Rh6AG341500

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007061
Physical Location & Seq
Reverse (-)
54103158 .. 54106085
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG341500.1

Sequence Viewer

Length: 654 bp
ATGCTAAAGCTGATTCAGGAAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTATTACAAGAAGAGACCACAGCTAATCGGCATGGTTGAAGAATTCTATCGAGCTCACAGATCATTAGCTGAGAGATATGATCTAGTTAAGTCTGATTCGGGAACGCGCCTCCTGACAACATTAGGGTCTCCATTTTCAACCAAATGCCATTCGGAGAAGTCGATGAGTGTGGTGGATGAAACCTACGACAGCCTCTCCGAAACCTGTGAACCTGAGGAGTACACCGAGTCTGAAGTTGATGATCCCGACCTAGAGGATGAAACCCCAGTTGATAAAGTAACAGAAGAGAAGGTTTCATGTGGGGTTAGTGATGATGAAGTGAGAAAGTTGAGGGAAGAAATAGAGAGGCTTCAGGAAGAGAGTAGAATTCAAAAGGATCAATTAAAGCAGAAAGATGATGAGAAGAGAGAGGTAATAAGACAGTTGAGTATGGCTGTGGATGTTTACAAACAGGAGAATGTGAAGCTGAAGAAGTATCTTGCCCGAGAATCAGCAGATAATTCGAGTCCCTTCTTTGAGTTTAACAAATTAAAGGGTACATTTCTAGGGAAGTTGTTTAACAGGTCCCCACAATCTCATGCTCCCATTGTTGCACTTTAG

Protein Analysis

217

Amino Acids

25.15

Weight (kDa)

