pycom11g16120

Homeobox KN domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
17510092 .. 17515537
5446 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16120.5

Sequence Viewer

Length: 1449 bp
ATGTGTCTTACTCGTGCTGAGAGGAGAATTTGGGCTATTCAGGAATCAAATGAACTGCATTCTGAGGAGAATAAAAATTCCCAAGACAATAATAAGAAAAGAAAGCTCAAGACACCGGCCCAGCTTATGGCTTTGGAGAAATTTTATAATGAGCATAAATATCCTACGGAAGAAATGAAATCACAACTTGCAGAGCAGTTAAGATTGTCAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTTGAGAGATGAAACACAAGCTAATGGACGGCAAGATCGTTCAAGTGTTGTCATTCAGGATCGAGCTAGTGGACTTGGGCAGGACTCTTGTGGCAGCACTAAACATGGAGAGCATAGGTTTGTTGATCCAAGGGAAGTTGAAAGTCGAAGGCTTTCTGGGCATGATTTCACAGCTGCAGATATCCCCCGCGAGTATAGGAGTCACTATACAGAAAGAATTGGTTACATGGATAATACATCTTCAGAAAGTAGCTCATCTTTACAAGATAGGCTCTTGACTCGAAAGGAGGATCCGTATGATGTGGAAACTTCTAGATATCGAACACATACCAAGGGCATGGAAAACATGGGATATAAGCCCTCGGGGTTTTTGAAAGTAAAAGGTGAAGCAGAAAATGCTGCTATTACAGCTGTTAAGAGGCAACTCGGGAGGCAATATTGGGAGGATGGTCCTCTATTAGGTGTAGAATTTGATTTGCTTCCTCCTGGTGCATTTGAATCCCCGATTATTGGTTCCAGCCACGGTTCTTGCAGACTAGTCTTATACTTCTGTTTTGTTCATTGCTGCGCAGAACCATCCACTATTGGGAATACTGTCCTCCGTTCTCCTGACATTTCTGGAGTGAAAGGGCAACTAAGTCCAAGCACTAGATATGAAGTATACAACTCCAGGTTGAATTCCCAGCAGGAAAATCCTAGCATCATGCATGGGTTTGATCTTCAGGAGAAGAAATCGGGCAAGCAATTGAGACAAAAGTTGACTTATCTCAACGATACCAATTCTTCCCCCGGAAAAAATTCCTCCTTGGATATTTATGATAAACCTTCTGGAGGGATTTCTGCTTATAATAGCAATAAGAAAGATAGAATGAGATCTAAGGGTAACTATGGTAGGAAATTTACTAGTGAACAAACAGAGCCTTGCTTAGATGAGTATGATAAATTTATGAGCCCCAAGATTGTCCAAAGGAATGAGTACTTGAAGTCAAGGCCTTCAAGTTCTATGGTTGAGCATTCTGAGACCGTTACAAAACAAGCCAGAGTTAATTTCCCTCACCGAGACTATGGAACAAATTCATTTGCTCAAATGCCACCTCGTAAAAATCAGATCAAAGGAACTGCCATGGAGATGCCATCTAGCTTCAGTGAGGATGAAACTGCAGAAACCAATTCTTCTGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

55.02

Weight (kDa)

