Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

25472095 .. 25476927

Gene Structure 4833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1186500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGAACTGCATTCTGAGGAGAATAAAAATTCCCAAGACAATAATAAGAAAAGAAAGCTCAAGACACCGGCCCAACTTATGGCTTTGGAGAAATTTTATAATGCATAAATATCCTACGGAGGAAATGAAATCACAACTTGCAGAGCACTTAAGATTGTCAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTCAAGAGATGAAACACAAGCTAATGGACGGCAAGATCGTTCAAGTGTTGTTATTCAGGATCGAGCTAGTGGACTTGGGCAGGACTCTTGTGGCAGTACTAAACATGGAGAGCATAGGTTTGTTGATCCAAGGGAAGTTGAAAGTCGAAGGCTTTCTGGGCATGATTTCACATCTGCAGATATCACCCGCGAGTATAGGAGTCACTATACAGAAAGAGTTGGTGACATGGATAATACATCTTCAGAAAGTAGCTCGTCTTTACAAGATAGGCTCTTAACTCGAAAGGAGGATCCGTATGATGTGGAAACTTCTAGATATCTAACACATACCAAGGGCATGGAAAACATGGGATATAAGCCCTCGGGGTTTATGAAAGTGAAAGGTGAAGCAGAAAATGCTGCTATTACAGCTGTTAAGAGGCAACTCGGGAGGCAGTATTGGGAGGATGGTCCTCTATTAGGTGTAGAATTTGATTTGCTTCCTCGTGGTGCATTTGAATCCCCGATTATTGGTTCTGGCCATGAACCATCCACTATTGGGAATACTGTCCTCCGTTCTCCTGACATTTCTGGAGTGAAAGGGCAACTAAGTCCAAGCACTAGATATGAAGTATACAACTCCAGGTTGAATTCCCAGCAGGAAAATCCTAGCATCATGCATGGGTTTGATCTTCAGGAGAAGAAATCGAGCAAGCAATTGAGACAAAAGTTGACTTATCACAACGATACCAATTCTTCCCCTGGAAAAAATTCCTCCTTGGATATTTATGATAAACCTTCTGGAGGGATTTCTGCTTATAATAGCAATAAGAAAGATAGAATGAGATCTAAGGGTAACTATGGTAGGAAATTTACTAGTGAACAAACAGAGCCTTGCTTAGATGAGTACAATAAATTTATGAGCCCCAAGATTGTCCAAAGGAATGAGTACTTGAAGTCAAGGCCTTCAAGTTCTATGGAGAAGTTTGACGGAGAATGTAAGGCCATGAAAGGCTATCACAATCCATTTAGAAGAATGAATTCTACAGATGAAATGGCGGTTACAAAACAAGCCAGAGTTAATTTCCCTCAACGAGACTATGGAACAAATTCATTTGCTCAAATGCCACCTCGTAAAAATCAGATCAAAGAAACTGCCATGGAGATGCCATCTAGCTTCAGTGAGGATGAAACTGCAGAAACCAATTCTTCTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

471

Amino Acids

53.95

Weight (kDa)

