Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Reverse (-)

1394845 .. 1395588

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03153.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTGAGACATCAAAATGGTGGTGGATTGGTGCAAATCACAACACATCAAATTCCTCGCCTTGGCTTAACTCTACTCTCTCTGAGCTTGATTCAAAGACAAAGGAAATGCTGAGCGTGATTGATGAGGTTGAAGATGAAGGAGATTCCTTGATGAAACGAGCAAAGATTAATTACGAGAATAAGCCAAAGCTCATTGAATTGCTCGAGGAATTATACCGTTCACATCGCTCTTTGGCGCAGAAGCATGATCTCTTGATCAAAACCTCTTCTCTGAATTCGGACAGCCATAACTCATCATCATGCGACGAGATCCGATCGGAAGTGTGTGAAGAAACAGAGTCGTCTGATGTTGAAGCTGAAACTGAAAAAGACCAAATTGTTGAATTTGACGATGGTGATGAGACAATGAAGGAAGAGTTGGAGATACTTAGAGAAGAAAACAGAGTTTACAAGGAGAAGAAAGAAGTAGTGACTCGGTTGCTTGCAAATTTAGTTAGGGTTTGCTTTTGCTTCCAATTCAATTGGGAAATATTTTCTTATCACCTTTTGCGTTTTTGTTTACTATTTTCTCATGATCCTATTGGAGGTTGGGTGATATGTACTAAAAGATTTCGTTACTATTTTCTCATAATGTTTTCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

215

Amino Acids

25.36

Weight (kDa)

4.87

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	7 - 84	2e-26	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	307, 572
AcsI	RAATTY	4 cut(s)	52, 277, 386, 490
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	63, 587
AgsI	TTSAA	6 cut(s)	96, 134, 200, 356, 386, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	3 cut(s)	88, 193, 359
AluI	AGCT	3 cut(s)	88, 193, 359
Alw26I	GTCTC	2 cut(s)	2, 398
AlwI	GGATC	2 cut(s)	307, 572
Ama87I	CYCGRG	1 cut(s)	206
ApoI	RAATTY	4 cut(s)	52, 277, 386, 490
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	4 cut(s)	17, 410, 536, 607
AvaI	CYCGRG	1 cut(s)	206
BccI	CCATC	1 cut(s)	389
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	2, 398
BlpI	GCTNAGC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 587
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	63, 587
BseMII	CTCAG	2 cut(s)	75, 104
Bsh1285I	CGRYCG	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	63, 587
BsmAI	GTCTC	2 cut(s)	2, 398
BsoBI	CYCGRG	1 cut(s)	206
Bsp143I	GATC	5 cut(s)	250, 258, 312, 317, 577
Bsp1720I	GCTNAGC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	76, 105
BspHI	TCATGA	1 cut(s)	574
BspPI	GGATC	2 cut(s)	307, 572
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	5 cut(s)	250, 258, 312, 317, 577
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	2 cut(s)	274, 411
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	3 cut(s)	84, 113, 431
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	5 cut(s)	253, 261, 315, 320, 580
BstMAI	GTCTC	2 cut(s)	2, 398
BstMBI	GATC	5 cut(s)	250, 258, 312, 317, 577
BstMCI	CGRYCG	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	486
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	3 cut(s)	248, 303, 575
CviJI	RGCY	6 cut(s)	67, 88, 187, 193, 288, 359
CviKI_1	RGCY	6 cut(s)	67, 88, 187, 193, 288, 359
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	3 cut(s)	84, 113, 431
DpnI	GATC	5 cut(s)	252, 260, 314, 319, 579
DpnII	GATC	5 cut(s)	250, 258, 312, 317, 577
Eam1104I	CTCTTC	2 cut(s)	274, 411
EarI	CTCTTC	2 cut(s)	274, 411
Eco130I	CCWWGG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	206
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	251, 306, 578
FaiI	YATR	7 cut(s)	217, 249, 291, 304, 576, 601, 632
FatI	CATG	3 cut(s)	247, 302, 574
FbaI	TGATCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	251, 306, 578
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	4 cut(s)	92, 146, 341, 475
HphI	GGTGA	4 cut(s)	17, 410, 536, 607
Hpy166II	GTNNAC	3 cut(s)	224, 451, 563
Hpy188I	TCNGA	6 cut(s)	85, 276, 283, 317, 322, 349
Hpy188III	TCNNGA	2 cut(s)	256, 575
Hpy8I	GTNNAC	3 cut(s)	224, 451, 563
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	134, 406
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	35, 488
HpyF3I	CTNAG	3 cut(s)	84, 113, 431
Hsp92II	CATG	3 cut(s)	251, 306, 578
HspAI	GCGC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	5 cut(s)	250, 258, 312, 317, 577
MaeIII	GTNAC	2 cut(s)	472, 617
MalI	GATC	5 cut(s)	252, 260, 314, 319, 579
MboI	GATC	5 cut(s)	250, 258, 312, 317, 577
MboII	GAAGA	6 cut(s)	146, 261, 344, 428, 449, 472
MfeI	CAATTG	1 cut(s)	523
MflI	RGATCY	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	350, 469
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	67, 121, 202, 277, 581
MseI	TTAA	2 cut(s)	69, 171
MslI	CAYNNNNRTG	2 cut(s)	16, 301
MunI	CAATTG	1 cut(s)	523
NdeII	GATC	5 cut(s)	250, 258, 312, 317, 577
NlaIII	CATG	3 cut(s)	251, 306, 578
NmuCI	GTSAC	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	92, 146
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	2 cut(s)	349, 469
PpsI	GAGTC	2 cut(s)	349, 469
PshBI	ATTAAT	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	312
PvuI	CGATCG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	2 cut(s)	16, 301
SaqAI	TTAA	2 cut(s)	69, 171
Sau3AI	GATC	5 cut(s)	250, 258, 312, 317, 577
SchI	GAGTC	2 cut(s)	350, 469
SetI	ASST	7 cut(s)	90, 132, 195, 269, 361, 549, 592
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	2 cut(s)	16, 301
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SspI	AATATT	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	207
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	2 cut(s)	92, 146
Tru1I	TTAA	2 cut(s)	69, 171
Tru9I	TTAA	2 cut(s)	69, 171
TseFI	GTSAC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	3 cut(s)	153, 170, 425
VspI	ATTAAT	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	4 cut(s)	52, 277, 386, 490
XhoI	CTCGAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.