Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Reverse (-)

41517668 .. 41518450

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1298400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGACAGTTGAGTTCAGCTGTGGATTCGCTCAAAGAGTATTCCGATTCTGAAGTTGATGATCCTGAACCAGAGGATGAACCCCGAGTTGATGAGGAAACAAAAGAGAACGCATTGAGCATGTTTAGCGAAGACGAGGTTAGGAAATTGAGGGAAGCAATAGCAAGGCTCGAGGAAGAGAACAGAACTCAGAAGGATGAACTGAAGCAGAAAGATGAAGAGAAGAGAGAGGTCATAAGACAGCTGAGTTTAGCTGTGGATTGGCTCAAAGAGGAGAATGTGGAGCTGAGAAAGAAGTGTTTCGCCAGAGAATCGCCAAATACTTCGAGTCCTGCCGGAGAACCACCGAATAATTCGAGTCCTTTCGAGTTCAACAGGTTCACCGGGACATTTTTGAGGAAGCTGTTTAACAGGTCTCCAAGGTCTCATGGAACAATTGTTGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

150

Amino Acids

17.3

Weight (kDa)

4.86

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	72, 224
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	5 cut(s)	20, 244, 254, 286, 403
AluI	AGCT	5 cut(s)	20, 244, 254, 286, 403
Alw26I	GTCTC	2 cut(s)	420, 429
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	2 cut(s)	84, 170
Asp700I	GAANNNNTTC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	84, 170
BbsI	GAAGAC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	420, 429
BfaI	CTAG	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	385
BmeT110I	CYCGRG	2 cut(s)	84, 170
BmrFI	CCNGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	385
BsaI	GGTCTC	2 cut(s)	420, 429
BsaJI	CCNNGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	82, 202
BseMII	CTCAG	3 cut(s)	203, 236, 278
BseRI	GAGGAG	1 cut(s)	287
BsiHKCI	CYCGRG	2 cut(s)	84, 170
BsiSI	CCGG	2 cut(s)	336, 384
BslFI	GGGAC	1 cut(s)	400
BsmAI	GTCTC	2 cut(s)	420, 429
BsmFI	GGGAC	1 cut(s)	400
Bso31I	GGTCTC	2 cut(s)	420, 429
BsoBI	CYCGRG	2 cut(s)	84, 170
Bsp143I	GATC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	202, 237, 279
BspPI	GGATC	1 cut(s)	56
BspTNI	GGTCTC	2 cut(s)	420, 429
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	3 cut(s)	171, 213, 218
BstDEI	CTNAG	3 cut(s)	189, 245, 287
BstF5I	GGATG	2 cut(s)	82, 202
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	420, 429
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	82, 202
CviAII	CATG	2 cut(s)	121, 428
CviJI	RGCY	7 cut(s)	20, 169, 244, 254, 265, 286, 403
CviKI_1	RGCY	7 cut(s)	20, 169, 244, 254, 265, 286, 403
DdeI	CTNAG	3 cut(s)	189, 245, 287
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	171, 213, 218
EarI	CTCTTC	3 cut(s)	171, 213, 218
Eco130I	CCWWGG	1 cut(s)	419
Eco31I	GGTCTC	2 cut(s)	420, 429
Eco57I	CTGAAG	2 cut(s)	72, 224
Eco88I	CYCGRG	2 cut(s)	84, 170
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	124, 431
FaiI	YATR	3 cut(s)	122, 236, 429
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	120, 427
FokI	GGATG	2 cut(s)	89, 209
FspBI	CTAG	1 cut(s)	448
HapII	CCGG	2 cut(s)	336, 384
Hin1II	CATG	2 cut(s)	124, 431
HinfI	GANTC	5 cut(s)	26, 47, 311, 328, 358
HpaII	CCGG	2 cut(s)	336, 384
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	3 cut(s)	46, 52, 192
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	189, 245, 287
Hsp92II	CATG	2 cut(s)	124, 431
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	78, 84, 319, 345, 349, 361, 397, 397
MaeI	CTAG	1 cut(s)	448
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	4 cut(s)	143, 188, 230, 235
MfeI	CAATTG	1 cut(s)	435
MluCI	AATT	3 cut(s)	146, 352, 435
MlyI	GAGTC	2 cut(s)	337, 367
MnlI	CCTC	8 cut(s)	67, 88, 130, 144, 166, 223, 265, 390
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	20, 244
MspI	CCGG	2 cut(s)	336, 384
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	124, 431
NspI	RCATGY	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	26, 47, 311
PleI	GAGTC	2 cut(s)	336, 366
PpsI	GAGTC	2 cut(s)	336, 366
PspXI	VCTCGAGB	1 cut(s)	170
PvuII	CAGCTG	2 cut(s)	20, 244
SaqAI	TTAA	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	337, 367
ScrFI	CCNGG	1 cut(s)	385
Sfr274I	CTCGAG	1 cut(s)	170
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	146, 352, 435
SspMI	CTAG	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	171, 326, 356, 366
TasI	AATT	3 cut(s)	146, 352, 435
TfiI	GAWTC	3 cut(s)	26, 47, 311
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TspDTI	ATGAA	3 cut(s)	93, 213, 231
XceI	RCATGY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.