Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007061

Physical Location & Seq

Genomic Coordinates Forward (+)

14494529 .. 14500581

Gene Structure 6053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTTCCAGAATGTTGGAAAGAGATACTAAGGTTATGCAAATTGGATCTGATCTTCCTGACATAGAAAAGGCATCATTAGAGATTCAAATCCCTAAGCCCTCTTTGAAATCCCAGGTAAGGAGGAGGAGGAGGAAGAAGATGAATAGGCAGCAGCAGGCGTCGCACTACTGGTTGTTTGACAGTCGCAGCAACTCGAGGCGGTCACCATGGCTTCAATCGACTCTGGCTGAGCTAGAAAAGAATACGGAGGCCATGCTAAAGCTGATTCAGGAAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTATTACAAGAAGAGACCACAGCTAATCGGCATGGTTGAAGAATTTTATCGAGCTCACAGGTCATTAGCTGAGAGATATGATCTAGTTAAGTCTGATTCGGGAACGCGCCTCCTGACAACATTAGGGTCTCCATTCTCAAACAAATGCCATTCAGAGAAGTCGATGAGTGTGGTGGACGAAACCTACGACAGCCTCTCTGAAACCTGTGAACCTGAGGAGTACACCGAGTCTGAAGTTGATGATCCTGACCTAGAGGATGAAACTTCAGTTGATAAAGTAACAGAAGAGAAGGTTTCATGTGGGGTTAGTGATGATGAAGTGAGAAAGTTAAGGGAAGAAATAGAGAGGCTTCAGGAAGAGAATAGAATTCAAAAGGATCAACTAAAGCAGAAAGATGATGAGAAGAGAGAGGTAATAAGACAGTTGAGTATGGCTGTGGATGTTTACAAACAGGAGAATGTGAAGCTGAAGACGTATCTTGCCCGAGAATCAGCAGATAATTCGAGTCCCTTCTTCGAGTTTAACAAATTAAAGGGAGACCCAGATGGTGAAAAACCCAATTCTGGTTCAGGAGCAGCAACAGTAGCTTCAGGGTTTGGTGGGCTTGGGCTTGATGGAATTGTGGGCAGTGATGATTCACTTGGAGAAACTGGCACACCAGAAGGTGAAGGAAACAAAGGAGAAATATCTGGGGATAAGGTTGGAGAGGAAGATAGTGGGGCTGGAGCATCTGGTAAAGCTGCAGGTGCTGCAGAGATTGAGGAAATCTTAGTAGCTAGTGAAGAAGAAGAAGAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

371

Amino Acids

41.46

Weight (kDa)

4.7

Isoelectric Point (pI)

