Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

12742182 .. 12748632

Gene Structure 6451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGAAGAATCAAATGAACTGCATTCTGAGGAGAATAAAAATTCCCAAGACAATAATAAGAAAAGAAAGCTCAAGACACCAGCCCAGCTTATGGCTTTGGAGAAATTTTATAATGAGCATAAATATCCTACGGAGGAAATGAAATCACAACTTGCAGAGCAGTTAAGATTGTCAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTCGAGAGATGAAACACAAGGTAATGGACGGCAAGATCGTTCAAGTGGTGTTATTCAGGATCGAGCTAGTGGACTTGGGCAGGACTCTTGTGGCAGCACTAAACATGGAGAGCATAGGTTTATTGATCCAAGGGAAGTTGAAAGTCGAAGGCTTTCTGGGCATGATTTCGCAGCTGCAGATATCACCCGCAATTATAGGAGTCACTATACAGAAAGAATTGGTGACATGGATAATACATCTTCAGAAAGTAGCTCGTCTTTGCAAGATAGGCTTTTGACTCAAAATGAGGATCCGTTTGATGTGGAAACTTCTAGATACCTAACACATACCAAGGGCATGGAAAACATGGGATATAAGCCCTCAGGGTTTTTGAAAGTGAAAGGTGAAGCAGAAAATCCTGCTATTACAGCTGTTAAGAGGCAACTCGGGAGGCAGTATCTGGAGGATGGTCCTCTATTAGGTGTAGAATTTGATTTGCTTCCTCCTGGTGCATTTGAATCACCGATTATGGATTCAGGCCATGAACCATCCACTCTTGGGAATCCTGTCCTCCGTTCTCCTGACATATCTGGAGTGAAAGGGCAACTAAGTCCAAGCACTAGATATGAAGTATACAACTCCAGGTTGAATTCCCAGGATTCATATTTACAGCAGGAAAATCCTAGCATCATGCATGGGTTTGATCTTCAGGAGAAGAAATCAAGCAAGCAATTGAGACAAAAGTCGACTTTTCTCAACGATACCAATCCTTCCCCTGGAAAAAATTCTCCCTTGGATATTTATGATAAACCTTCTGGAGGGATTTCTGCTTATAATAGCAATAAGAAAGATAGAATGAGATCTAAGGGTTACTACGGTAGGAAAGTTACTAGTGAACAAACAGAGCCTCGCTTAGATGAGTATGATAAATTTAGTAACACCAAGACTGTCCAAAGGAATGATTACTTGAAGTCAAGGCCTTCAAGTTCTATAGAGAAGTTTGATGGAGAATGTAAGGCCATGAAGGACTATCACAATCCACTTAGAGCAAAAATGAATTCTACAGATGAATTGGTGGTGAGTTACAAAACATGCCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

437

Amino Acids

49.64

Weight (kDa)

