Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

20168489 .. 20180182

Gene Structure 11694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G267700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGAAGAATCAAATGAACTGCATTCTGAGGAGAATAAAACTTCCCAAGATAATAATAAGAAAAGAAAGCTGAAGACACCAGCCCAGCTTATGGCTTTAGAGAAATTTTATAATGAACATAAATACCCTACAGAGGAAATGAAATCACAAGTTGCGGAACAGTTAGGATTGTCAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTCAAGAGATGAAACTTGTGCTAATGGACGGCAAGATCGTTCAAGTGGTGTTATTCAGGATCGAGCTAGTGGACTTGGGCAAGACTCATGTGGCAGCACTAAACATGGAGATCATAGGTATGTTGATCCAAGGGAGGTTGAAAGTCGAAGGCTTTCTGGGCATGATTTCCCAGCTGCAGATATTACCCGTGAGTATAGGAGTCACTATACCGAAAGAGTTGGTGGCATGGATAATACATCTTCAGAAAGTAGCTCGTCTTTACAAGATAGGTTCTTTACTCAAAATGACGATCCGTATGATGTGGAAACTTCTAGATACCTAGCGCATAATGGAGTCTTTTCACCCATAAATTCCAGGGCCACAGAGAACATGGCATATAAGCCCTCAGGGTATTTGAAAGTGAAAGGTGAAGCAGAAAATGCTGCTATTACAGCTGTTAAGAGGCAACTTGGGAGGCATTATCAGGAGGATGGTCCCCCATTAGGTGTAGAATTTGATTTGCTTCCTCCTGGTGCATTTGAATCCCCGATTATGGATTCAGTCCATGAACCATCCATTGTTGGGAATCCTGTCCTCCGTTCTCCTGACATTTCTGGAGTGAAAGGGCAACTTAGTCCAAGAACTAGATATGAAGTATACAATTCCAAGTTCAGTTCCCAGGATTCGTATATACAGCAGGAAAATCCTTGCATTATGCATGGGTTTGATCTTCAGGAGAAGAAATCTAGCAAAAAATTGAGACAAAAGTCAACTTATCTCAACCACACAAATTCTTCTCCTGGAAAAAACTCTTCCTTGGATATTTATGATAAATCTGTTGGCGGAACCTCTGCTTATAATACCAATAGGAAAGATAAAATGAGATCTAAGCGGGGTTACTCTGGTAGGAAAGTTACTAGTGAACAAACAGAGCCTTGTTTACATGAGTATGATAGAGTTAGTAGCCCCAAGCTTGTCCAAAGGAGTGATTATTTGAAGCCAAAGCCTTCGAGTTCTATAGAGGAGAACCTTGATGGAGAATGCAAGGCCATGAAAGTCTATAGCAATCCACTTAGAGTAATGATGAACTCTACTGATGAAATGGTGGTTGCAAAACAAGCCAGAGTTAATCTCCCTCAGCGAGATTATTCGACAAATTCGTTTCCTCAACTGCCACCTCGTAAAAATCAGATTAAAGGAACTGCTATGGAGATGCCATCTAGCTTCAGTGAGGATGAAACTGCAGAAACCAATTCTTCTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

492

Amino Acids

55.48

Weight (kDa)

