Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

21002678 .. 21012617

Gene Structure 9940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGGAAGAGTCAAATGAAGTTCACTCAGAGGAGAATAAAGCTTCTTCTGATAATAAGAAAAGAGTACTCAAGACACCAGCCCAGCTGATGGCTTTGGAGAAATTTTATAATGAGCACAAGTATCCTACAGAGGAAATGAAATCACAACTCGCAGAGGAGTTAGCATTATCAGAAAAGCAGATCTCTGGTTGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTCTAGAGACGAAACATGTGCTAATGGACGGCAAGATCGCTCAAGTGGTGTTATTCAGGATCGTGCTAGTGGACTTGGGCAAGACTCATGTGGTAGCACTAAACATGGAGATTATAGGTATGTTGATCCTAGGGAGGTCGAAAGTCGGAGGCTTTCTGGGTATGATTTCCCAGCTGCAGATCTCACTCGTGAGAACCGGATTCATTATACAGAAAGAGTTAGCATGGATAATACATCTTCAGAAAGTAGCTCATCTCTACAAGATCGGTTTCATACTCAAACTGAAGATCCATATGATATGGAGACATCCAGATACGTAACTGATAACGGGGTCTTTTCACCGTTAAATTCGAAGGGCACAGAAAACATGGGATATAAGCCCTCAGGGTATTTGAAAGTCAAAGGAGAAATAGAAAATGCTGCTATTACAGCTGTTAAGAGGCAACTTGGGAGGCATTTTCGGGAGGATGGTCCACCATTAGGTGTAGAATTTGATCCACTTCCTCCTGGTGCATTTGAAACCCCGATTATGGATCCAGTGCAAGAACTCTCAGTTGGTGGGGACGCTGCTATTCTTGTTTCCCCGGACACATCCGGGGTAAAAAGGCAATCAAGTCCAAGCACTAGATATGAAGTATATAATTCCAACTTGAGTTCCCATGGTTTGCATATTCACCAGGAAAAACGTGGTATTATGCATGGGGTTGATATGGTGGAGAGGAAACCTCGCAAGCAATTGAGGCAAAAGTCCACTTATCTTAAAGAAACCAATCCTTCTGCTGGAAAAAACTCTTCCTTGGATATGTATGATAAGTTTCCTGGGGGAATGCCTGGTTACAATGGCAATAGGAAGAACAGAATGAGCTCTAAGCATGGCCACCGTGGTAGGAAAATCATTAGTGAGACGACAGAGCCGTGGCCAAATGAGTCTGATAAAGTTTGTAGCCCCAACATTGGCCAAAGGGGCGATTACTTTAAGTCAAAGGCTTCAAATTCTATAGTTAAGCATTCTGAAACTCATGACACAGAGAGAGGACTATATACAATGATCCCACGGGAGGAGAACGTTGATGGAGAATGTAAGGCAGTCAAAGACTATCCACTTAGAGTAACGATGACAGATGAAATGGCGGTTGCAAAACAAGGCAGGGTTAATTTTCCTCAACAAGACTATGCAACAAGTGTGTCGTTTTCTCAAATTCCACAGCGTAAAAATCAGACTAAAGGAACTGCCATGGAGATGCCATCTAGCTTCAGTGAGGATGAAACTGCAGAAACAAACTCTTCCGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

507

Amino Acids

56.98

Weight (kDa)