9.3

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeobox_KN	PF05920	27 - 65	1.5e-07	Homeobox KN domain
Homeodomain	PF00046	29 - 70	1.8e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	98, 1011
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	825
AccII	CGCG	1 cut(s)	402
AciI	CCGC	2 cut(s)	400, 1250
AclWI	GGATC	4 cut(s)	279, 332, 497, 510
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	9 cut(s)	27, 91, 680, 841, 961, 1061, 1106, 1231, 1300
AcuI	CTGAAG	3 cut(s)	438, 869, 1354
AfaI	GTAC	3 cut(s)	310, 1100, 1142
AfiI	CCNNNNNNNGG	5 cut(s)	78, 671, 722, 750, 995
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	6 cut(s)	255, 353, 710, 841, 1147, 1161
AhlI	ACTAGT	1 cut(s)	1067
AjnI	CCWGG	2 cut(s)	833, 952
AluBI	AGCT	6 cut(s)	57, 233, 278, 465, 623, 1368
AluI	AGCT	6 cut(s)	57, 233, 278, 465, 623, 1368
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	907, 1281
AlwI	GGATC	4 cut(s)	279, 332, 497, 510
Ama87I	CYCGRG	2 cut(s)	574, 638
AoxI	GGCC	4 cut(s)	68, 730, 1154, 1194
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	9 cut(s)	27, 91, 680, 841, 961, 1061, 1106, 1231, 1300
Asp700I	GAANNNNTTC	4 cut(s)	364, 961, 1231, 1300
AspS9I	GGNCC	2 cut(s)	69, 662
AsuHPI	GGTGA	3 cut(s)	388, 446, 608
AvaI	CYCGRG	2 cut(s)	574, 638
AvaII	GGWCC	1 cut(s)	662
BalI	TGGCCA	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	1118
BauI	CACGAG	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	4 cut(s)	171, 653, 748, 1369
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	835, 954
BcoDI	GTCTC	2 cut(s)	907, 1281
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	6 cut(s)	279, 525, 813, 861, 1068, 1365
BfmI	CTRYAG	3 cut(s)	387, 1236, 1386
BfrI	CTTAAG	1 cut(s)	148
BglII	AGATCT	1 cut(s)	1037
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
BmcAI	AGTACT	2 cut(s)	310, 1142
Bme1390I	CCNGG	2 cut(s)	835, 954
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	2 cut(s)	574, 638
BmgT120I	GGNCC	2 cut(s)	69, 662
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	2 cut(s)	835, 954
BmsI	GCATC	2 cut(s)	873, 1347
BpmI	CTGGAG	3 cut(s)	804, 817, 1014
BpuEI	CTTGAG	1 cut(s)	43
BsaJI	CCNNGG	6 cut(s)	341, 543, 573, 952, 969, 1350
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 671, 722, 750, 995
Bse118I	RCCGGY	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	835, 954
BseDI	CCNNGG	6 cut(s)	341, 543, 573, 952, 969, 1350
BseGI	GGATG	4 cut(s)	182, 664, 740, 1384
BseLI	CCNNNNNNNGG	5 cut(s)	78, 671, 722, 750, 995
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	598
BseYI	CCCAGC	1 cut(s)	846
Bsh1236I	CGCG	1 cut(s)	402
BshFI	GGCC	4 cut(s)	70, 732, 1156, 1196
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	2 cut(s)	574, 638
BsiSI	CCGG	1 cut(s)	67
BslI	CCNNNNNNNGG	5 cut(s)	78, 671, 722, 750, 995
BsmAI	GTCTC	2 cut(s)	907, 1281
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	4 cut(s)	70, 732, 1156, 1196
BsoBI	CYCGRG	2 cut(s)	574, 638
Bsp1286I	GDGCHC	2 cut(s)	147, 1118
Bsp143I	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
Bsp19I	CCATGG	1 cut(s)	1350
BspACI	CCGC	2 cut(s)	400, 1250
BspANI	GGCC	4 cut(s)	70, 732, 1156, 1196
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	504
BspMAI	CTGCAG	2 cut(s)	391, 1390
BspPI	GGATC	4 cut(s)	279, 332, 497, 510
