Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Reverse (-)

20184952 .. 20187975

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATGAAGAGGCAGCAGCAGGCGTCGCACTACTGGTTGTTTGACAGTCGAAGCAACTCGAGAAGATCTCCATGGCTTCAGTCGACTCTGGCTGAGCTAGAGAAGAATACGGAGGCCATGCTAAAGCTCATTCAGGAAGATGCAGATTCCTTTGCGCAACGTGCAGAGATGTATTACAAGAAGCGACCGCAGCTAATTGGCATGGTTGAAGAATTTTATCGAGCTCACAGGTCATTGGCTGAGAGATTTGATCTAGTTAAGTCTGATTCAGGAAGTCGCCTCTTGACAACATTAGGGTCTCCATTCTCAACCAAATGCCATTCAGAGAAGTCGATGAGTGTAGTGGATGAAACCTATGATAGCCTCTCCGAAACCTGTGAACCTGAGGAGTACACTGAGTCTGAAGTTGATGATCCTGACCTGGAGGATGAAACCCCAGTTGATAAAGTAACAGAAGAGAAGGTTTCATGTGGAGTTAGTAAGGATGAAGTGAGGAAGTTAAAGGAAGAATTAGAGAGGCTTCAGGAGGAGAATAGAATTCAGAAGGATCAGCTAAAGCAGAAAGATGATGAGAAGAGAGAGGTAATAAGACAGTTGAGTGTAGCTGTGGATGTTTACAAACAGGAAAATGTGAGACTGAGGAAGTATCTTGCCCGAGAATCAGCAGATAATTCGAGTCCCTACTTTGAGTTTAACAAACTAAAGGGTACATTTCTAGGGAAGTTGTTTAACAGGTCCCCAAAGTCTCATGCTCCAATTGTTGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

257

Amino Acids

29.87

Weight (kDa)

5.41

Isoelectric Point (pI)