8.77

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 147, 1110
Acc16I TGCGCA 1 cut(s) 832
AccB7I CCANNNNNTGG 1 cut(s) 127
AccI GTMKAC 1 cut(s) 924
AccII CGCG 1 cut(s) 453
AciI CCGC 1 cut(s) 451
AclWI GGATC 4 cut(s) 330, 383, 548, 561
AcsI RAATTY 9 cut(s) 27, 76, 140, 731, 940, 1060, 1160, 1205, 1336
AcuI CTGAAG 3 cut(s) 489, 968, 1390
AfaI GTAC 1 cut(s) 1241
AfiI CCNNNNNNNGG 5 cut(s) 127, 722, 773, 849, 1094
AgsI TTSAA 7 cut(s) 306, 404, 637, 761, 940, 1246, 1260
AhlI ACTAGT 2 cut(s) 799, 1166
AjnI CCWGG 2 cut(s) 748, 932
AluBI AGCT 8 cut(s) 106, 124, 284, 329, 437, 516, 674, 1404
AluI AGCT 8 cut(s) 106, 124, 284, 329, 437, 516, 674, 1404
Alw26I GTCTC 3 cut(s) 1006, 1277, 1317
AlwI GGATC 4 cut(s) 330, 383, 548, 561
Ama87I CYCGRG 2 cut(s) 625, 689
AoxI GGCC 2 cut(s) 117, 1253
ApeKI GCWGC 4 cut(s) 357, 437, 662, 828
ApoI RAATTY 9 cut(s) 27, 76, 140, 731, 940, 1060, 1160, 1205, 1336
Asp700I GAANNNNTTC 3 cut(s) 415, 1060, 1336
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 2 cut(s) 118, 713
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 2 cut(s) 659, 1310
AvaI CYCGRG 2 cut(s) 625, 689
AvaII GGWCC 1 cut(s) 713
BamHI GGATCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 1217
BauI CACGAG 1 cut(s) 12
BbvI GCAGC 4 cut(s) 369, 424, 649, 815
BccI CCATC 4 cut(s) 222, 704, 847, 1405
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 750, 934
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 3 cut(s) 1006, 1277, 1317
BcuI ACTAGT 2 cut(s) 799, 1166
BfaI CTAG 7 cut(s) 330, 576, 800, 912, 960, 1167, 1401
BfmI CTRYAG 2 cut(s) 438, 1422
BglII AGATCT 1 cut(s) 1136
BisI GCNGC 4 cut(s) 358, 438, 663, 829
BlsI GCNGC 4 cut(s) 359, 439, 664, 830
BmcAI AGTACT 1 cut(s) 1241
Bme1390I CCNGG 3 cut(s) 750, 934, 1053
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 2 cut(s) 625, 689
BmgT120I GGNCC 2 cut(s) 118, 713
BmiI GGNNCC 2 cut(s) 555, 778
BmrFI CCNGG 3 cut(s) 750, 934, 1053
BmsI GCATC 2 cut(s) 972, 1383
BpmI CTGGAG 3 cut(s) 903, 916, 1113
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 1277
BsaJI CCNNGG 7 cut(s) 392, 594, 624, 784, 1051, 1068, 1386
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 722, 773, 849, 1094
Bse118I RCCGGY 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 823
BseBI CCWGG 2 cut(s) 750, 934
BseDI CCNNGG 7 cut(s) 392, 594, 624, 784, 1051, 1068, 1386
BseGI GGATG 4 cut(s) 233, 715, 839, 1420
BseLI CCNNNNNNNGG 5 cut(s) 127, 722, 773, 849, 1094
BseMI GCAATG 1 cut(s) 823
BseMII CTCAG 3 cut(s) 9, 54, 1272
BseRI GAGGAG 2 cut(s) 37, 80
BseXI GCAGC 4 cut(s) 369, 424, 649, 815
BseYI CCCAGC 2 cut(s) 120, 945
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 2 cut(s) 119, 1255
BsiHKCI CYCGRG 2 cut(s) 625, 689
BsiSI CCGG 2 cut(s) 116, 1053
BslI CCNNNNNNNGG 5 cut(s) 127, 722, 773, 849, 1094
BsmAI GTCTC 3 cut(s) 1006, 1277, 1317
BsmI GAATGC 2 cut(s) 58, 1276
BsnI GGCC 2 cut(s) 119, 1255
Bso31I GGTCTC 1 cut(s) 1277
BsoBI CYCGRG 2 cut(s) 625, 689
Bsp1286I GDGCHC 1 cut(s) 1217
Bsp143I GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
Bsp19I CCATGG 1 cut(s) 1386
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 119, 1255
BspCNI CTCAG 3 cut(s) 10, 55, 1273
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 555, 778
BspMAI CTGCAG 2 cut(s) 442, 1426
BspPI GGATC 4 cut(s) 330, 383, 548, 561
BspTNI GGTCTC 1 cut(s) 1277
BsrDI GCAATG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 7 cut(s) 392, 594, 624, 784, 1051, 1068, 1386
BssMI GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
