Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Forward (+)

14557370 .. 14560643

Gene Structure 3274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAATAGGCAGCAGCAGGCGTCGCACTACTGGTTGTTTGACAGTCGCAGCAACTCGAGGCGGTCACCATGGCTTCAATCGACTCTGGCTGAGCTAGAAAAGAATACGGAGGCCATGCTAAAGCTGATTCAGGAAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTATTACAAGAAGAGACCACAGCTAATCGGCATGGTTGAAGAGTTTTATCGAGCTCACAGGTCATTAGCTGAGAGATATGATCTAGTTAAGTCTGATTCGGGAACACGCCTCCTGACAACATTAGGGTCTCCATTCTCAACCAAATGCCATTCAGAGAAGTCGATGAGTGTGGTGGACGAAACCTACGACAGCCTCTCCGAAACCTGTGAACCTGAGGAGTACACTGAGTCTGAAGTTGATGATCCCGACCTAGAGGATGAAACTTCAGTTGATAAAGTAACAGAAGAGAAGGTTTCATGTGGGGTTAGTGATGATGAAGTGAGAAAGTTAAGGGAAGAAATAGAGAGGCTTCAGGAAGAGAATAGAATTCAAAAGGATCAACTAAAGCAGAAAGATGATGAGAAGAGAGAGGTAATAAGACAGTTGAGTATGGCTGTGGATGTTTACAAACAGGAGAATGTGAAGCTGAAGAAGTATCTTGCCCAAGAATCAGCAGATAATTCGAGTCCCTTCTTCGAGTTTAACAAATTAAAGGGTACATTTCTAGGGAAGTTGTTTAACAGGTCCCCACAATCTCATGCTCCCATTGTTGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

255

Amino Acids

29.69

Weight (kDa)

5.02

Isoelectric Point (pI)

