Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Reverse (-)

22202885 .. 22203552

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTAAAGCTGATTCAGGAAGAACCAGATTCATTTGCTCAATGTGCAGAGATGTATTACAAAAAGCGGCCGAAGCTGCTCAGCATTGTGGAAGAATTCTATCGCATTCACCGTTCATTGGCTGAGCGGTATGATCAAGAGTATTCCGAGTCTGAAGTTGATGATCGATCATCGACTGAACCGGAGGATGAACCCCGAGTTGATGAAGAAACAAAAGAGAATGCATTGAGCAGGGTTAGCGAAGACGAGGTGAGGAAATTGAGGGAAACGATAGCGAGGCTCGAGGAAGACCGCAGAACTCAGAAGGATGAACTGCAGCAGAAAGATGAAGTGAAGAGAGAGGTCATAAGACAGTTGAGTTTAAAGTGTTTTGCCAGAGAATCGCCGAATAATTCGAGTCCCTTCGCGCTCAACAAATTCACCGGGACATTTTTGAGGAATTTGTTTAACAGGTCTCCAAAGTCTCATGGAAAAATTGTTGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

163

Amino Acids

19.2

Weight (kDa)

5.46

Isoelectric Point (pI)

70.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	407
AciI	CCGC	3 cut(s)	67, 127, 292
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	3 cut(s)	95, 416, 439
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	118
AluBI	AGCT	2 cut(s)	10, 76
AluI	AGCT	2 cut(s)	10, 76
Alw26I	GTCTC	2 cut(s)	459, 468
Ama87I	CYCGRG	2 cut(s)	195, 281
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	76, 316
ApoI	RAATTY	3 cut(s)	95, 416, 439
AspLEI	GCGC	1 cut(s)	409
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	101, 262, 412
AvaI	CYCGRG	2 cut(s)	195, 281
BbsI	GAAGAC	2 cut(s)	249, 294
BbvI	GCAGC	2 cut(s)	63, 328
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	459, 468
BfaI	CTAG	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	68, 77, 317
BlpI	GCTNAGC	2 cut(s)	80, 123
BlsI	GCNGC	3 cut(s)	69, 78, 318
Bme1390I	CCNGG	1 cut(s)	424
BmeT110I	CYCGRG	2 cut(s)	195, 281
BmrFI	CCNGG	1 cut(s)	424
BpiI	GAAGAC	2 cut(s)	249, 294
Bpu1102I	GCTNAGC	2 cut(s)	80, 123
BpuMI	CCSGG	1 cut(s)	424
Bsa29I	ATCGAT	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	166
BseGI	GGATG	2 cut(s)	193, 313
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	94, 114, 314
BseX3I	CGGCCG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	63, 328
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	71
BsiHKCI	CYCGRG	2 cut(s)	195, 281
BsiSI	CCGG	2 cut(s)	182, 423
BslFI	GGGAC	2 cut(s)	384, 439
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	459, 468
BsmFI	GGGAC	2 cut(s)	384, 439
BsmI	GAATGC	2 cut(s)	105, 226
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	459
BsoBI	CYCGRG	2 cut(s)	195, 281
Bsp143I	GATC	3 cut(s)	133, 163, 167
Bsp1720I	GCTNAGC	2 cut(s)	80, 123
BspACI	CCGC	3 cut(s)	67, 127, 292
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	3 cut(s)	93, 115, 313
BspDI	ATCGAT	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	127
BssMI	GATC	3 cut(s)	133, 163, 167
Bst4CI	ACNGT	2 cut(s)	113, 354
Bst6I	CTCTTC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	80, 123, 300
BstF5I	GGATG	2 cut(s)	193, 313
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	136, 166, 170
BstMAI	GTCTC	2 cut(s)	459, 468
BstMBI	GATC	3 cut(s)	133, 163, 167
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 73, 76, 237
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	63, 328
BstV2I	GAAGAC	2 cut(s)	249, 294
BstZI	CGGCCG	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	70
BsuTUI	ATCGAT	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	193, 313