4.92

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 1 - 45 7.9e-21 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AclWI GGATC 2 cut(s) 290, 438
AcsI RAATTY 2 cut(s) 95, 420
AcuI CTGAAG 3 cut(s) 306, 389, 542
AfaI GTAC 2 cut(s) 275, 592
AgsI TTSAA 3 cut(s) 92, 192, 425
AluBI AGCT 5 cut(s) 10, 76, 107, 122, 520
AluI AGCT 5 cut(s) 10, 76, 107, 122, 520
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 61, 186
AlwI GGATC 2 cut(s) 290, 438
Ama87I CYCGRG 1 cut(s) 537
ApoI RAATTY 2 cut(s) 95, 420
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 618
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 1 cut(s) 618
AxyI CCTNAGG 1 cut(s) 267
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BcoDI GTCTC 2 cut(s) 61, 186
BfaI CTAG 3 cut(s) 137, 305, 599
Bme18I GGWCC 1 cut(s) 618
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 1 cut(s) 620
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 314
BsaI GGTCTC 2 cut(s) 61, 186
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse1I ACTGG 1 cut(s) 320
Bse21I CCTNAGG 1 cut(s) 267
BseGI GGATG 3 cut(s) 235, 316, 499
BseMII CTCAG 2 cut(s) 114, 258
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 546, 604
BsmAI GTCTC 2 cut(s) 61, 186
BsmFI GGGAC 2 cut(s) 546, 604
Bso31I GGTCTC 2 cut(s) 61, 186
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 113, 133, 295, 430
BspCNI CTCAG 2 cut(s) 115, 259
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 620
BspPI GGATC 2 cut(s) 290, 438
BspTNI GGTCTC 2 cut(s) 61, 186
BsrI ACTGG 1 cut(s) 320
BssMI GATC 4 cut(s) 113, 133, 295, 430
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 4 cut(s) 59, 333, 405, 452
BstDEI CTNAG 2 cut(s) 123, 267
BstF5I GGATG 3 cut(s) 235, 316, 499
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 116, 136, 298, 433
BstMAI GTCTC 2 cut(s) 61, 186
BstMBI GATC 4 cut(s) 113, 133, 295, 430
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstUI CGCG 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 235, 316, 499
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 618
Csp6I GTAC 2 cut(s) 274, 591
CviAII CATG 3 cut(s) 85, 351, 632
CviJI RGCY 8 cut(s) 10, 76, 107, 122, 246, 403, 488, 520
CviKI_1 RGCY 8 cut(s) 10, 76, 107, 122, 246, 403, 488, 520
CviQI GTAC 2 cut(s) 274, 591
DdeI CTNAG 2 cut(s) 123, 267
DpnI GATC 4 cut(s) 115, 135, 297, 432
DpnII GATC 4 cut(s) 113, 133, 295, 430
Eam1104I CTCTTC 4 cut(s) 59, 333, 405, 452
EarI CTCTTC 4 cut(s) 59, 333, 405, 452
Ecl136II GAGCTC 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 2 cut(s) 61, 186
Eco47I GGWCC 1 cut(s) 618
Eco53kI GAGCTC 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 306, 389, 542
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 618
EcoRI GAATTC 2 cut(s) 95, 420
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 3 cut(s) 88, 354, 635
FaiI YATR 5 cut(s) 86, 132, 352, 485, 633
FaqI GGGAC 2 cut(s) 546, 604
FatI CATG 3 cut(s) 84, 350, 631
FokI GGATG 3 cut(s) 242, 323, 506
FriOI GRGCYC 1 cut(s) 109
FspBI CTAG 3 cut(s) 137, 305, 599
GlaI GCGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 88, 354, 635
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 6 cut(s) 13, 29, 149, 281, 542, 559
Hpy166II GTNNAC 3 cut(s) 263, 276, 499
Hpy188I TCNGA 4 cut(s) 148, 208, 253, 286
Hpy188III TCNNGA 5 cut(s) 17, 153, 166, 299, 407
Hpy8I GTNNAC 3 cut(s) 263, 276, 499
HpyAV CCTTC 2 cut(s) 337, 574
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 26, 47, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 123, 267
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 88, 354, 635
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 113, 133, 295, 430
LmnI GCTCC 1 cut(s) 640
LpnPI CCDG 8 cut(s) 2, 179, 271, 279, 333, 392, 491, 601
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 137, 305, 599
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 331
MalI GATC 4 cut(s) 115, 135, 297, 432
MboI GATC 4 cut(s) 113, 133, 295, 430
MboII GAAGA 8 cut(s) 32, 76, 104, 350, 401, 422, 469, 535
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 5 cut(s) 95, 420, 434, 553, 581
MlyI GAGTC 2 cut(s) 290, 568
MnlI CCTC 7 cut(s) 173, 257, 262, 301, 378, 393, 457
MseI TTAA 5 cut(s) 141, 437, 576, 584, 612
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 4 cut(s) 113, 133, 295, 430
NlaIII CATG 3 cut(s) 88, 354, 635
NlaIV GGNNCC 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PfeI GAWTC 4 cut(s) 13, 29, 149, 542
PleI GAGTC 2 cut(s) 289, 567
PpsI GAGTC 2 cut(s) 289, 567
PpuMI RGGWCCY 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 1 cut(s) 618
PspPPI RGGWCCY 1 cut(s) 618
RsaI GTAC 2 cut(s) 275, 592
RsaNI GTAC 2 cut(s) 274, 591
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 5 cut(s) 141, 437, 576, 584, 612
Sau3AI GATC 4 cut(s) 113, 133, 295, 430
Sau96I GGNCC 1 cut(s) 618
SchI GAGTC 2 cut(s) 290, 568
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 618
Sse9I AATT 5 cut(s) 95, 420, 434, 553, 581
SspMI CTAG 3 cut(s) 137, 305, 599
SstI GAGCTC 1 cut(s) 109
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 1 cut(s) 46
TaqI TCGA 3 cut(s) 103, 215, 557
TasI AATT 5 cut(s) 95, 420, 434, 553, 581
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 4 cut(s) 13, 29, 149, 542
Tru1I TTAA 5 cut(s) 141, 437, 576, 584, 612
Tru9I TTAA 5 cut(s) 141, 437, 576, 584, 612
TspDTI ATGAA 4 cut(s) 246, 327, 339, 384
VpaK11BI GGWCC 1 cut(s) 618
XapI RAATTY 2 cut(s) 95, 420
XspI CTAG 3 cut(s) 137, 305, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.