7.64

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	111, 1065
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	864
AciI	CCGC	3 cut(s)	155, 1050, 1099
AclWI	GGATC	3 cut(s)	294, 347, 512
AcsI	RAATTY	5 cut(s)	104, 577, 719, 997, 1363
AcuI	CTGAAG	4 cut(s)	92, 453, 923, 1417
AfiI	CCNNNNNNNGG	5 cut(s)	91, 133, 710, 760, 789
AgsI	TTSAA	5 cut(s)	270, 368, 625, 749, 1204
AhlI	ACTAGT	1 cut(s)	1124
AjnI	CCWGG	4 cut(s)	581, 736, 885, 1006
AluBI	AGCT	8 cut(s)	70, 88, 293, 401, 480, 662, 1180, 1431
AluI	AGCT	8 cut(s)	70, 88, 293, 401, 480, 662, 1180, 1431
Alw26I	GTCTC	1 cut(s)	961
AlwI	GGATC	3 cut(s)	294, 347, 512
AoxI	GGCC	2 cut(s)	585, 1254
ApeKI	GCWGC	3 cut(s)	321, 401, 650
ApoI	RAATTY	5 cut(s)	104, 577, 719, 997, 1363
Asp700I	GAANNNNTTC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	585, 701
AsuHPI	GGTGA	2 cut(s)	561, 647
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	1344
BbvI	GCAGC	3 cut(s)	333, 388, 637
BccI	CCATC	5 cut(s)	186, 692, 787, 1235, 1432
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	4 cut(s)	583, 738, 887, 1008
BcoDI	GTCTC	1 cut(s)	961
BcuI	ACTAGT	1 cut(s)	1124
BfaI	CTAG	7 cut(s)	294, 540, 548, 852, 954, 1125, 1428
BfmI	CTRYAG	5 cut(s)	129, 402, 1224, 1267, 1449
BglII	AGATCT	1 cut(s)	1091
BisI	GCNGC	3 cut(s)	322, 402, 651
BlsI	GCNGC	3 cut(s)	323, 403, 652
Bme1390I	CCNGG	4 cut(s)	583, 738, 887, 1008
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	585, 701
BmiI	GGNNCC	2 cut(s)	703, 1054
BmrFI	CCNGG	4 cut(s)	583, 738, 887, 1008
BmsI	GCATC	1 cut(s)	1410
BoxI	GACNNNNGTC	1 cut(s)	973
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	1323, 1355
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	1 cut(s)	1344
BsaJI	CCNNGG	4 cut(s)	356, 582, 885, 1023
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 133, 710, 760, 789
Bse21I	CCTNAGG	1 cut(s)	613
BseBI	CCWGG	4 cut(s)	583, 738, 887, 1008
BseDI	CCNNGG	4 cut(s)	356, 582, 885, 1023
BseGI	GGATG	4 cut(s)	197, 703, 779, 1447
BseLI	CCNNNNNNNGG	5 cut(s)	91, 133, 710, 760, 789
BseMII	CTCAG	3 cut(s)	18, 627, 1358
BseRI	GAGGAG	2 cut(s)	44, 1244
BseXI	GCAGC	3 cut(s)	333, 388, 637
BseYI	CCCAGC	2 cut(s)	84, 397
BshFI	GGCC	2 cut(s)	587, 1256
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	5 cut(s)	91, 133, 710, 760, 789
BsmAI	GTCTC	1 cut(s)	961
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	2 cut(s)	22, 1253
BsnI	GGCC	2 cut(s)	587, 1256
Bsp143I	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
BspACI	CCGC	3 cut(s)	155, 1050, 1099
BspANI	GGCC	2 cut(s)	587, 1256
BspCNI	CTCAG	3 cut(s)	19, 626, 1357
BspLI	GGNNCC	2 cut(s)	703, 1054
BspMAI	CTGCAG	2 cut(s)	406, 1453
BspPI	GGATC	3 cut(s)	294, 347, 512
BssECI	CCNNGG	4 cut(s)	356, 582, 885, 1023
BssMI	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
BssNAI	GTATAC	1 cut(s)	865
BssT1I	CCWWGG	2 cut(s)	356, 1023
Bst1107I	GTATAC	1 cut(s)	865
Bst2UI	CCWGG	4 cut(s)	583, 738, 887, 1008
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	1024
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstDEI	CTNAG	6 cut(s)	27, 613, 839, 1095, 1280, 1344