6.46

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	19 - 74	6.6e-17	Homeodomain
Homeobox_KN	PF05920	39 - 69	1.2e-06	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	88
AciI	CCGC	1 cut(s)	1355
AclI	AACGTT	1 cut(s)	1290
AclWI	GGATC	7 cut(s)	291, 344, 506, 713, 752, 765, 1267
AcoI	YGGCCR	3 cut(s)	1099, 1142, 1180
AcsI	RAATTY	5 cut(s)	101, 571, 713, 1216, 1422
AcuI	CTGAAG	3 cut(s)	447, 528, 1462
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	6 cut(s)	88, 704, 754, 1004, 1178, 1282
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	619, 743, 1215
AjnI	CCWGG	4 cut(s)	730, 900, 1042, 1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	762, 794
AluBI	AGCT	7 cut(s)	41, 85, 398, 474, 656, 1089, 1476
AluI	AGCT	7 cut(s)	41, 85, 398, 474, 656, 1089, 1476
Alw21I	GWGCWC	2 cut(s)	117, 1091
Alw26I	GTCTC	3 cut(s)	225, 521, 1121
AlwI	GGATC	7 cut(s)	291, 344, 506, 713, 752, 765, 1267
AoxI	GGCC	3 cut(s)	1099, 1142, 1180
ApeKI	GCWGC	3 cut(s)	398, 644, 791
ApoI	RAATTY	5 cut(s)	101, 571, 713, 1216, 1422
AspA2I	CCTAGG	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	695
AsuC2I	CCSGG	2 cut(s)	809, 820
AsuHPI	GGTGA	2 cut(s)	555, 890
AsuII	TTCGAA	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	695
AvrII	CCTAGG	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	584
BalI	TGGCCA	3 cut(s)	1101, 1144, 1182
BamHI	GGATCC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	1091
BauI	CACGAG	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	117, 1091
BbvI	GCAGC	3 cut(s)	385, 631, 778
BccI	CCATC	4 cut(s)	82, 686, 1289, 1477
BceAI	ACGGC	2 cut(s)	269, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	4 cut(s)	732, 902, 1044, 1056
BciVI	GTATCC	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	809, 820
BcoDI	GTCTC	3 cut(s)	225, 521, 1121
BfaI	CTAG	5 cut(s)	228, 291, 354, 849, 1473
BfmI	CTRYAG	4 cut(s)	126, 399, 1221, 1494
BfuI	GTATCC	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	1188
BglII	AGATCT	2 cut(s)	180, 403
BisI	GCNGC	3 cut(s)	399, 645, 792
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	3 cut(s)	400, 646, 793
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	6 cut(s)	732, 809, 820, 902, 1044, 1056
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	6 cut(s)	732, 809, 820, 902, 1044, 1056
BmsI	GCATC	1 cut(s)	1455
BplI	GAGNNNNNCTC	2 cut(s)	934, 966
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	53, 250, 895
BpuMI	CCSGG	2 cut(s)	809, 820
BsaAI	YACGTR	1 cut(s)	541
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	6 cut(s)	88, 704, 754, 1004, 1178, 1282
Bse1I	ACTGG	1 cut(s)	761
Bse21I	CCTNAGG	1 cut(s)	607
BseBI	CCWGG	4 cut(s)	732, 902, 1044, 1056
BseGI	GGATG	4 cut(s)	530, 697, 815, 1492
BseLI	CCNNNNNNNGG	6 cut(s)	88, 704, 754, 1004, 1178, 1282
BseMII	CTCAG	3 cut(s)	39, 621, 789
BseNI	ACTGG	1 cut(s)	761
BseRI	GAGGAG	3 cut(s)	44, 170, 1298
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	385, 631, 778
BseYI	CCCAGC	2 cut(s)	81, 394
BshFI	GGCC	3 cut(s)	1101, 1144, 1182
BsiHKAI	GWGCWC	2 cut(s)	117, 1091
BsiSI	CCGG	3 cut(s)	421, 809, 819
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	6 cut(s)	88, 704, 754, 1004, 1178, 1282
BsmAI	GTCTC	3 cut(s)	225, 521, 1121
BsmBI	CGTCTC	2 cut(s)	225, 1121
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	2 cut(s)	1056, 1231
BsnI	GGCC	3 cut(s)	1101, 1144, 1182
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	117, 584, 1091
Bsp19I	CCATGG	2 cut(s)	883, 1458