BspTI	CTTAAG	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	6 cut(s)	341, 543, 573, 952, 969, 1350
BssMI	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
BssNAI	GTATAC	1 cut(s)	826
BssSI	CACGAG	1 cut(s)	696
BssT1I	CCWWGG	4 cut(s)	341, 543, 969, 1350
Bst1107I	GTATAC	1 cut(s)	826
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	835, 954
Bst4CI	ACNGT	1 cut(s)	760
BstAFI	CTTAAG	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	905
BstDEI	CTNAG	4 cut(s)	14, 800, 1041, 1090
BstDSI	CCRYGG	1 cut(s)	1350
BstENI	CCTNNNNNAGG	2 cut(s)	669, 993
BstF5I	GGATG	4 cut(s)	182, 664, 740, 1384
BstFNI	CGCG	1 cut(s)	402
BstKTI	GATC	7 cut(s)	250, 274, 340, 505, 883, 1040, 1338
BstMAI	GTCTC	2 cut(s)	907, 1281
BstMBI	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
BstMWI	GCNNNNNNNGC	3 cut(s)	370, 608, 620
BstNI	CCWGG	2 cut(s)	835, 954
BstSCI	CCNGG	2 cut(s)	833, 952
BstSFI	CTRYAG	3 cut(s)	387, 1236, 1386
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	598
BstX2I	RGATCY	2 cut(s)	502, 1037
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	502, 1037
BstZ17I	GTATAC	1 cut(s)	826
BsuRI	GGCC	4 cut(s)	70, 732, 1156, 1196
BtgI	CCRYGG	1 cut(s)	1350
BtsCI	GGATG	4 cut(s)	182, 664, 740, 1384
BtsIMutI	CAGTG	1 cut(s)	1378
Cac8I	GCNNGC	1 cut(s)	905
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	69, 662
Csp6I	GTAC	3 cut(s)	309, 1099, 1141
CviQI	GTAC	3 cut(s)	309, 1099, 1141
DdeI	CTNAG	4 cut(s)	14, 800, 1041, 1090
DpnI	GATC	7 cut(s)	249, 273, 339, 504, 882, 1039, 1337
DpnII	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
EaeI	YGGCCR	1 cut(s)	730
Eco130I	CCWWGG	4 cut(s)	341, 543, 969, 1350
Eco147I	AGGCCT	1 cut(s)	1156
Eco24I	GRGCYC	1 cut(s)	1118
Eco32I	GATATC	3 cut(s)	171, 394, 530
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	3 cut(s)	438, 869, 1354
Eco88I	CYCGRG	2 cut(s)	574, 638
EcoNI	CCTNNNNNAGG	2 cut(s)	669, 993
EcoRI	GAATTC	2 cut(s)	841, 1231
EcoRII	CCWGG	2 cut(s)	833, 952
EcoRV	GATATC	3 cut(s)	171, 394, 530
EcoT14I	CCWWGG	4 cut(s)	341, 543, 969, 1350
EcoT22I	ATGCAT	2 cut(s)	105, 873
EcoT38I	GRGCYC	1 cut(s)	1118
ErhI	CCWWGG	4 cut(s)	341, 543, 969, 1350
FauI	CCCGC	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	4 cut(s)	189, 671, 727, 1391
FriOI	GRGCYC	1 cut(s)	1118
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	6 cut(s)	279, 525, 813, 861, 1068, 1365
GluI	GCNGC	1 cut(s)	612
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	3 cut(s)	804, 817, 1014
HaeIII	GGCC	4 cut(s)	70, 732, 1156, 1196
HapII	CCGG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	924
HindII	GTYRAC	1 cut(s)	924
HinfI	GANTC	3 cut(s)	296, 412, 710
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	3 cut(s)	388, 446, 608
Hpy166II	GTNNAC	4 cut(s)	284, 826, 924, 1073
Hpy188I	TCNGA	4 cut(s)	15, 160, 457, 1335
Hpy8I	GTNNAC	4 cut(s)	284, 826, 924, 1073
HpyAV	CCTTC	4 cut(s)	186, 354, 999, 1167
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	7 cut(s)	9, 103, 140, 389, 704, 871, 1388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	370, 608, 620
HpyF3I	CTNAG	4 cut(s)	14, 800, 1041, 1090
Kzo9I	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	2 cut(s)	873, 1347
MaeI	CTAG	6 cut(s)	279, 525, 813, 861, 1068, 1365
MaeIII	GTNAC	4 cut(s)	413, 434, 1046, 1252
