Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

1424902 .. 1428062

Gene Structure 3161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGCACTCAGATTCAGGCGAAGCGACCGCTGATGGCGATAAAGCTTCTACAGAAAACAGCAAAAAACGGAAGCTTAAGACTCCTATGCAAGTTATGGCGCTTGAGAATTTCTACAATGAGCATAAGTATCCGACTGAAGAAATGAAGGGCAAGTTAGCAGAGGAAGTTGGATTAACTGAGAAGCAAGTTTCAGGTTGGTTCTGCCATAGAAGGTTAAAAGACAAACGTCATGTAAAAGAAGATGGGAATGCCATTGGGAGCCAAGATCGGTCAAGCGTTGTTCTTCAGGATCGTGGAAGTGGGCTTCGACAGGATTCATGTGGTAGTACAAAGCAAACGGATTATTGGAACCCCAAGCCTAGGGAAGTTGAAAGTCAAAGGCTTTATATGGGAAATGCTGATGGTGAAGATAGTACATCTTCTGATCGTAGCTCATCATTACGTAAGAATCTTGTCTCTAGCAAAGATGGAATTCGCGATGTGGAAAGTTCTAGATATGTTGCACATAAAGACGTTATTCAGCATCCTCAGTTCATGAGAAGCTATGGGTATAATAAGCCTTCGGGATACTTGAAAGTGAAGGGAGAGAGTGAGAATTTTGCTATCACTGCCGTAAAGAGACAATTAGGAAGACAATACCAAGAGGATGGTCCACCTCTGGGGGTTGAATTTGATCCTCTTCCTCCCGGTGCATTTGAGCCTCAGACTAATCCTATAGTTCACGAGCCAATATATGTTGGGAATCAGAGACGGCCTCACCTTCCACATTTACTTGGAACGAGGAAGAGCTTTAATCCTGGTCCTAGCTATGAATTAGCTCGTAAATCAAAGTTGCATTCGCCAGATCCAGATTCAGAGGATGATGAGCATGATGATGATGACAACATAATGGTTGGAATGGAGCCTGGTCTAAGAGATAAGAAAAGTTTTGGGGAACCAAGACTGAAATCCCCTTCTACCAGTTTCTATAATTCTGTACCTCGCCACAAATCGTTTAAAGAGACATTCAAAGGTTCACCACGGGAAATCCCTGTAACTAACAGCAAGAAGGGTTGGATAAGTTCCAAAAGTTGGGCTGAAGGGTCGAGAAACCATCTGGTTGCCAACGTCCAAAATCTTTCTGGAAGCAATATTGAAACCAATCAGTCTCATGATTATGATAATAATATATCTAATGGCGGACGCAAGACGGGATATCTCACTAAATCTTCGAAGCTGTTACCTCCGAGTAGAAGCAGATCCCCTGAGTCAATGGATAGAGGTCCATCTTCTGGGATGGCAGGAATATATCACGGGGAGAGGAATCAAATGAAAATGCAGAGAGAGAAATTGCATTCGACTGATGAACCACCGGTTGCCAAACGAGTGAAACATGGGTATATTCAGCAAGTATATGCACCAAAATCATCATCATACAGCGAGATTCTTGAACGAAAAAGCCAGATAAATCGGTCTGGTGTGGAACTGCCTTCTAGTTTAAGCGGGGACGATGAGACTGACGAATCTAGCTCGTCAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

507

Amino Acids

56.82

Weight (kDa)

