Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000515.1

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Reverse (-)

31897 .. 35275

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000515.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgaataggcagcagcaggcgtcgcactactggttgtttgacagtcgcagcaactcgaggcggtcaccatggcttcaatcgactctggctgagctagaaaagaatacggaggccatgctaaagctgattcaggaagatgcagattcctttgcccaacgtgcagagatgtattacaagaagagaccacagctaatcggcatggttgaagaattctatcgagctcacaggtcattagctgagagatatgatctagttaagtctgattcgggaacgcgcctcctgacaacattagggtctccattttcaaccaaatgccattcggagaagtcgatgagtgtggtggatgaaacctacgacagcctctccgaaacctgtgaacctgaggagtacaccgagtctgaagttgatgatcccgacctagaggatgaaacaccagttgataaagtaacagaagagaaggtttcatgtggggttagtgatgatgaagtgagaaagttaagggaagaaatagagaggcttcaggaagagagtagaattcaaaaggatcaactaaagcagaaagatgatgagaagagagaggtaataagacagttgagtatggctgtggatgtttacaaacaggagaatgtgaagctgaagaagtatcttgcccgagaatcagcagataattcgagtcccttctttgagtttaacaaattaaagggagacccggatggtgaaaaacccaattctggttcaggagcagcaacagtagcttcagggtttggtgggcttgggcttgatggaattgtgggcagtgatgactcacttggagaaattggcacaccagaaggtgaaggaaacaagggagaaatatctggggataaggttggagaggaagatagtggggctggagcatctggtaaagctgcaggtgctgcagagattgaggaaatcttagtagctagtgaagaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

319

Amino Acids

35.44

Weight (kDa)