BstF5I	GGATG	4 cut(s)	197, 703, 779, 1447
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	7 cut(s)	265, 289, 340, 355, 520, 937, 1094
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
BstMWI	GCNNNNNNNGC	4 cut(s)	385, 647, 659, 1325
BstNI	CCWGG	4 cut(s)	583, 738, 887, 1008
BstPAI	GACNNNNGTC	1 cut(s)	973
BstSCI	CCNGG	4 cut(s)	581, 736, 885, 1006
BstSFI	CTRYAG	5 cut(s)	129, 402, 1224, 1267, 1449
BstV1I	GCAGC	3 cut(s)	333, 388, 637
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
BstZ17I	GTATAC	1 cut(s)	865
Bsu36I	CCTNAGG	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	587, 1256
BtsCI	GGATG	4 cut(s)	197, 703, 779, 1447
BtsIMutI	CAGTG	1 cut(s)	1441
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	585, 701
CviAII	CATG	9 cut(s)	315, 332, 389, 454, 598, 773, 926, 1151, 1258
DdeI	CTNAG	6 cut(s)	27, 613, 839, 1095, 1280, 1344
DpnI	GATC	7 cut(s)	264, 288, 339, 354, 519, 936, 1093
DpnII	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
Eam1104I	CTCTTC	1 cut(s)	1024
EarI	CTCTTC	1 cut(s)	1024
EciI	GGCGGA	1 cut(s)	1065
Eco130I	CCWWGG	2 cut(s)	356, 1023
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	4 cut(s)	92, 453, 923, 1417
Eco81I	CCTNAGG	1 cut(s)	613
EcoRII	CCWGG	4 cut(s)	581, 736, 885, 1006
EcoRV	GATATC	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	356, 1023
EcoT22I	ATGCAT	1 cut(s)	927
ErhI	CCWWGG	2 cut(s)	356, 1023
FaeI	CATG	9 cut(s)	318, 335, 392, 457, 601, 776, 929, 1154, 1261
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	9 cut(s)	314, 331, 388, 453, 597, 772, 925, 1150, 1257
FauI	CCCGC	1 cut(s)	1092
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	3 cut(s)	322, 402, 651
FokI	GGATG	4 cut(s)	204, 710, 766, 1454
Fsp4HI	GCNGC	3 cut(s)	322, 402, 651
FspBI	CTAG	7 cut(s)	294, 540, 548, 852, 954, 1125, 1428
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	3 cut(s)	322, 402, 651
GsaI	CCCAGC	2 cut(s)	88, 401
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	587, 1256
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	9 cut(s)	318, 335, 392, 457, 601, 776, 929, 1154, 1261
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HindIII	AAGCTT	1 cut(s)	1178
HinfI	GANTC	8 cut(s)	8, 311, 427, 561, 749, 764, 793, 890
HphI	GGTGA	2 cut(s)	561, 647
Hpy166II	GTNNAC	5 cut(s)	299, 865, 978, 1130, 1148
Hpy188I	TCNGA	4 cut(s)	28, 175, 472, 1398
Hpy188III	TCNNGA	8 cut(s)	189, 231, 284, 540, 692, 812, 822, 941
Hpy8I	GTNNAC	5 cut(s)	299, 865, 978, 1130, 1148
HpyAV	CCTTC	3 cut(s)	201, 369, 1224
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	8 cut(s)	22, 404, 743, 918, 925, 1251, 1319, 1451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	385, 647, 659, 1325
HpyF3I	CTNAG	6 cut(s)	27, 613, 839, 1095, 1280, 1344
Hsp92II	CATG	9 cut(s)	318, 335, 392, 457, 601, 776, 929, 1154, 1261
HspAI	GCGC	1 cut(s)	551
Kzo9I	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
Lsp1109I	GCAGC	3 cut(s)	333, 388, 637
LweI	GCATC	1 cut(s)	1410
MaeI	CTAG	7 cut(s)	294, 540, 548, 852, 954, 1125, 1428