72.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	11 - 83	1.8e-32	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	404, 552
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	4 cut(s)	417, 420, 503, 656
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	389, 706
AgsI	TTSAA	3 cut(s)	77, 206, 539
AluBI	AGCT	6 cut(s)	94, 124, 190, 221, 236, 634
AluI	AGCT	6 cut(s)	94, 124, 190, 221, 236, 634
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	175, 300
AlwI	GGATC	2 cut(s)	404, 552
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	10, 13, 48
ApoI	RAATTY	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	732
AxyI	CCTNAGG	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	22, 25, 60
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BcoDI	GTCTC	2 cut(s)	175, 300
BfaI	CTAG	5 cut(s)	95, 251, 419, 713, 766
BisI	GCNGC	3 cut(s)	11, 14, 49
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	3 cut(s)	12, 15, 50
Bme18I	GGWCC	1 cut(s)	732
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	1 cut(s)	734
BmsI	GCATC	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	2 cut(s)	175, 300
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	430, 613
BseMII	CTCAG	4 cut(s)	81, 228, 372, 384
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	3 cut(s)	22, 25, 60
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	660, 718
BsmAI	GTCTC	2 cut(s)	175, 300
BsmFI	GGGAC	2 cut(s)	660, 718
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	2 cut(s)	175, 300
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	247, 409, 544
Bsp1720I	GCTNAGC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	4 cut(s)	82, 229, 373, 385
BspLI	GGNNCC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	404, 552
BspTNI	GGTCTC	2 cut(s)	175, 300
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	247, 409, 544
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	44, 591
Bst6I	CTCTTC	5 cut(s)	173, 201, 447, 519, 566
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	90, 237, 381, 393
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	430, 613
BstKTI	GATC	3 cut(s)	250, 412, 547
BstMAI	GTCTC	2 cut(s)	175, 300
BstMBI	GATC	3 cut(s)	247, 409, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 158
BstPI	GGTNACC	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	22, 25, 60
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	430, 613
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	732
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	388, 705
CviAII	CATG	5 cut(s)	69, 115, 199, 465, 746
CviQI	GTAC	2 cut(s)	388, 705
DdeI	CTNAG	4 cut(s)	90, 237, 381, 393
DpnI	GATC	3 cut(s)	249, 411, 546
DpnII	GATC	3 cut(s)	247, 409, 544
Eam1104I	CTCTTC	5 cut(s)	173, 201, 447, 519, 566
EarI	CTCTTC	5 cut(s)	173, 201, 447, 519, 566
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	2 cut(s)	175, 300
Eco47I	GGWCC	1 cut(s)	732
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	4 cut(s)	417, 420, 503, 656
Eco81I	CCTNAGG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	732
EcoO65I	GGTNACC	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	5 cut(s)	72, 118, 202, 468, 749
FaiI	YATR	7 cut(s)	70, 116, 200, 246, 466, 599, 747
FaqI	GGGAC	2 cut(s)	660, 718
FatI	CATG	5 cut(s)	68, 114, 198, 464, 745
Fnu4HI	GCNGC	3 cut(s)	11, 14, 49
FokI	GGATG	2 cut(s)	437, 620
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	11, 14, 49
FspBI	CTAG	5 cut(s)	95, 251, 419, 713, 766
GluI	GCNGC	3 cut(s)	11, 14, 49
HaeIII	GGCC	1 cut(s)	113
HgaI	GACGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	72, 118, 202, 468, 749
HinfI	GANTC	7 cut(s)	82, 127, 143, 263, 395, 656, 673
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	4 cut(s)	343, 377, 390, 613
Hpy188I	TCNGA	4 cut(s)	262, 322, 367, 400
Hpy188III	TCNNGA	5 cut(s)	131, 267, 280, 413, 521
Hpy8I	GTNNAC	4 cut(s)	343, 377, 390, 613
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	451, 688
HpyCH4III	ACNGT	2 cut(s)	44, 591
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	140, 161, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 158
HpyF3I	CTNAG	4 cut(s)	90, 237, 381, 393
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	5 cut(s)	72, 118, 202, 468, 749
Kzo9I	GATC	3 cut(s)	247, 409, 544
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	3 cut(s)	22, 25, 60
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	5 cut(s)	95, 251, 419, 713, 766
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	63, 445
MalI	GATC	3 cut(s)	249, 411, 546
MboI	GATC	3 cut(s)	247, 409, 544
MboII	GAAGA	9 cut(s)	146, 190, 218, 464, 515, 536, 583, 649, 673
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	534, 667, 695
MlyI	GAGTC	3 cut(s)	76, 404, 682
MnlI	CCTC	8 cut(s)	51, 103, 287, 371, 376, 415, 507, 571
MseI	TTAA	5 cut(s)	255, 497, 690, 698, 726
MwoI	GCNNNNNNNGC	2 cut(s)	22, 158
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	3 cut(s)	247, 409, 544
NlaIII	CATG	5 cut(s)	72, 118, 202, 468, 749
NlaIV	GGNNCC	1 cut(s)	734
NmuCI	GTSAC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfeI	GAWTC	4 cut(s)	127, 143, 263, 656
PkrI	GCNGC	3 cut(s)	12, 15, 50
PleI	GAGTC	3 cut(s)	76, 403, 681
PpsI	GAGTC	3 cut(s)	76, 403, 681
PpuMI	RGGWCCY	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	732
PspEI	GGTNACC	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	1 cut(s)	732
PspPPI	RGGWCCY	1 cut(s)	732
PspXI	VCTCGAGB	1 cut(s)	55
RsaI	GTAC	2 cut(s)	389, 706
RsaNI	GTAC	2 cut(s)	388, 705
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	5 cut(s)	255, 497, 690, 698, 726
SatI	GCNGC	3 cut(s)	11, 14, 49
Sau3AI	GATC	3 cut(s)	247, 409, 544
Sau96I	GGNCC	1 cut(s)	732
SchI	GAGTC	3 cut(s)	76, 404, 682
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	732
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	534, 667, 695
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	5 cut(s)	95, 251, 419, 713, 766
SstI	GAGCTC	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	44, 591
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	6 cut(s)	56, 80, 217, 329, 671, 684
TasI	AATT	3 cut(s)	534, 667, 695
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	4 cut(s)	127, 143, 263, 656
Tru1I	TTAA	5 cut(s)	255, 497, 690, 698, 726
Tru9I	TTAA	5 cut(s)	255, 497, 690, 698, 726
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	3 cut(s)	10, 13, 48
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	4 cut(s)	17, 441, 453, 498
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	732
XapI	RAATTY	1 cut(s)	534
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	5 cut(s)	95, 251, 419, 713, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.