4.56

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	902
AccII	CGCG	1 cut(s)	274
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	404, 552
AcsI	RAATTY	2 cut(s)	209, 534
AcuI	CTGAAG	4 cut(s)	420, 503, 656, 741
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	731
AgsI	TTSAA	4 cut(s)	77, 206, 306, 539
AluBI	AGCT	9 cut(s)	94, 124, 190, 221, 236, 634, 755, 908, 944
AluI	AGCT	9 cut(s)	94, 124, 190, 221, 236, 634, 755, 908, 944
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	3 cut(s)	175, 300, 699
AlwI	GGATC	2 cut(s)	404, 552
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	2 cut(s)	55, 651
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	6 cut(s)	10, 13, 48, 743, 908, 917
ApoI	RAATTY	2 cut(s)	209, 534
AspLEI	GCGC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	3 cut(s)	57, 728, 845
AvaI	CYCGRG	2 cut(s)	55, 651
AxyI	CCTNAGG	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	6 cut(s)	22, 25, 60, 755, 895, 904
BccI	CCATC	2 cut(s)	707, 776
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	3 cut(s)	175, 300, 699
BfaI	CTAG	4 cut(s)	95, 251, 419, 945
BfmI	CTRYAG	2 cut(s)	909, 918
BfuAI	ACCTGC	1 cut(s)	902
BisI	GCNGC	6 cut(s)	11, 14, 49, 744, 909, 918
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	6 cut(s)	12, 15, 50, 745, 910, 919
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	2 cut(s)	55, 651
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	2 cut(s)	127, 905
BpmI	CTGGAG	1 cut(s)	912
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	3 cut(s)	175, 300, 699
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	35, 434
Bse21I	CCTNAGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	4 cut(s)	349, 430, 613, 718
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	3 cut(s)	81, 228, 372
BseNI	ACTGG	2 cut(s)	35, 434
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	6 cut(s)	22, 25, 60, 755, 895, 904
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	2 cut(s)	55, 651
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	3 cut(s)	175, 300, 699
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	3 cut(s)	175, 300, 699
BsoBI	CYCGRG	2 cut(s)	55, 651
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	247, 409, 544
Bsp1720I	GCTNAGC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	3 cut(s)	82, 229, 373
BspFNI	CGCG	1 cut(s)	274
BspMAI	CTGCAG	2 cut(s)	913, 922
BspMI	ACCTGC	1 cut(s)	902
BspPI	GGATC	2 cut(s)	404, 552
BspTNI	GGTCTC	3 cut(s)	175, 300, 699
BsrI	ACTGG	2 cut(s)	35, 434
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	247, 409, 544
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	44, 591, 751
Bst6I	CTCTTC	4 cut(s)	173, 447, 519, 566
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	90, 237, 381, 937
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	63
BstF5I	GGATG	4 cut(s)	349, 430, 613, 718
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	3 cut(s)	250, 412, 547
BstMAI	GTCTC	3 cut(s)	175, 300, 699
BstMBI	GATC	3 cut(s)	247, 409, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 158, 752, 914, 917
BstPI	GGTNACC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	2 cut(s)	909, 918
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	6 cut(s)	22, 25, 60, 755, 895, 904
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	349, 430, 613, 718
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	1 cut(s)	802
BveI	ACCTGC	1 cut(s)	902
Cac8I	GCNNGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	917
CfoI	GCGC	1 cut(s)	276
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	69, 115, 199, 465
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	4 cut(s)	90, 237, 381, 937
DpnI	GATC	3 cut(s)	249, 411, 546
DpnII	GATC	3 cut(s)	247, 409, 544
Eam1104I	CTCTTC	4 cut(s)	173, 447, 519, 566
EarI	CTCTTC	4 cut(s)	173, 447, 519, 566
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	3 cut(s)	175, 300, 699
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	4 cut(s)	420, 503, 656, 741
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	55, 651
Eco91I	GGTNACC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	63
EcoRI	GAATTC	2 cut(s)	209, 534
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	72, 118, 202, 468
FaiI	YATR	6 cut(s)	70, 116, 200, 246, 466, 599
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	4 cut(s)	68, 114, 198, 464
Fnu4HI	GCNGC	6 cut(s)	11, 14, 49, 744, 909, 918
FokI	GGATG	4 cut(s)	356, 437, 620, 725
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	6 cut(s)	11, 14, 49, 744, 909, 918
FspBI	CTAG	4 cut(s)	95, 251, 419, 945
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	6 cut(s)	11, 14, 49, 744, 909, 918
GsuI	CTGGAG	1 cut(s)	912
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	710
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	72, 118, 202, 468
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	8 cut(s)	82, 127, 143, 263, 395, 656, 673, 803
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	3 cut(s)	57, 728, 845
Hpy166II	GTNNAC	3 cut(s)	377, 390, 613
Hpy188I	TCNGA	4 cut(s)	262, 322, 367, 400
Hpy188III	TCNNGA	6 cut(s)	131, 267, 280, 413, 521, 738
Hpy8I	GTNNAC	3 cut(s)	377, 390, 613
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	4 cut(s)	451, 688, 824, 830
HpyCH4III	ACNGT	3 cut(s)	44, 591, 751
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	140, 161, 911, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 158, 752, 914, 917
HpyF3I	CTNAG	4 cut(s)	90, 237, 381, 937
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	72, 118, 202, 468
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	247, 409, 544
LmnI	GCTCC	2 cut(s)	740, 893
Lsp1109I	GCAGC	6 cut(s)	22, 25, 60, 755, 895, 904
LweI	GCATC	2 cut(s)	127, 905
MaeI	CTAG	4 cut(s)	95, 251, 419, 945
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	63, 445
MalI	GATC	3 cut(s)	249, 411, 546
MboI	GATC	3 cut(s)	247, 409, 544
MboII	GAAGA	9 cut(s)	146, 190, 218, 464, 515, 536, 583, 649, 890
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	7 cut(s)	209, 534, 667, 695, 727, 786, 816
MlyI	GAGTC	4 cut(s)	76, 404, 682, 797
MmeI	TCCRAC	1 cut(s)	850
MseI	TTAA	4 cut(s)	255, 497, 690, 698
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	5 cut(s)	22, 158, 752, 914, 917
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	3 cut(s)	247, 409, 544
NlaIII	CATG	4 cut(s)	72, 118, 202, 468
NmuCI	GTSAC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	902
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	4 cut(s)	127, 143, 263, 656
PkrI	GCNGC	6 cut(s)	12, 15, 50, 745, 910, 919
PleI	GAGTC	4 cut(s)	76, 403, 681, 797
PpsI	GAGTC	4 cut(s)	76, 403, 681, 797
Psp124BI	GAGCTC	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	63
PspXI	VCTCGAGB	1 cut(s)	55
PstI	CTGCAG	2 cut(s)	913, 922
PstNI	CAGNNNCTG	1 cut(s)	917
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	255, 497, 690, 698
SatI	GCNGC	6 cut(s)	11, 14, 49, 744, 909, 918
Sau3AI	GATC	3 cut(s)	247, 409, 544
SchI	GAGTC	4 cut(s)	76, 404, 682, 797
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	127, 905
SfcI	CTRYAG	2 cut(s)	909, 918
Sfr274I	CTCGAG	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	7 cut(s)	209, 534, 667, 695, 727, 786, 816
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	4 cut(s)	95, 251, 419, 945
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	44, 591, 751
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	5 cut(s)	56, 80, 217, 329, 671
TasI	AATT	7 cut(s)	209, 534, 667, 695, 727, 786, 816
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	4 cut(s)	127, 143, 263, 656
Tru1I	TTAA	4 cut(s)	255, 497, 690, 698
Tru9I	TTAA	4 cut(s)	255, 497, 690, 698
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	6 cut(s)	10, 13, 48, 743, 908, 917
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	5 cut(s)	17, 360, 441, 453, 498
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	802
XapI	RAATTY	2 cut(s)	209, 534
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	4 cut(s)	95, 251, 419, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.