8.63

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	21 - 76	6e-16	Homeodomain
Homeobox_KN	PF05920	41 - 71	6.5e-07	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1071, 1271
AccII	CGCG	1 cut(s)	477
AciI	CCGC	3 cut(s)	27, 1179, 1482
AclWI	GGATC	4 cut(s)	297, 668, 839, 1233
AcsI	RAATTY	4 cut(s)	106, 471, 595, 668
AcuI	CTGAAG	3 cut(s)	156, 269, 1098
AfaI	GTAC	3 cut(s)	328, 415, 978
AfiI	CCNNNNNNNGG	4 cut(s)	360, 659, 1071, 1271
AflII	CTTAAG	1 cut(s)	74
AgeI	ACCGGT	1 cut(s)	1351
AgsI	TTSAA	6 cut(s)	371, 574, 668, 1009, 1136, 1430
AjnI	CCWGG	2 cut(s)	796, 904
AluBI	AGCT	9 cut(s)	44, 73, 432, 543, 789, 807, 818, 1216, 1509
AluI	AGCT	9 cut(s)	44, 73, 432, 543, 789, 807, 818, 1216, 1509
Alw26I	GTCTC	6 cut(s)	460, 613, 742, 995, 1152, 1487
AlwI	GGATC	4 cut(s)	297, 668, 839, 1233
AoxI	GGCC	1 cut(s)	752
ApoI	RAATTY	4 cut(s)	106, 471, 595, 668
AsiGI	ACCGGT	1 cut(s)	1351
AspA2I	CCTAGG	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	650, 800, 1262
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	3 cut(s)	416, 749, 1008
AsuII	TTCGAA	1 cut(s)	1211
AvaII	GGWCC	3 cut(s)	650, 800, 1262
AvrII	CCTAGG	1 cut(s)	359
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	637
BccI	CCATC	8 cut(s)	26, 236, 395, 461, 641, 1101, 1270, 1273
BceAI	ACGGC	2 cut(s)	596, 767
BciT130I	CCWGG	2 cut(s)	798, 906
BciVI	GTATCC	2 cut(s)	138, 560
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	6 cut(s)	460, 613, 742, 995, 1152, 1487
BfaI	CTAG	6 cut(s)	360, 459, 492, 804, 1473, 1506
BfmI	CTRYAG	2 cut(s)	48, 714
BfoI	RGCGCY	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	138, 560
BlnI	CCTAGG	1 cut(s)	359
Bme1390I	CCNGG	3 cut(s)	687, 798, 906
Bme18I	GGWCC	3 cut(s)	650, 800, 1262
BmgT120I	GGNCC	3 cut(s)	650, 800, 1262
BmiI	GGNNCC	4 cut(s)	260, 350, 903, 936
BmrFI	CCNGG	3 cut(s)	687, 798, 906
BmsI	GCATC	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	637
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
Bpu14I	TTCGAA	1 cut(s)	1211
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	359, 1019
BsaWI	WCCGGW	1 cut(s)	1351
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 659, 1071, 1271
Bse118I	RCCGGY	1 cut(s)	1351
Bse1I	ACTGG	1 cut(s)	960
BseBI	CCWGG	2 cut(s)	798, 906
BseDI	CCNNGG	2 cut(s)	359, 1019
BseGI	GGATG	4 cut(s)	523, 652, 865, 1281
BseLI	CCNNNNNNNGG	4 cut(s)	360, 659, 1071, 1271
BseMII	CTCAG	5 cut(s)	21, 168, 542, 716, 1236
BseNI	ACTGG	1 cut(s)	960
Bsh1236I	CGCG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	754
BshTI	ACCGGT	1 cut(s)	1351
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	687, 1352
BslFI	GGGAC	1 cut(s)	1499
BslI	CCNNNNNNNGG	4 cut(s)	360, 659, 1071, 1271
BsmAI	GTCTC	6 cut(s)	460, 613, 742, 995, 1152, 1487
BsmBI	CGTCTC	1 cut(s)	742
BsmFI	GGGAC	1 cut(s)	1499
BsmI	GAATGC	3 cut(s)	253, 835, 1333
BsnI	GGCC	1 cut(s)	754
Bsp119I	TTCGAA	1 cut(s)	1211
Bsp143I	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
Bsp68I	TCGCGA	1 cut(s)	477
BspACI	CCGC	3 cut(s)	27, 1179, 1482
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	5 cut(s)	20, 169, 541, 715, 1237
BspFNI	CGCG	1 cut(s)	477
BspHI	TCATGA	2 cut(s)	534, 1150
BspLI	GGNNCC	4 cut(s)	260, 350, 903, 936
BspPI	GGATC	4 cut(s)	297, 668, 839, 1233
BspQI	GCTCTTC	1 cut(s)	779
BspT104I	TTCGAA	1 cut(s)	1211