BspACI	CCGC	1 cut(s)	1355
BspANI	GGCC	3 cut(s)	1101, 1144, 1182
BspCNI	CTCAG	3 cut(s)	38, 620, 788
BspHI	TCATGA	1 cut(s)	1243
BspLI	GGNNCC	1 cut(s)	759
BspMAI	CTGCAG	2 cut(s)	403, 1498
BspPI	GGATC	7 cut(s)	291, 344, 506, 713, 752, 765, 1267
BspT104I	TTCGAA	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	4 cut(s)	353, 883, 1020, 1458
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	4 cut(s)	732, 902, 1044, 1056
Bst4CI	ACNGT	2 cut(s)	567, 1106
Bst6I	CTCTTC	2 cut(s)	1021, 1513
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	956
BstDEI	CTNAG	5 cut(s)	25, 607, 775, 1092, 1328
BstDSI	CCRYGG	5 cut(s)	883, 1105, 1139, 1277, 1458
BstF5I	GGATG	4 cut(s)	530, 697, 815, 1492
BstMAI	GTCTC	3 cut(s)	225, 521, 1121
BstMWI	GCNNNNNNNGC	3 cut(s)	653, 964, 1188
BstNI	CCWGG	4 cut(s)	732, 902, 1044, 1056
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	6 cut(s)	730, 807, 818, 900, 1042, 1054
BstSFI	CTRYAG	4 cut(s)	126, 399, 1221, 1494
BstSLI	GKGCMC	1 cut(s)	584
BstSNI	TACGTA	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	385, 631, 778
BstX2I	RGATCY	4 cut(s)	180, 403, 511, 757
BstYI	RGATCY	4 cut(s)	180, 403, 511, 757
Bsu36I	CCTNAGG	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	1101, 1144, 1182
BtgI	CCRYGG	5 cut(s)	883, 1105, 1139, 1277, 1458
BtsCI	GGATG	4 cut(s)	530, 697, 815, 1492
BtsIMutI	CAGTG	2 cut(s)	768, 1486
Cac8I	GCNNGC	1 cut(s)	956
CciI	TCATGA	1 cut(s)	1243
Cfr13I	GGNCC	1 cut(s)	695
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	65
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	5 cut(s)	25, 607, 775, 1092, 1328
EaeI	YGGCCR	3 cut(s)	1099, 1142, 1180
Eam1104I	CTCTTC	2 cut(s)	1021, 1513
EarI	CTCTTC	2 cut(s)	1021, 1513
Ecl136II	GAGCTC	1 cut(s)	1089
Eco105I	TACGTA	1 cut(s)	541
Eco130I	CCWWGG	4 cut(s)	353, 883, 1020, 1458
Eco24I	GRGCYC	1 cut(s)	1091
Eco47I	GGWCC	1 cut(s)	695
Eco53kI	GAGCTC	1 cut(s)	1089
Eco57I	CTGAAG	3 cut(s)	447, 528, 1462
Eco81I	CCTNAGG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	1089
EcoRII	CCWGG	4 cut(s)	730, 900, 1042, 1054
EcoT14I	CCWWGG	4 cut(s)	353, 883, 1020, 1458
EcoT22I	ATGCAT	1 cut(s)	924
EcoT38I	GRGCYC	1 cut(s)	1091
ErhI	CCWWGG	4 cut(s)	353, 883, 1020, 1458
Esp3I	CGTCTC	2 cut(s)	225, 1121
FaqI	GGGAC	1 cut(s)	800
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	399, 645, 792
FokI	GGATG	4 cut(s)	517, 704, 802, 1499
FriOI	GRGCYC	1 cut(s)	1091
Fsp4HI	GCNGC	3 cut(s)	399, 645, 792
FspBI	CTAG	5 cut(s)	228, 291, 354, 849, 1473
GluI	GCNGC	3 cut(s)	399, 645, 792
GsaI	CCCAGC	2 cut(s)	85, 398
HaeIII	GGCC	3 cut(s)	1101, 1144, 1182
HapII	CCGG	3 cut(s)	421, 809, 819
HgaI	GACGC	1 cut(s)	797
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	4 cut(s)	8, 308, 424, 1151
HpaII	CCGG	3 cut(s)	421, 809, 819
HphI	GGTGA	2 cut(s)	555, 890
Hpy166II	GTNNAC	4 cut(s)	22, 296, 698, 975
Hpy188I	TCNGA	8 cut(s)	28, 49, 172, 372, 466, 1156, 1237, 1443
Hpy188III	TCNNGA	7 cut(s)	70, 228, 281, 413, 534, 686, 1244
Hpy8I	GTNNAC	4 cut(s)	22, 296, 698, 975
HpyAV	CCTTC	3 cut(s)	198, 571, 1008
HpyCH4III	ACNGT	2 cut(s)	567, 1106
HpyCH4IV	ACGT	3 cut(s)	540, 910, 1290
HpyCH4V	TGCA	8 cut(s)	401, 737, 766, 892, 922, 1361, 1400, 1496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	653, 964, 1188
HpyF3I	CTNAG	5 cut(s)	25, 607, 775, 1092, 1328
HpySE526I	ACGT	3 cut(s)	540, 910, 1290
Lsp1109I	GCAGC	3 cut(s)	385, 631, 778
LweI	GCATC	1 cut(s)	1455
MaeI	CTAG	5 cut(s)	228, 291, 354, 849, 1473