8.12

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	111, 1041
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	840, 953
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	4 cut(s)	294, 347, 512, 525
AcsI	RAATTY	7 cut(s)	40, 104, 695, 856, 991, 1136, 1264
AcuI	CTGAAG	2 cut(s)	453, 899
AfiI	CCNNNNNNNGG	5 cut(s)	91, 686, 765, 983, 1025
AgsI	TTSAA	7 cut(s)	270, 368, 601, 725, 856, 1177, 1191
AhlI	ACTAGT	1 cut(s)	1097
AjnI	CCWGG	4 cut(s)	712, 848, 861, 982
AluBI	AGCT	6 cut(s)	70, 88, 293, 401, 480, 638
AluI	AGCT	6 cut(s)	70, 88, 293, 401, 480, 638
Alw26I	GTCTC	1 cut(s)	937
AlwI	GGATC	4 cut(s)	294, 347, 512, 525
AlwNI	CAGNNNCTG	1 cut(s)	667
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	3 cut(s)	745, 1184, 1224
ApeKI	GCWGC	3 cut(s)	321, 398, 401
ApoI	RAATTY	7 cut(s)	40, 104, 695, 856, 991, 1136, 1264
Asp700I	GAANNNNTTC	2 cut(s)	379, 991
AspS9I	GGNCC	1 cut(s)	677
AsuHPI	GGTGA	5 cut(s)	403, 461, 623, 720, 1297
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	677
AxyI	CCTNAGG	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	517
BbvI	GCAGC	3 cut(s)	333, 388, 410
BccI	CCATC	4 cut(s)	186, 668, 763, 1205
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	4 cut(s)	714, 850, 863, 984
BcoDI	GTCTC	1 cut(s)	937
BcuI	ACTAGT	1 cut(s)	1097
BfaI	CTAG	5 cut(s)	294, 540, 828, 891, 1098
BfmI	CTRYAG	3 cut(s)	402, 1197, 1269
BglII	AGATCT	1 cut(s)	1067
BisI	GCNGC	3 cut(s)	322, 399, 402
BlsI	GCNGC	3 cut(s)	323, 400, 403
Bme1390I	CCNGG	4 cut(s)	714, 850, 863, 984
Bme18I	GGWCC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	4 cut(s)	714, 850, 863, 984
BmsI	GCATC	1 cut(s)	903
BoxI	GACNNNNGTC	1 cut(s)	949
BpmI	CTGGAG	4 cut(s)	689, 819, 832, 1044
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	5 cut(s)	356, 558, 861, 982, 999
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 686, 765, 983, 1025
Bse21I	CCTNAGG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	4 cut(s)	714, 850, 863, 984
BseDI	CCNNGG	5 cut(s)	356, 558, 861, 982, 999
BseGI	GGATG	3 cut(s)	197, 679, 755
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	5 cut(s)	91, 686, 765, 983, 1025
BseMII	CTCAG	2 cut(s)	18, 603
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	333, 388, 410
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	3 cut(s)	747, 1186, 1226
BsiHKCI	CYCGRG	1 cut(s)	653
BslI	CCNNNNNNNGG	5 cut(s)	91, 686, 765, 983, 1025
BsmAI	GTCTC	1 cut(s)	937
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	747, 1186, 1226
BsoBI	CYCGRG	1 cut(s)	653
Bsp143I	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	3 cut(s)	747, 1186, 1226
BspCNI	CTCAG	2 cut(s)	19, 602
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	4 cut(s)	294, 347, 512, 525
BssECI	CCNNGG	5 cut(s)	356, 558, 861, 982, 999
BssMI	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
BssNAI	GTATAC	1 cut(s)	841
BssT1I	CCWWGG	3 cut(s)	356, 558, 999
Bst1107I	GTATAC	1 cut(s)	841
Bst2UI	CCWGG	4 cut(s)	714, 850, 863, 984
Bst4CI	ACNGT	2 cut(s)	1085, 1156
BstC8I	GCNNGC	1 cut(s)	935
BstDEI	CTNAG	6 cut(s)	27, 589, 815, 1071, 1120, 1250
BstENI	CCTNNNNNAGG	2 cut(s)	684, 1023
BstF5I	GGATG	3 cut(s)	197, 679, 755
BstKTI	GATC	6 cut(s)	265, 289, 355, 520, 913, 1070
BstMAI	GTCTC	1 cut(s)	937
BstMBI	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 496, 635
BstNI	CCWGG	4 cut(s)	714, 850, 863, 984
BstNSI	RCATGY	1 cut(s)	1302
BstPAI	GACNNNNGTC	1 cut(s)	949
BstSCI	CCNGG	4 cut(s)	712, 848, 861, 982
BstSFI	CTRYAG	3 cut(s)	402, 1197, 1269
BstV1I	GCAGC	3 cut(s)	333, 388, 410
BstX2I	RGATCY	2 cut(s)	517, 1067
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	2 cut(s)	517, 1067
BstZ17I	GTATAC	1 cut(s)	841
Bsu36I	CCTNAGG	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	747, 1186, 1226
BtsCI	GGATG	3 cut(s)	197, 679, 755
Cac8I	GCNNGC	1 cut(s)	935
CaiI	CAGNNNCTG	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	677
DdeI	CTNAG	6 cut(s)	27, 589, 815, 1071, 1120, 1250
DpnI	GATC	6 cut(s)	264, 288, 354, 519, 912, 1069
DpnII	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