BssNAI GTATAC 1 cut(s) 925
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 4 cut(s) 392, 594, 1068, 1386
Bst1107I GTATAC 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 750, 934
Bst4CI ACNGT 3 cut(s) 788, 859, 1288
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 1004
BstDEI CTNAG 6 cut(s) 18, 63, 899, 1140, 1189, 1281
BstDSI CCRYGG 2 cut(s) 784, 1386
BstENI CCTNNNNNAGG 2 cut(s) 720, 1092
BstF5I GGATG 4 cut(s) 233, 715, 839, 1420
BstFNI CGCG 1 cut(s) 453
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 7 cut(s) 301, 325, 391, 556, 982, 1139, 1374
BstMAI GTCTC 3 cut(s) 1006, 1277, 1317
BstMBI GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
BstMWI GCNNNNNNNGC 3 cut(s) 421, 659, 671
BstNI CCWGG 2 cut(s) 750, 934
BstSCI CCNGG 3 cut(s) 748, 932, 1051
BstSFI CTRYAG 2 cut(s) 438, 1422
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 4 cut(s) 369, 424, 649, 815
BstX2I RGATCY 2 cut(s) 553, 1136
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 2 cut(s) 553, 1136
BstZ17I GTATAC 1 cut(s) 925
BsuRI GGCC 2 cut(s) 119, 1255
BtgI CCRYGG 2 cut(s) 784, 1386
BtsCI GGATG 4 cut(s) 233, 715, 839, 1420
BtsIMutI CAGTG 1 cut(s) 1414
Cac8I GCNNGC 1 cut(s) 1004
CfoI GCGC 1 cut(s) 833
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 118, 713
Csp6I GTAC 1 cut(s) 1240
CspCI CAANNNNNGTGG 2 cut(s) 773, 808
CviAII CATG 8 cut(s) 368, 425, 490, 601, 610, 967, 971, 1387
CviQI GTAC 1 cut(s) 1240
DdeI CTNAG 6 cut(s) 18, 63, 899, 1140, 1189, 1281
DpnI GATC 7 cut(s) 300, 324, 390, 555, 981, 1138, 1373
DpnII GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
Eco130I CCWWGG 4 cut(s) 392, 594, 1068, 1386
Eco147I AGGCCT 1 cut(s) 1255
Eco24I GRGCYC 1 cut(s) 1217
Eco31I GGTCTC 1 cut(s) 1277
Eco32I GATATC 3 cut(s) 222, 445, 581
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 3 cut(s) 489, 968, 1390
Eco88I CYCGRG 2 cut(s) 625, 689
EcoNI CCTNNNNNAGG 2 cut(s) 720, 1092
EcoRI GAATTC 1 cut(s) 940
EcoRII CCWGG 2 cut(s) 748, 932
EcoRV GATATC 3 cut(s) 222, 445, 581
EcoT14I CCWWGG 4 cut(s) 392, 594, 1068, 1386
EcoT22I ATGCAT 1 cut(s) 972
EcoT38I GRGCYC 1 cut(s) 1217
ErhI CCWWGG 4 cut(s) 392, 594, 1068, 1386
FaeI CATG 8 cut(s) 371, 428, 493, 604, 613, 970, 974, 1390
FatI CATG 8 cut(s) 367, 424, 489, 600, 609, 966, 970, 1386
FauI CCCGC 1 cut(s) 458
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 4 cut(s) 358, 438, 663, 829
FokI GGATG 4 cut(s) 240, 722, 826, 1427
FriOI GRGCYC 1 cut(s) 1217
Fsp4HI GCNGC 4 cut(s) 358, 438, 663, 829
FspBI CTAG 7 cut(s) 330, 576, 800, 912, 960, 1167, 1401
FspI TGCGCA 1 cut(s) 832
GlaI GCGC 1 cut(s) 832
GluI GCNGC 4 cut(s) 358, 438, 663, 829
GsaI CCCAGC 2 cut(s) 124, 949
GsuI CTGGAG 3 cut(s) 903, 916, 1113
HaeIII GGCC 2 cut(s) 119, 1255
HapII CCGG 2 cut(s) 116, 1053
HhaI GCGC 1 cut(s) 833
Hin1II CATG 8 cut(s) 371, 428, 493, 604, 613, 970, 974, 1390
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HinfI GANTC 5 cut(s) 44, 347, 463, 541, 761
HpaII CCGG 2 cut(s) 116, 1053
HphI GGTGA 2 cut(s) 659, 1310
Hpy166II GTNNAC 4 cut(s) 335, 925, 1023, 1172
Hpy188I TCNGA 5 cut(s) 64, 211, 508, 1282, 1371
Hpy8I GTNNAC 4 cut(s) 335, 925, 1023, 1172
HpyAV CCTTC 4 cut(s) 237, 405, 1098, 1266
HpyCH4III ACNGT 3 cut(s) 788, 859, 1288
HpyCH4V TGCA 7 cut(s) 58, 191, 440, 755, 795, 970, 1424
HpyF10VI GCNNNNNNNGC 3 cut(s) 421, 659, 671
HpyF3I CTNAG 6 cut(s) 18, 63, 899, 1140, 1189, 1281
Hsp92II CATG 8 cut(s) 371, 428, 493, 604, 613, 970, 974, 1390
HspAI GCGC 1 cut(s) 831
Kzo9I GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