BspTI	CTTAAG	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	1351
BsrI	ACTGG	1 cut(s)	960
BssAI	RCCGGY	1 cut(s)	1351
BssECI	CCNNGG	2 cut(s)	359, 1019
BssMI	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	2 cut(s)	798, 906
Bst6I	CTCTTC	2 cut(s)	684, 779
BstAFI	CTTAAG	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	1211
BstDEI	CTNAG	6 cut(s)	7, 177, 528, 702, 911, 1245
BstDSI	CCRYGG	1 cut(s)	1019
BstF5I	GGATG	4 cut(s)	523, 652, 865, 1281
BstFNI	CGCG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	6 cut(s)	268, 292, 427, 676, 847, 1241
BstMAI	GTCTC	6 cut(s)	460, 613, 742, 995, 1152, 1487
BstMBI	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstNI	CCWGG	2 cut(s)	798, 906
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	685, 796, 904
BstSFI	CTRYAG	2 cut(s)	48, 714
BstSNI	TACGTA	1 cut(s)	443
BstUI	CGCG	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	637
BstX2I	RGATCY	2 cut(s)	844, 1238
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	2 cut(s)	844, 1238
BsuI	GTATCC	2 cut(s)	138, 560
BsuRI	GGCC	1 cut(s)	754
BtgI	CCRYGG	1 cut(s)	1019
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	4 cut(s)	523, 652, 865, 1281
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
BtuMI	TCGCGA	1 cut(s)	477
CciI	TCATGA	2 cut(s)	534, 1150
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	1351
Cfr13I	GGNCC	3 cut(s)	650, 800, 1262
CseI	GACGC	1 cut(s)	1191
Csp6I	GTAC	3 cut(s)	327, 414, 977
CspAI	ACCGGT	1 cut(s)	1351
CviAII	CATG	6 cut(s)	230, 318, 535, 869, 1151, 1373
CviQI	GTAC	3 cut(s)	327, 414, 977
DdeI	CTNAG	6 cut(s)	7, 177, 528, 702, 911, 1245
DpnI	GATC	6 cut(s)	267, 291, 426, 675, 846, 1240
DpnII	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
DraI	TTTAAA	1 cut(s)	997
Eam1104I	CTCTTC	2 cut(s)	684, 779
EarI	CTCTTC	2 cut(s)	684, 779
EciI	GGCGGA	1 cut(s)	1194
Eco105I	TACGTA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	359
Eco32I	GATATC	1 cut(s)	1196
Eco47I	GGWCC	3 cut(s)	650, 800, 1262
Eco57I	CTGAAG	3 cut(s)	156, 269, 1098
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	796, 904
EcoRV	GATATC	1 cut(s)	1196
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
Esp3I	CGTCTC	1 cut(s)	742
FaeI	CATG	6 cut(s)	233, 321, 538, 872, 1154, 1376
FaqI	GGGAC	1 cut(s)	1499
FatI	CATG	6 cut(s)	229, 317, 534, 868, 1150, 1372
FauI	CCCGC	1 cut(s)	1475
FokI	GGATG	4 cut(s)	510, 659, 872, 1288
FspBI	CTAG	6 cut(s)	360, 459, 492, 804, 1473, 1506
GlaI	GCGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	2 cut(s)	687, 1352
HgaI	GACGC	1 cut(s)	1191
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	6 cut(s)	233, 321, 538, 872, 1154, 1376
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	2 cut(s)	42, 71
HpaII	CCGG	2 cut(s)	687, 1352
HphI	GGTGA	3 cut(s)	416, 749, 1008
Hpy166II	GTNNAC	3 cut(s)	653, 721, 1016
Hpy188I	TCNGA	7 cut(s)	10, 132, 424, 705, 747, 856, 1227
Hpy8I	GTNNAC	3 cut(s)	653, 721, 1016
HpyAV	CCTTC	9 cut(s)	139, 204, 570, 574, 770, 963, 1042, 1073, 1479
HpyCH4IV	ACGT	4 cut(s)	226, 442, 513, 1107
HpyCH4V	TGCA	8 cut(s)	4, 88, 503, 692, 835, 1318, 1333, 1397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	6 cut(s)	7, 177, 528, 702, 911, 1245
HpySE526I	ACGT	4 cut(s)	226, 442, 513, 1107
Hsp92II	CATG	6 cut(s)	233, 321, 538, 872, 1154, 1376
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