MalI	GATC	7 cut(s)	249, 273, 339, 504, 882, 1039, 1337
MboI	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
MboII	GAAGA	6 cut(s)	444, 875, 904, 939, 1236, 1392
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	2 cut(s)	502, 1037
MhlI	GDGCHC	2 cut(s)	147, 1118
MlsI	TGGCCA	1 cut(s)	732
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	2 cut(s)	290, 421
Mox20I	TGGCCA	1 cut(s)	732
Mph1103I	ATGCAT	2 cut(s)	105, 873
MroXI	GAANNNNTTC	4 cut(s)	364, 961, 1231, 1300
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	5 cut(s)	149, 197, 488, 627, 1272
MslI	CAYNNNNRTG	1 cut(s)	1355
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	148
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	835, 954
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	835, 954
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	370, 608, 620
NcoI	CCATGG	1 cut(s)	1350
NdeII	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	2 cut(s)	413, 434
NsiI	ATGCAT	2 cut(s)	105, 873
PceI	AGGCCT	1 cut(s)	1156
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PctI	GAATGC	1 cut(s)	9
PdmI	GAANNNNTTC	4 cut(s)	364, 961, 1231, 1300
PfeI	GAWTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	2 cut(s)	290, 420
PpsI	GAGTC	2 cut(s)	290, 420
PsiI	TTATAA	2 cut(s)	98, 1011
Psp6I	CCWGG	2 cut(s)	833, 952
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	833, 952
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	69, 662
PstI	CTGCAG	2 cut(s)	391, 1390
PsuI	RGATCY	2 cut(s)	502, 1037
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	3 cut(s)	310, 1100, 1142
RsaNI	GTAC	3 cut(s)	309, 1099, 1141
RseI	CAYNNNNRTG	1 cut(s)	1355
SaqAI	TTAA	5 cut(s)	149, 197, 488, 627, 1272
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	7 cut(s)	247, 271, 337, 502, 880, 1037, 1335
Sau96I	GGNCC	2 cut(s)	69, 662
ScaI	AGTACT	2 cut(s)	310, 1142
SchI	GAGTC	2 cut(s)	290, 421
ScrFI	CCNGG	2 cut(s)	835, 954
SduI	GDGCHC	2 cut(s)	147, 1118
SfaNI	GCATC	2 cut(s)	873, 1347
SfcI	CTRYAG	3 cut(s)	387, 1236, 1386
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	1355
SmlI	CTYRAG	2 cut(s)	58, 148
SmoI	CTYRAG	2 cut(s)	58, 148
SpeI	ACTAGT	1 cut(s)	1067
SseBI	AGGCCT	1 cut(s)	1156
SsiI	CCGC	2 cut(s)	400, 1250
SspMI	CTAG	6 cut(s)	279, 525, 813, 861, 1068, 1365
StuI	AGGCCT	1 cut(s)	1156
StyD4I	CCNGG	2 cut(s)	833, 952
StyI	CCWWGG	4 cut(s)	341, 543, 969, 1350
TaaI	ACNGT	1 cut(s)	760
TaqI	TCGA	4 cut(s)	274, 358, 493, 899
TatI	WGTACW	3 cut(s)	308, 1098, 1140
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	5 cut(s)	149, 197, 488, 627, 1272
Tru9I	TTAA	5 cut(s)	149, 197, 488, 627, 1272
TscAI	CASTG	1 cut(s)	1378
TseFI	GTSAC	2 cut(s)	413, 434
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	2 cut(s)	413, 434
TspGWI	ACGGA	4 cut(s)	131, 495, 755, 1197
TspRI	CASTG	1 cut(s)	1378
Van91I	CCANNNNNTGG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	662
XagI	CCTNNNNNAGG	2 cut(s)	669, 993
XapI	RAATTY	9 cut(s)	27, 91, 680, 841, 961, 1061, 1106, 1231, 1300
XbaI	TCTAGA	1 cut(s)	524
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1402
XmiI	GTMKAC	1 cut(s)	825
XmnI	GAANNNNTTC	4 cut(s)	364, 961, 1231, 1300
XspI	CTAG	6 cut(s)	279, 525, 813, 861, 1068, 1365
ZrmI	AGTACT	2 cut(s)	310, 1142
Zsp2I	ATGCAT	2 cut(s)	105, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.