Lsp1109I GCAGC 4 cut(s) 369, 424, 649, 815
LweI GCATC 2 cut(s) 972, 1383
MaeI CTAG 7 cut(s) 330, 576, 800, 912, 960, 1167, 1401
MaeIII GTNAC 4 cut(s) 464, 485, 1145, 1288
MalI GATC 7 cut(s) 300, 324, 390, 555, 981, 1138, 1373
MboI GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
MboII GAAGA 6 cut(s) 182, 495, 974, 1003, 1038, 1428
MfeI CAATTG 1 cut(s) 1007
MflI RGATCY 2 cut(s) 553, 1136
MhlI GDGCHC 1 cut(s) 1217
MlyI GAGTC 3 cut(s) 341, 472, 535
Mph1103I ATGCAT 1 cut(s) 972
MroXI GAANNNNTTC 3 cut(s) 415, 1060, 1336
MseI TTAA 4 cut(s) 200, 248, 678, 1308
MslI CAYNNNNRTG 1 cut(s) 1391
MspA1I CMGCKG 2 cut(s) 437, 674
MspI CCGG 2 cut(s) 116, 1053
MspR9I CCNGG 3 cut(s) 750, 934, 1053
MunI CAATTG 1 cut(s) 1007
Mva1269I GAATGC 2 cut(s) 58, 1276
MvaI CCWGG 2 cut(s) 750, 934
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 421, 659, 671
NciI CCSGG 1 cut(s) 1053
NcoI CCATGG 1 cut(s) 1386
NdeII GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
NlaIII CATG 8 cut(s) 371, 428, 493, 604, 613, 970, 974, 1390
NlaIV GGNNCC 2 cut(s) 555, 778
NmuCI GTSAC 1 cut(s) 464
NsbI TGCGCA 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 972
PceI AGGCCT 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PctI GAATGC 2 cut(s) 58, 1276
PdmI GAANNNNTTC 3 cut(s) 415, 1060, 1336
PfeI GAWTC 2 cut(s) 44, 761
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 4 cut(s) 359, 439, 664, 830
PleI GAGTC 3 cut(s) 341, 471, 535
PpsI GAGTC 3 cut(s) 341, 471, 535
PsiI TTATAA 2 cut(s) 147, 1110
Psp6I CCWGG 2 cut(s) 748, 932
PspFI CCCAGC 2 cut(s) 120, 945
PspGI CCWGG 2 cut(s) 748, 932
PspN4I GGNNCC 2 cut(s) 555, 778
PspPI GGNCC 2 cut(s) 118, 713
PstI CTGCAG 2 cut(s) 442, 1426
PsuI RGATCY 2 cut(s) 553, 1136
PvuII CAGCTG 2 cut(s) 437, 674
RsaI GTAC 1 cut(s) 1241
RsaNI GTAC 1 cut(s) 1240
RseI CAYNNNNRTG 1 cut(s) 1391
SaqAI TTAA 4 cut(s) 200, 248, 678, 1308
SatI GCNGC 4 cut(s) 358, 438, 663, 829
Sau3AI GATC 7 cut(s) 298, 322, 388, 553, 979, 1136, 1371
Sau96I GGNCC 2 cut(s) 118, 713
ScaI AGTACT 1 cut(s) 1241
SchI GAGTC 3 cut(s) 341, 472, 535
ScrFI CCNGG 3 cut(s) 750, 934, 1053
SduI GDGCHC 1 cut(s) 1217
SfaNI GCATC 2 cut(s) 972, 1383
SfcI CTRYAG 2 cut(s) 438, 1422
SinI GGWCC 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 1391
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SpeI ACTAGT 2 cut(s) 799, 1166
SseBI AGGCCT 1 cut(s) 1255
SsiI CCGC 1 cut(s) 451
SspI AATATT 1 cut(s) 701
SspMI CTAG 7 cut(s) 330, 576, 800, 912, 960, 1167, 1401
StuI AGGCCT 1 cut(s) 1255
StyD4I CCNGG 3 cut(s) 748, 932, 1051
StyI CCWWGG 4 cut(s) 392, 594, 1068, 1386
TaaI ACNGT 3 cut(s) 788, 859, 1288
TaqI TCGA 4 cut(s) 325, 409, 544, 583
TatI WGTACW 1 cut(s) 1239
TfiI GAWTC 2 cut(s) 44, 761
Tru1I TTAA 4 cut(s) 200, 248, 678, 1308
Tru9I TTAA 4 cut(s) 200, 248, 678, 1308
TscAI CASTG 1 cut(s) 1414
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 4 cut(s) 357, 437, 662, 828
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 7 cut(s) 66, 191, 288, 812, 933, 1329, 1431
TspGWI ACGGA 3 cut(s) 182, 546, 854
TspRI CASTG 1 cut(s) 1414
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 713
XagI CCTNNNNNAGG 2 cut(s) 720, 1092
XapI RAATTY 9 cut(s) 27, 76, 140, 731, 940, 1060, 1160, 1205, 1336
XbaI TCTAGA 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 1438
XmiI GTMKAC 1 cut(s) 924
XmnI GAANNNNTTC 3 cut(s) 415, 1060, 1336
XspI CTAG 7 cut(s) 330, 576, 800, 912, 960, 1167, 1401
ZrmI AGTACT 1 cut(s) 1241
Zsp2I ATGCAT 1 cut(s) 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.