MaeII	ACGT	3 cut(s)	540, 910, 1290
MaeIII	GTNAC	3 cut(s)	541, 1058, 1333
MboII	GAAGA	7 cut(s)	17, 36, 453, 521, 1008, 1087, 1500
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	4 cut(s)	180, 403, 511, 757
MhlI	GDGCHC	3 cut(s)	117, 584, 1091
MlsI	TGGCCA	3 cut(s)	1101, 1144, 1182
MluCI	AATT	8 cut(s)	101, 571, 713, 865, 959, 1216, 1378, 1422
MluNI	TGGCCA	3 cut(s)	1101, 1144, 1182
MlyI	GAGTC	3 cut(s)	17, 302, 1160
MmeI	TCCRAC	2 cut(s)	350, 894
Mox20I	TGGCCA	3 cut(s)	1101, 1144, 1182
Mph1103I	ATGCAT	1 cut(s)	924
MscI	TGGCCA	3 cut(s)	1101, 1144, 1182
MseI	TTAA	7 cut(s)	209, 569, 660, 984, 1200, 1227, 1377
MslI	CAYNNNNRTG	1 cut(s)	1463
Msp20I	TGGCCA	3 cut(s)	1101, 1144, 1182
MspA1I	CMGCKG	3 cut(s)	85, 398, 656
MspI	CCGG	3 cut(s)	421, 809, 819
MspR9I	CCNGG	6 cut(s)	732, 809, 820, 902, 1044, 1056
MunI	CAATTG	1 cut(s)	959
Mva1269I	GAATGC	2 cut(s)	1056, 1231
MvaI	CCWGG	4 cut(s)	732, 902, 1044, 1056
MwoI	GCNNNNNNNGC	3 cut(s)	653, 964, 1188
NciI	CCSGG	2 cut(s)	809, 820
NcoI	CCATGG	2 cut(s)	883, 1458
NdeI	CATATG	1 cut(s)	517
NlaIV	GGNNCC	1 cut(s)	759
NsiI	ATGCAT	1 cut(s)	924
NspI	RCATGY	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	575
PagI	TCATGA	1 cut(s)	1243
PciI	ACATGT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	1136
PctI	GAATGC	2 cut(s)	1056, 1231
PfeI	GAWTC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	400, 646, 793
PleI	GAGTC	3 cut(s)	16, 302, 1159
PpsI	GAGTC	3 cut(s)	16, 302, 1159
Ppu21I	YACGTR	1 cut(s)	541
PscI	ACATGT	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	1091
Psp1406I	AACGTT	1 cut(s)	1290
Psp6I	CCWGG	4 cut(s)	730, 900, 1042, 1054
PspFI	CCCAGC	2 cut(s)	81, 394
PspGI	CCWGG	4 cut(s)	730, 900, 1042, 1054
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	695
PstI	CTGCAG	2 cut(s)	403, 1498
PsuI	RGATCY	4 cut(s)	180, 403, 511, 757
PvuII	CAGCTG	3 cut(s)	85, 398, 656
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	1463
SacI	GAGCTC	1 cut(s)	1091
SaqAI	TTAA	7 cut(s)	209, 569, 660, 984, 1200, 1227, 1377
SatI	GCNGC	3 cut(s)	399, 645, 792
Sau96I	GGNCC	1 cut(s)	695
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	3 cut(s)	17, 302, 1160
ScrFI	CCNGG	6 cut(s)	732, 809, 820, 902, 1044, 1056
SduI	GDGCHC	3 cut(s)	117, 584, 1091
SfaNI	GCATC	1 cut(s)	1455
SfcI	CTRYAG	4 cut(s)	126, 399, 1221, 1494
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	1463
SmlI	CTYRAG	3 cut(s)	68, 265, 874
SmoI	CTYRAG	3 cut(s)	68, 265, 874
SnaBI	TACGTA	1 cut(s)	541
Sse9I	AATT	8 cut(s)	101, 571, 713, 865, 959, 1216, 1378, 1422
SsiI	CCGC	1 cut(s)	1355
SspMI	CTAG	5 cut(s)	228, 291, 354, 849, 1473
SstI	GAGCTC	1 cut(s)	1091
StyD4I	CCNGG	6 cut(s)	730, 807, 818, 900, 1042, 1054
StyI	CCWWGG	4 cut(s)	353, 883, 1020, 1458
TaaI	ACNGT	2 cut(s)	567, 1106
TaiI	ACGT	3 cut(s)	543, 913, 1293
TaqI	TCGA	2 cut(s)	363, 575
TasI	AATT	8 cut(s)	101, 571, 713, 865, 959, 1216, 1378, 1422
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	7 cut(s)	209, 569, 660, 984, 1200, 1227, 1377
Tru9I	TTAA	7 cut(s)	209, 569, 660, 984, 1200, 1227, 1377
TscAI	CASTG	2 cut(s)	768, 1486
TseI	GCWGC	3 cut(s)	398, 644, 791
TspDTI	ATGAA	7 cut(s)	30, 152, 416, 485, 870, 1362, 1503
TspGWI	ACGGA	1 cut(s)	1501
TspRI	CASTG	2 cut(s)	768, 1486
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	5 cut(s)	101, 571, 713, 1216, 1422
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	5 cut(s)	228, 291, 354, 849, 1473
ZrmI	AGTACT	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.