68.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	2 - 55	1.7e-23	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	407, 555
AcsI	RAATTY	2 cut(s)	212, 537
AcuI	CTGAAG	3 cut(s)	62, 423, 506
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	392, 709
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	6 cut(s)	97, 127, 193, 224, 553, 605
AluI	AGCT	6 cut(s)	97, 127, 193, 224, 553, 605
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	3 cut(s)	303, 628, 750
AlwI	GGATC	2 cut(s)	407, 555
Ama87I	CYCGRG	2 cut(s)	58, 654
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	13, 16, 190
ApoI	RAATTY	2 cut(s)	212, 537
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	735
AvaI	CYCGRG	2 cut(s)	58, 654
AvaII	GGWCC	1 cut(s)	735
AxyI	CCTNAGG	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	3 cut(s)	25, 28, 202
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	1 cut(s)	422
BcoDI	GTCTC	3 cut(s)	303, 628, 750
BfaI	CTAG	4 cut(s)	98, 254, 716, 769
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	3 cut(s)	14, 17, 191
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	3 cut(s)	15, 18, 192
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	735
BmeT110I	CYCGRG	2 cut(s)	58, 654
BmgT120I	GGNCC	1 cut(s)	735
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpmI	CTGGAG	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	38, 437
Bse21I	CCTNAGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	4 cut(s)	352, 433, 490, 616
BseMII	CTCAG	5 cut(s)	84, 231, 375, 387, 629
BseNI	ACTGG	2 cut(s)	38, 437
BseRI	GAGGAG	2 cut(s)	401, 542
BseXI	GCAGC	3 cut(s)	25, 28, 202
BsgI	GTGCAG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	2 cut(s)	58, 654
BslFI	GGGAC	2 cut(s)	663, 721
BsmAI	GTCTC	3 cut(s)	303, 628, 750
BsmFI	GGGAC	2 cut(s)	663, 721
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	2 cut(s)	58, 654
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	4 cut(s)	65, 250, 412, 547
Bsp1720I	GCTNAGC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	5 cut(s)	85, 232, 376, 388, 630
BspLI	GGNNCC	1 cut(s)	737
BspPI	GGATC	2 cut(s)	407, 555
BspTNI	GGTCTC	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	38, 437
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	4 cut(s)	65, 250, 412, 547
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	47, 594
Bst6I	CTCTTC	3 cut(s)	2, 450, 569
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	5 cut(s)	93, 240, 384, 396, 638
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	352, 433, 490, 616
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	4 cut(s)	68, 253, 415, 550
BstMAI	GTCTC	3 cut(s)	303, 628, 750
BstMBI	GATC	4 cut(s)	65, 250, 412, 547
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 161, 190
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	25, 28, 202
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	352, 433, 490, 616
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	735
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	391, 708
CviAII	CATG	5 cut(s)	72, 118, 202, 468, 749
CviQI	GTAC	2 cut(s)	391, 708
DdeI	CTNAG	5 cut(s)	93, 240, 384, 396, 638
DpnI	GATC	4 cut(s)	67, 252, 414, 549
DpnII	GATC	4 cut(s)	65, 250, 412, 547
Eam1104I	CTCTTC	3 cut(s)	2, 450, 569
EarI	CTCTTC	3 cut(s)	2, 450, 569
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	735
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	3 cut(s)	62, 423, 506
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	2 cut(s)	58, 654
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	5 cut(s)	75, 121, 205, 471, 752
FaiI	YATR	6 cut(s)	73, 119, 203, 357, 469, 750
FaqI	GGGAC	2 cut(s)	663, 721
FatI	CATG	5 cut(s)	71, 117, 201, 467, 748
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	14, 17, 191
FokI	GGATG	4 cut(s)	359, 440, 497, 623
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	14, 17, 191
FspBI	CTAG	4 cut(s)	98, 254, 716, 769
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	3 cut(s)	14, 17, 191
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	75, 121, 205, 471, 752
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	6 cut(s)	85, 146, 266, 398, 659, 676
Hpy166II	GTNNAC	4 cut(s)	84, 380, 393, 616
Hpy188I	TCNGA	5 cut(s)	265, 325, 370, 403, 543
Hpy188III	TCNNGA	6 cut(s)	60, 134, 270, 283, 416, 524
Hpy8I	GTNNAC	4 cut(s)	84, 380, 393, 616
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	454, 538
HpyCH4III	ACNGT	2 cut(s)	47, 594
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	143, 164, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 161, 190
HpyF3I	CTNAG	5 cut(s)	93, 240, 384, 396, 638
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	75, 121, 205, 471, 752
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	4 cut(s)	65, 250, 412, 547
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	3 cut(s)	25, 28, 202
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	4 cut(s)	98, 254, 716, 769
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	4 cut(s)	67, 252, 414, 549
MboI	GATC	4 cut(s)	65, 250, 412, 547
MboII	GAAGA	8 cut(s)	19, 75, 115, 149, 221, 467, 518, 586
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	6 cut(s)	195, 212, 509, 537, 670, 756
MlyI	GAGTC	3 cut(s)	79, 407, 685
MseI	TTAA	4 cut(s)	258, 500, 693, 729
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	25, 161, 190
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	4 cut(s)	65, 250, 412, 547
NlaIII	CATG	5 cut(s)	75, 121, 205, 471, 752
NlaIV	GGNNCC	1 cut(s)	737
NsbI	TGCGCA	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	146, 266, 659
PkrI	GCNGC	3 cut(s)	15, 18, 192
PleI	GAGTC	3 cut(s)	79, 406, 684
PpsI	GAGTC	3 cut(s)	79, 406, 684
PpuMI	RGGWCCY	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	1 cut(s)	735
PspPPI	RGGWCCY	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	2 cut(s)	392, 709
RsaNI	GTAC	2 cut(s)	391, 708
SacI	GAGCTC	1 cut(s)	226
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	4 cut(s)	258, 500, 693, 729
SatI	GCNGC	3 cut(s)	14, 17, 191
Sau3AI	GATC	4 cut(s)	65, 250, 412, 547
Sau96I	GGNCC	1 cut(s)	735
SchI	GAGTC	3 cut(s)	79, 407, 685
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	735
SlaI	CTCGAG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	6 cut(s)	195, 212, 509, 537, 670, 756
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	4 cut(s)	98, 254, 716, 769
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	47, 594
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	6 cut(s)	49, 59, 83, 220, 332, 674
TasI	AATT	6 cut(s)	195, 212, 509, 537, 670, 756
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	146, 266, 659
Tru1I	TTAA	4 cut(s)	258, 500, 693, 729
Tru9I	TTAA	4 cut(s)	258, 500, 693, 729
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	3 cut(s)	13, 16, 190
TspDTI	ATGAA	5 cut(s)	20, 363, 444, 456, 501
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	735
XapI	RAATTY	2 cut(s)	212, 537
XhoI	CTCGAG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	4 cut(s)	98, 254, 716, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.