Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Reverse (-)

41518452 .. 41521935

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1298500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCAAACCACTCTCTCTGGTCATATCTGGAGCACAAGACGGATGCCATGCTAAAGCTGATTCAGGAAGATGCAGATTCATTTGCTCAACGTGCAGAGATGTATTACAAAAAGCGGCCGCAGCTGATCAGCATGGTGGAAGAATTTTACCGCATTCACCGTTCGTTGGCTGAGCGGTATGATCAAGTGAAGTCTGATACGGGAACACGTCTGCTGACAACGTTAGGGTCTCCATTCTCTTCAACGAAATGCCAGTCTGAGAAGGCGATGAGTGTGGTGGATTTGAGCTTCGATAGCCACTCCGAAACCTGCTGCGATGAACCTGAGGAGAGTATTCCGAGTCTGATGTTGATGATCCTGAACCGGAGGATGAACCCCGAGTTGATGAAGAAACAAAAGAGAATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

138

Amino Acids

16.02

Weight (kDa)

6.51

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	10 - 62	2.6e-24	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	178
AciI	CCGC	4 cut(s)	118, 122, 154, 178
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	9, 246
AjiI	CACGTC	1 cut(s)	212
AluBI	AGCT	3 cut(s)	61, 127, 291
AluI	AGCT	3 cut(s)	61, 127, 291
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	124, 315
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	136, 302
BclI	TGATCA	2 cut(s)	129, 184
BcoDI	GTCTC	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	119, 122, 125, 316
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	4 cut(s)	120, 123, 126, 317
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	212
BmsI	GCATC	2 cut(s)	37, 64
BpmI	CTGGAG	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	256
Bse21I	CCTNAGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	52, 378
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	165, 252, 318
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	344
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	136, 302
BsgI	GTGCAG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	237
BsmI	GAATGC	2 cut(s)	156, 411
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	129, 184, 357
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	4 cut(s)	118, 122, 154, 178
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	3 cut(s)	166, 253, 319
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	129, 184, 357
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	174, 261, 327
BstF5I	GGATG	2 cut(s)	52, 378
BstKTI	GATC	3 cut(s)	132, 187, 360
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	129, 184, 357
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 124, 297
BstV1I	GCAGC	2 cut(s)	136, 302
BstZI	CGGCCG	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	121
BtgZI	GCGATG	2 cut(s)	284, 333
BtrI	CACGTC	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	52, 378
BveI	ACCTGC	1 cut(s)	320
CciNI	GCGGCCGC	1 cut(s)	119
CviAII	CATG	2 cut(s)	52, 136
CviJI	RGCY	7 cut(s)	5, 61, 121, 127, 173, 291, 300
CviKI_1	RGCY	7 cut(s)	5, 61, 121, 127, 173, 291, 300
DdeI	CTNAG	3 cut(s)	174, 261, 327
DpnI	GATC	3 cut(s)	131, 186, 359
DpnII	GATC	3 cut(s)	129, 184, 357
EaeI	YGGCCR	1 cut(s)	119
EagI	CGGCCG	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	237
Eco52I	CGGCCG	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	411
FaeI	CATG	2 cut(s)	55, 139
FaiI	YATR	4 cut(s)	28, 53, 137, 183
FatI	CATG	2 cut(s)	51, 135
FbaI	TGATCA	2 cut(s)	129, 184
Fnu4HI	GCNGC	4 cut(s)	119, 122, 125, 316
FokI	GGATG	2 cut(s)	59, 385
Fsp4HI	GCNGC	4 cut(s)	119, 122, 125, 316
GluI	GCNGC	4 cut(s)	119, 122, 125, 316
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	2 cut(s)	55, 139
HinfI	GANTC	3 cut(s)	64, 80, 343
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	5 cut(s)	199, 262, 307, 342, 348
Hpy188III	TCNNGA	3 cut(s)	32, 68, 361
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	3 cut(s)	94, 211, 224
HpyCH4V	TGCA	3 cut(s)	77, 98, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 124, 297
HpyF3I	CTNAG	3 cut(s)	174, 261, 327
HpySE526I	ACGT	3 cut(s)	94, 211, 224
Hsp92II	CATG	2 cut(s)	55, 139
Ksp22I	TGATCA	2 cut(s)	129, 184
Kzo9I	GATC	3 cut(s)	129, 184, 357
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	8 cut(s)	7, 17, 53, 269, 325, 339, 374, 380
Lsp1109I	GCAGC	2 cut(s)	136, 302
LweI	GCATC	2 cut(s)	37, 64
MaeII	ACGT	3 cut(s)	94, 211, 224
MalI	GATC	3 cut(s)	131, 186, 359
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	3 cut(s)	129, 184, 357
MboII	GAAGA	4 cut(s)	83, 155, 234, 403
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	2 cut(s)	322, 363
Mph1103I	ATGCAT	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	367
Mva1269I	GAATGC	2 cut(s)	156, 411
MwoI	GCNNNNNNNGC	3 cut(s)	95, 124, 297
NdeII	GATC	3 cut(s)	129, 184, 357
NlaIII	CATG	2 cut(s)	55, 139
NotI	GCGGCCGC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	411
PctI	GAATGC	2 cut(s)	156, 411
PfeI	GAWTC	2 cut(s)	64, 80
PkrI	GCNGC	4 cut(s)	120, 123, 126, 317
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	127
SatI	GCNGC	4 cut(s)	119, 122, 125, 316
Sau3AI	GATC	3 cut(s)	129, 184, 357
SchI	GAGTC	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	8 cut(s)	63, 97, 129, 214, 227, 293, 314, 328
SfaNI	GCATC	2 cut(s)	37, 64
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	118, 122, 154, 178
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	3 cut(s)	97, 214, 227
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	146
TauI	GCSGC	2 cut(s)	121, 124
TfiI	GAWTC	2 cut(s)	64, 80
TseI	GCWGC	2 cut(s)	124, 315
TspDTI	ATGAA	4 cut(s)	72, 336, 389, 404
TspGWI	ACGGA	1 cut(s)	59
XapI	RAATTY	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.