cut(s) 207, 521, 920
TspDTI ATGAA 4 cut(s) 261, 467, 618, 948
TspRI CASTG 5 cut(s) 358, 513, 739, 1045, 1063
Vha464I CTTAAG 1 cut(s) 173
XceI RCATGY 1 cut(s) 811
XmiI GTMKAC 1 cut(s) 673
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 4 cut(s) 230, 341, 1004, 1191
Zsp2I ATGCAT 2 cut(s) 418, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.