LguI	GCTCTTC	1 cut(s)	779
LmnI	GCTCC	2 cut(s)	258, 901
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	6 cut(s)	360, 459, 492, 804, 1473, 1506
MaeII	ACGT	4 cut(s)	226, 442, 513, 1107
MaeIII	GTNAC	2 cut(s)	1033, 1218
MalI	GATC	6 cut(s)	267, 291, 426, 675, 846, 1240
MboI	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
MflI	RGATCY	2 cut(s)	844, 1238
MluCI	AATT	8 cut(s)	106, 471, 595, 623, 668, 812, 970, 1328
MlyI	GAGTC	2 cut(s)	73, 1256
MmeI	TCCRAC	4 cut(s)	148, 155, 874, 1034
MseI	TTAA	7 cut(s)	75, 173, 215, 792, 996, 1478, 1522
MslI	CAYNNNNRTG	2 cut(s)	873, 1155
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	2 cut(s)	687, 1352
MspR9I	CCNGG	3 cut(s)	687, 798, 906
Mva1269I	GAATGC	3 cut(s)	253, 835, 1333
MvaI	CCWGG	2 cut(s)	798, 906
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	608
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
NlaIII	CATG	6 cut(s)	233, 321, 538, 872, 1154, 1376
NlaIV	GGNNCC	4 cut(s)	260, 350, 903, 936
NruI	TCGCGA	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	1211
PagI	TCATGA	2 cut(s)	534, 1150
PciSI	GCTCTTC	1 cut(s)	779
PctI	GAATGC	3 cut(s)	253, 835, 1333
PfeI	GAWTC	8 cut(s)	11, 314, 448, 742, 851, 1303, 1423, 1502
PflMI	CCANNNNNTGG	2 cut(s)	1071, 1271
PinAI	ACCGGT	1 cut(s)	1351
PleI	GAGTC	2 cut(s)	73, 1255
PpsI	GAGTC	2 cut(s)	73, 1255
Ppu21I	YACGTR	1 cut(s)	443
PshAI	GACNNNNGTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	796, 904
PspGI	CCWGG	2 cut(s)	796, 904
PspN4I	GGNNCC	4 cut(s)	260, 350, 903, 936
PspPI	GGNCC	3 cut(s)	650, 800, 1262
PsuI	RGATCY	2 cut(s)	844, 1238
RruI	TCGCGA	1 cut(s)	477
RsaI	GTAC	3 cut(s)	328, 415, 978
RsaNI	GTAC	3 cut(s)	327, 414, 977
RseI	CAYNNNNRTG	2 cut(s)	873, 1155
SapI	GCTCTTC	1 cut(s)	779
SaqAI	TTAA	7 cut(s)	75, 173, 215, 792, 996, 1478, 1522
Sau3AI	GATC	6 cut(s)	265, 289, 424, 673, 844, 1238
Sau96I	GGNCC	3 cut(s)	650, 800, 1262
SchI	GAGTC	2 cut(s)	73, 1256
ScrFI	CCNGG	3 cut(s)	687, 798, 906
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	2 cut(s)	48, 714
SfuI	TTCGAA	1 cut(s)	1211
SinI	GGWCC	3 cut(s)	650, 800, 1262
SmiMI	CAYNNNNRTG	2 cut(s)	873, 1155
SmlI	CTYRAG	2 cut(s)	74, 101
SmoI	CTYRAG	2 cut(s)	74, 101
SnaBI	TACGTA	1 cut(s)	443
Sse9I	AATT	8 cut(s)	106, 471, 595, 623, 668, 812, 970, 1328
SsiI	CCGC	3 cut(s)	27, 1179, 1482
SspI	AATATT	1 cut(s)	1132
SspMI	CTAG	6 cut(s)	360, 459, 492, 804, 1473, 1506
StyD4I	CCNGG	3 cut(s)	685, 796, 904
StyI	CCWWGG	1 cut(s)	359
TaiI	ACGT	4 cut(s)	229, 445, 516, 1110
TaqI	TCGA	4 cut(s)	307, 1085, 1211, 1337
TaqII	GACCGA	2 cut(s)	258, 1440
TasI	AATT	8 cut(s)	106, 471, 595, 623, 668, 812, 970, 1328
TatI	WGTACW	2 cut(s)	326, 413
TfiI	GAWTC	8 cut(s)	11, 314, 448, 742, 851, 1303, 1423, 1502
Tru1I	TTAA	7 cut(s)	75, 173, 215, 792, 996, 1478, 1522
Tru9I	TTAA	7 cut(s)	75, 173, 215, 792, 996, 1478, 1522
TscAI	CASTG	1 cut(s)	613
TspDTI	ATGAA	6 cut(s)	158, 306, 523, 825, 1325, 1359
TspGWI	ACGGA	2 cut(s)	82, 353
TspRI	CASTG	1 cut(s)	613
Van91I	CCANNNNNTGG	2 cut(s)	1071, 1271
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	3 cut(s)	650, 800, 1262
XapI	RAATTY	4 cut(s)	106, 471, 595, 668
XbaI	TCTAGA	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1118
XmaJI	CCTAGG	1 cut(s)	359
XspI	CTAG	6 cut(s)	360, 459, 492, 804, 1473, 1506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.