MaeIII	GTNAC	3 cut(s)	428, 1103, 1120
MalI	GATC	7 cut(s)	264, 288, 339, 354, 519, 936, 1093
MboI	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
MboII	GAAGA	8 cut(s)	17, 85, 459, 929, 958, 993, 1011, 1455
MflI	RGATCY	1 cut(s)	1091
MluCI	AATT	8 cut(s)	104, 577, 719, 868, 962, 997, 1363, 1459
MlyI	GAGTC	3 cut(s)	305, 436, 570
Mph1103I	ATGCAT	1 cut(s)	927
MroXI	GAANNNNTTC	1 cut(s)	379
MseI	TTAA	4 cut(s)	212, 666, 1335, 1401
MslI	CAYNNNNRTG	2 cut(s)	345, 1155
MspA1I	CMGCKG	2 cut(s)	401, 662
MspR9I	CCNGG	4 cut(s)	583, 738, 887, 1008
Mva1269I	GAATGC	2 cut(s)	22, 1253
MvaI	CCWGG	4 cut(s)	583, 738, 887, 1008
MwoI	GCNNNNNNNGC	4 cut(s)	385, 647, 659, 1325
NdeII	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
NlaIII	CATG	9 cut(s)	318, 335, 392, 457, 601, 776, 929, 1154, 1261
NlaIV	GGNNCC	2 cut(s)	703, 1054
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	927
PcsI	WCGNNNNNNNCGW	2 cut(s)	262, 1364
PctI	GAATGC	2 cut(s)	22, 1253
PdmI	GAANNNNTTC	1 cut(s)	379
PfeI	GAWTC	5 cut(s)	8, 749, 764, 793, 890
PflMI	CCANNNNNTGG	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	1006
PkrI	GCNGC	3 cut(s)	323, 403, 652
PleI	GAGTC	3 cut(s)	305, 435, 569
PpsI	GAGTC	3 cut(s)	305, 435, 569
PshAI	GACNNNNGTC	1 cut(s)	973
PsiI	TTATAA	2 cut(s)	111, 1065
Psp6I	CCWGG	4 cut(s)	581, 736, 885, 1006
PspFI	CCCAGC	2 cut(s)	84, 397
PspGI	CCWGG	4 cut(s)	581, 736, 885, 1006
PspN4I	GGNNCC	2 cut(s)	703, 1054
PspPI	GGNCC	2 cut(s)	585, 701
PstI	CTGCAG	2 cut(s)	406, 1453
PsuI	RGATCY	1 cut(s)	1091
PvuII	CAGCTG	2 cut(s)	401, 662
RseI	CAYNNNNRTG	2 cut(s)	345, 1155
SaqAI	TTAA	4 cut(s)	212, 666, 1335, 1401
SatI	GCNGC	3 cut(s)	322, 402, 651
Sau3AI	GATC	7 cut(s)	262, 286, 337, 352, 517, 934, 1091
Sau96I	GGNCC	2 cut(s)	585, 701
SchI	GAGTC	3 cut(s)	305, 436, 570
ScrFI	CCNGG	4 cut(s)	583, 738, 887, 1008
SfaNI	GCATC	1 cut(s)	1410
SfcI	CTRYAG	5 cut(s)	129, 402, 1224, 1267, 1449
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	2 cut(s)	345, 1155
SpeI	ACTAGT	1 cut(s)	1124
Sse9I	AATT	8 cut(s)	104, 577, 719, 868, 962, 997, 1363, 1459
SsiI	CCGC	3 cut(s)	155, 1050, 1099
SspMI	CTAG	7 cut(s)	294, 540, 548, 852, 954, 1125, 1428
StyD4I	CCNGG	4 cut(s)	581, 736, 885, 1006
StyI	CCWWGG	2 cut(s)	356, 1023
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	289, 373, 1217, 1358
TasI	AATT	8 cut(s)	104, 577, 719, 868, 962, 997, 1363, 1459
TfiI	GAWTC	5 cut(s)	8, 749, 764, 793, 890
Tru1I	TTAA	4 cut(s)	212, 666, 1335, 1401
Tru9I	TTAA	4 cut(s)	212, 666, 1335, 1401
TscAI	CASTG	1 cut(s)	1441
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	3 cut(s)	321, 401, 650
Tsp45I	GTSAC	1 cut(s)	428
TspGWI	ACGGA	2 cut(s)	510, 794
TspRI	CASTG	1 cut(s)	1441
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	5 cut(s)	104, 577, 719, 997, 1363
XbaI	TCTAGA	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	2 cut(s)	595, 1465
XmiI	GTMKAC	1 cut(s)	864
XmnI	GAANNNNTTC	1 cut(s)	379
XspI	CTAG	7 cut(s)	294, 540, 548, 852, 954, 1125, 1428
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.