CfoI	GCGC	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	166
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	5 cut(s)	10, 70, 76, 122, 280
CviKI_1	RGCY	5 cut(s)	10, 70, 76, 122, 280
DdeI	CTNAG	3 cut(s)	80, 123, 300
DpnI	GATC	3 cut(s)	135, 165, 169
DpnII	GATC	3 cut(s)	133, 163, 167
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	68
EagI	CGGCCG	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EclXI	CGGCCG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	459
Eco52I	CGGCCG	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	195, 281
EcoRI	GAATTC	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	1 cut(s)	470
FaiI	YATR	3 cut(s)	132, 347, 468
FaqI	GGGAC	2 cut(s)	384, 439
FatI	CATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	68, 77, 317
FokI	GGATG	2 cut(s)	200, 320
Fsp4HI	GCNGC	3 cut(s)	68, 77, 317
FspBI	CTAG	1 cut(s)	487
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	3 cut(s)	68, 77, 317
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	182, 423
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	5 cut(s)	13, 29, 149, 380, 397
HpaII	CCGG	2 cut(s)	182, 423
HphI	GGTGA	3 cut(s)	101, 262, 412
Hpy188I	TCNGA	3 cut(s)	148, 154, 303
Hpy188III	TCNNGA	2 cut(s)	17, 137
HpyAV	CCTTC	2 cut(s)	298, 412
HpyCH4III	ACNGT	2 cut(s)	113, 354
HpyCH4V	TGCA	4 cut(s)	47, 224, 316, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 73, 76, 237
HpyF3I	CTNAG	3 cut(s)	80, 123, 300
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 163, 167
LpnPI	CCDG	7 cut(s)	2, 39, 195, 217, 388, 436, 436
Lsp1109I	GCAGC	2 cut(s)	63, 328
MaeI	CTAG	1 cut(s)	487
MalI	GATC	3 cut(s)	135, 165, 169
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	3 cut(s)	133, 163, 167
MboII	GAAGA	6 cut(s)	32, 104, 218, 254, 299, 346
MluCI	AATT	6 cut(s)	95, 257, 391, 416, 439, 474
MlyI	GAGTC	2 cut(s)	158, 406
MnlI	CCTC	8 cut(s)	178, 241, 246, 255, 270, 277, 334, 429
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	2 cut(s)	362, 447
MspI	CCGG	2 cut(s)	182, 423
MspR9I	CCNGG	1 cut(s)	424
Mva1269I	GAATGC	2 cut(s)	105, 226
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	4 cut(s)	44, 73, 76, 237
NciI	CCSGG	1 cut(s)	424
NdeII	GATC	3 cut(s)	133, 163, 167
NlaIII	CATG	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	105, 226
PfeI	GAWTC	3 cut(s)	13, 29, 380
PkrI	GCNGC	3 cut(s)	69, 78, 318
PleI	GAGTC	2 cut(s)	157, 405
PpsI	GAGTC	2 cut(s)	157, 405
PspXI	VCTCGAGB	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	362, 447
SatI	GCNGC	3 cut(s)	68, 77, 317
Sau3AI	GATC	3 cut(s)	133, 163, 167
SchI	GAGTC	2 cut(s)	158, 406
ScrFI	CCNGG	1 cut(s)	424
SetI	ASST	5 cut(s)	12, 78, 252, 345, 455
SfcI	CTRYAG	1 cut(s)	314
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	6 cut(s)	95, 257, 391, 416, 439, 474
SsiI	CCGC	3 cut(s)	67, 127, 292
SspMI	CTAG	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	113, 354
TaqI	TCGA	4 cut(s)	166, 173, 282, 395
TasI	AATT	6 cut(s)	95, 257, 391, 416, 439, 474
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	13, 29, 380
Tru1I	TTAA	2 cut(s)	362, 447
Tru9I	TTAA	2 cut(s)	362, 447
TseI	GCWGC	2 cut(s)	76, 316
TspDTI	ATGAA	6 cut(s)	21, 105, 204, 219, 324, 342
XapI	RAATTY	3 cut(s)	95, 416, 439
XhoI	CTCGAG	1 cut(s)	281
XspI	CTAG	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.