68.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	58 - 130	3.6e-32	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03470 AT1G03470 AT1G03470 AT1G03470 AT4G03153
fragaria_vesca	FvH4_2g24780 FvH4_2g24780 FvH4_2g24780 FvH4_2g24780
malus_domestica	MD11G1298400.v1.1 MD11G1298500.v1.1
prunus_persica	Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1 Prupe.8G252800_v2.0.a1
pyrus_communis	pycom03g22020 pycom11g26200
rosa_chinensis	RchiOBHm_Chr6g0292611
rosa_laevigata	RLG00000012007
rosa_multiflora	Rmu_sc0000515.1_g000006
rosa_roxburghii	Rroxscaffold_7G00174870
rosa_rugosa	Rorug06G0228300
rosa_samantha	Rh6AG341500 Rh6CG355800
rosa_wichuraiana	Rw6G029760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	1043
AccII	CGCG	1 cut(s)	415
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	3 cut(s)	55, 545, 693
AcsI	RAATTY	2 cut(s)	350, 675
AcuI	CTGAAG	5 cut(s)	558, 561, 644, 797, 882
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	120, 872
AgsI	TTSAA	5 cut(s)	89, 109, 218, 347, 680
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	9 cut(s)	235, 265, 331, 362, 377, 775, 896, 1049, 1085
AluI	AGCT	9 cut(s)	235, 265, 331, 362, 377, 775, 896, 1049, 1085
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	316, 441, 840
AlwI	GGATC	3 cut(s)	55, 545, 693
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	2 cut(s)	196, 792
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	6 cut(s)	151, 154, 189, 884, 1049, 1058
ApoI	RAATTY	2 cut(s)	350, 675
AspLEI	GCGC	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	198, 869, 986
AvaI	CYCGRG	2 cut(s)	196, 792
AxyI	CCTNAGG	1 cut(s)	522
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BanII	GRGCYC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	6 cut(s)	163, 166, 201, 896, 1036, 1045
BccI	CCATC	2 cut(s)	848, 917
BcgI	CGANNNNNNTGC	2 cut(s)	792, 826
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	316, 441, 840
BfaI	CTAG	4 cut(s)	236, 392, 560, 1086
BfmI	CTRYAG	2 cut(s)	1050, 1059
BfuAI	ACCTGC	1 cut(s)	1043
BisI	GCNGC	6 cut(s)	152, 155, 190, 885, 1050, 1059
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	6 cut(s)	153, 156, 191, 886, 1051, 1060
Bme1390I	CCNGG	1 cut(s)	116
BmeT110I	CYCGRG	2 cut(s)	196, 792
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	83, 268, 1046
BpiI	GAAGAC	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	1053
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	3 cut(s)	316, 441, 840
BsaJI	CCNNGG	2 cut(s)	114, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 872
Bse1I	ACTGG	2 cut(s)	176, 964
Bse21I	CCTNAGG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	114, 209
BseGI	GGATG	2 cut(s)	571, 754
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	120, 872
BseMII	CTCAG	3 cut(s)	222, 369, 513
BseNI	ACTGG	2 cut(s)	176, 964
BseRI	GAGGAG	4 cut(s)	139, 142, 145, 539
BseXI	GCAGC	6 cut(s)	163, 166, 201, 896, 1036, 1045
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	2 cut(s)	196, 792
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	2 cut(s)	120, 872
BsmAI	GTCTC	3 cut(s)	316, 441, 840
BsmFI	GGGAC	1 cut(s)	801
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	3 cut(s)	316, 441, 840
BsoBI	CYCGRG	2 cut(s)	196, 792
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	47, 52, 388, 550, 685
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	3 cut(s)	223, 370, 514
BspFNI	CGCG	1 cut(s)	415
BspMAI	CTGCAG	2 cut(s)	1054, 1063
BspMI	ACCTGC	1 cut(s)	1043
BspPI	GGATC	3 cut(s)	55, 545, 693
BspTNI	GGTCTC	3 cut(s)	316, 441, 840
BsrI	ACTGG	2 cut(s)	176, 964
BssECI	CCNNGG	2 cut(s)	114, 209
BssMI	GATC	5 cut(s)	47, 52, 388, 550, 685
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	185, 732, 892
Bst6I	CTCTTC	4 cut(s)	314, 588, 660, 707
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	6 cut(s)	30, 96, 231, 378, 522, 1078
BstDSI	CCRYGG	1 cut(s)	209
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	571, 754
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	5 cut(s)	50, 55, 391, 553, 688
BstMAI	GTCTC	3 cut(s)	316, 441, 840
BstMBI	GATC	5 cut(s)	47, 52, 388, 550, 685
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 299, 893, 1055, 1058
BstNI	CCWGG	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	1050, 1059
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	6 cut(s)	163, 166, 201, 896, 1036, 1045
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	571, 754
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	1 cut(s)	943
BveI	ACCTGC	1 cut(s)	1043
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	1058
CfoI	GCGC	1 cut(s)	417
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	4 cut(s)	210, 256, 340, 606
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	6 cut(s)	30, 96, 231, 378, 522, 1078
DpnI	GATC	5 cut(s)	49, 54, 390, 552, 687
DpnII	GATC	5 cut(s)	47, 52, 388, 550, 685
Eam1104I	CTCTTC	4 cut(s)	314, 588, 660, 707
EarI	CTCTTC	4 cut(s)	314, 588, 660, 707
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	3 cut(s)	316, 441, 840
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	5 cut(s)	558, 561, 644, 797, 882
Eco81I	CCTNAGG	1 cut(s)	522
Eco88I	CYCGRG	2 cut(s)	196, 792
Eco91I	GGTNACC	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	4 cut(s)	213, 259, 343, 609
FaiI	YATR	8 cut(s)	38, 65, 211, 257, 341, 387, 607, 740
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	4 cut(s)	209, 255, 339, 605
Fnu4HI	GCNGC	6 cut(s)	152, 155, 190, 885, 1050, 1059
FokI	GGATG	2 cut(s)	578, 761
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	6 cut(s)	152, 155, 190, 885, 1050, 1059
FspBI	CTAG	4 cut(s)	236, 392, 560, 1086
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	6 cut(s)	152, 155, 190, 885, 1050, 1059
GsuI	CTGGAG	1 cut(s)	1053
HaeIII	GGCC	1 cut(s)	254
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	213, 259, 343, 609
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HinfI	GANTC	9 cut(s)	85, 223, 268, 284, 404, 536, 797, 814, 944
HphI	GGTGA	3 cut(s)	198, 869, 986
Hpy166II	GTNNAC	4 cut(s)	484, 518, 531, 754
Hpy188I	TCNGA	5 cut(s)	52, 403, 463, 508, 541
Hpy188III	TCNNGA	8 cut(s)	9, 59, 272, 408, 421, 554, 662, 879
Hpy8I	GTNNAC	4 cut(s)	484, 518, 531, 754
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	592, 829, 965, 971
HpyCH4III	ACNGT	3 cut(s)	185, 732, 892
HpyCH4IV	ACGT	2 cut(s)	298, 782
HpyCH4V	TGCA	5 cut(s)	40, 281, 302, 1052, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 299, 893, 1055, 1058
HpyF3I	CTNAG	6 cut(s)	30, 96, 231, 378, 522, 1078
HpySE526I	ACGT	2 cut(s)	298, 782
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	4 cut(s)	213, 259, 343, 609
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	47, 52, 388, 550, 685
LmnI	GCTCC	2 cut(s)	881, 1034
Lsp1109I	GCAGC	6 cut(s)	163, 166, 201, 896, 1036, 1045
LweI	GCATC	3 cut(s)	83, 268, 1046
MaeI	CTAG	4 cut(s)	236, 392, 560, 1086
MaeII	ACGT	2 cut(s)	298, 782
MaeIII	GTNAC	2 cut(s)	204, 586
MalI	GATC	5 cut(s)	49, 54, 390, 552, 687
MboI	GATC	5 cut(s)	47, 52, 388, 550, 685
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	7 cut(s)	42, 350, 675, 808, 836, 868, 927
MlyI	GAGTC	3 cut(s)	217, 545, 823
MmeI	TCCRAC	1 cut(s)	991
MseI	TTAA	4 cut(s)	396, 638, 831, 839
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	5 cut(s)	163, 299, 893, 1055, 1058
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	47, 52, 388, 550, 685
NlaIII	CATG	4 cut(s)	213, 259, 343, 609
NmuCI	GTSAC	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	1043
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PfeI	GAWTC	6 cut(s)	85, 268, 284, 404, 797, 944
PkrI	GCNGC	6 cut(s)	153, 156, 191, 886, 1051, 1060
PleI	GAGTC	3 cut(s)	217, 544, 822
PpsI	GAGTC	3 cut(s)	217, 544, 822
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	114
PspXI	VCTCGAGB	1 cut(s)	196
PstI	CTGCAG	2 cut(s)	1054, 1063
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	4 cut(s)	396, 638, 831, 839
SatI	GCNGC	6 cut(s)	152, 155, 190, 885, 1050, 1059
Sau3AI	GATC	5 cut(s)	47, 52, 388, 550, 685
SchI	GAGTC	3 cut(s)	217, 545, 823
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	83, 268, 1046
SfcI	CTRYAG	2 cut(s)	1050, 1059
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	7 cut(s)	42, 350, 675, 808, 836, 868, 927
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	4 cut(s)	236, 392, 560, 1086
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	185, 732, 892
TaiI	ACGT	2 cut(s)	301, 785
TaqI	TCGA	6 cut(s)	197, 221, 358, 470, 812, 825
TasI	AATT	7 cut(s)	42, 350, 675, 808, 836, 868, 927
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	6 cut(s)	85, 268, 284, 404, 797, 944
Tru1I	TTAA	4 cut(s)	396, 638, 831, 839
Tru9I	TTAA	4 cut(s)	396, 638, 831, 839
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	6 cut(s)	151, 154, 189, 884, 1049, 1058
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	4 cut(s)	158, 582, 594, 639
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	943
XapI	RAATTY	2 cut(s)	350, 675
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	4 cut(s)	236, 392, 560, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.