Eco130I	CCWWGG	3 cut(s)	356, 558, 999
Eco147I	AGGCCT	1 cut(s)	1186
Eco32I	GATATC	2 cut(s)	186, 409
Eco47I	GGWCC	1 cut(s)	677
Eco57I	CTGAAG	2 cut(s)	453, 899
Eco81I	CCTNAGG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	2 cut(s)	684, 1023
EcoRI	GAATTC	2 cut(s)	856, 1264
EcoRII	CCWGG	4 cut(s)	712, 848, 861, 982
EcoRV	GATATC	2 cut(s)	186, 409
EcoT14I	CCWWGG	3 cut(s)	356, 558, 999
EcoT22I	ATGCAT	1 cut(s)	903
ErhI	CCWWGG	3 cut(s)	356, 558, 999
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	2 cut(s)	840, 953
Fnu4HI	GCNGC	3 cut(s)	322, 399, 402
FokI	GGATG	3 cut(s)	204, 686, 742
Fsp4HI	GCNGC	3 cut(s)	322, 399, 402
FspBI	CTAG	5 cut(s)	294, 540, 828, 891, 1098
GluI	GCNGC	3 cut(s)	322, 399, 402
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	4 cut(s)	689, 819, 832, 1044
HaeIII	GGCC	3 cut(s)	747, 1186, 1226
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	8 cut(s)	8, 311, 427, 505, 725, 740, 769, 866
HphI	GGTGA	5 cut(s)	403, 461, 623, 720, 1297
Hpy166II	GTNNAC	4 cut(s)	299, 841, 954, 1103
Hpy188I	TCNGA	3 cut(s)	28, 175, 472
Hpy8I	GTNNAC	4 cut(s)	299, 841, 954, 1103
HpyAV	CCTTC	6 cut(s)	201, 369, 987, 1029, 1197, 1225
HpyCH4III	ACNGT	2 cut(s)	1085, 1156
HpyCH4V	TGCA	6 cut(s)	22, 155, 404, 490, 719, 901
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 496, 635
HpyF3I	CTNAG	6 cut(s)	27, 589, 815, 1071, 1120, 1250
Kzo9I	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
Lsp1109I	GCAGC	3 cut(s)	333, 388, 410
LweI	GCATC	1 cut(s)	903
MaeI	CTAG	5 cut(s)	294, 540, 828, 891, 1098
MaeIII	GTNAC	6 cut(s)	428, 449, 1076, 1093, 1142, 1289
MalI	GATC	6 cut(s)	264, 288, 354, 519, 912, 1069
MboI	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
MboII	GAAGA	4 cut(s)	17, 459, 905, 934
MfeI	CAATTG	1 cut(s)	938
MflI	RGATCY	2 cut(s)	517, 1067
MlyI	GAGTC	3 cut(s)	305, 436, 499
Mph1103I	ATGCAT	1 cut(s)	903
MroXI	GAANNNNTTC	2 cut(s)	379, 991
MseI	TTAA	4 cut(s)	164, 212, 642, 1309
MspA1I	CMGCKG	2 cut(s)	401, 638
MspR9I	CCNGG	4 cut(s)	714, 850, 863, 984
MunI	CAATTG	1 cut(s)	938
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	4 cut(s)	714, 850, 863, 984
MwoI	GCNNNNNNNGC	3 cut(s)	385, 496, 635
NdeII	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	428, 449
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	1 cut(s)	1302
PceI	AGGCCT	1 cut(s)	1186
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	2 cut(s)	379, 991
PfeI	GAWTC	5 cut(s)	8, 725, 740, 769, 866
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	323, 400, 403
PleI	GAGTC	3 cut(s)	305, 435, 499
PpsI	GAGTC	3 cut(s)	305, 435, 499
PshAI	GACNNNNGTC	1 cut(s)	949
PsiI	TTATAA	2 cut(s)	111, 1041
Psp6I	CCWGG	4 cut(s)	712, 848, 861, 982
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	4 cut(s)	712, 848, 861, 982
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	517, 1067
PvuII	CAGCTG	2 cut(s)	401, 638
SalI	GTCGAC	1 cut(s)	952
SaqAI	TTAA	4 cut(s)	164, 212, 642, 1309
SatI	GCNGC	3 cut(s)	322, 399, 402
Sau3AI	GATC	6 cut(s)	262, 286, 352, 517, 910, 1067
Sau96I	GGNCC	1 cut(s)	677
SchI	GAGTC	3 cut(s)	305, 436, 499
ScrFI	CCNGG	4 cut(s)	714, 850, 863, 984
SfaNI	GCATC	1 cut(s)	903
SfcI	CTRYAG	3 cut(s)	402, 1197, 1269
SinI	GGWCC	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	1097
SseBI	AGGCCT	1 cut(s)	1186
SsiI	CCGC	1 cut(s)	415
SspMI	CTAG	5 cut(s)	294, 540, 828, 891, 1098
StuI	AGGCCT	1 cut(s)	1186
StyD4I	CCNGG	4 cut(s)	712, 848, 861, 982
StyI	CCWWGG	3 cut(s)	356, 558, 999
TaaI	ACNGT	2 cut(s)	1085, 1156
TaqI	TCGA	4 cut(s)	230, 289, 373, 953
TfiI	GAWTC	5 cut(s)	8, 725, 740, 769, 866
Tru1I	TTAA	4 cut(s)	164, 212, 642, 1309
Tru9I	TTAA	4 cut(s)	164, 212, 642, 1309
TseFI	GTSAC	2 cut(s)	428, 449
TseI	GCWGC	3 cut(s)	321, 398, 401
Tsp45I	GTSAC	2 cut(s)	428, 449
TspDTI	ATGAA	9 cut(s)	30, 155, 252, 765, 849, 858, 1244, 1277, 1290
TspGWI	ACGGA	3 cut(s)	146, 510, 770
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	677
XagI	CCTNNNNNAGG	2 cut(s)	684, 1023
XapI	RAATTY	7 cut(s)	40, 104, 695, 856, 991, 1136, 1264
XbaI	TCTAGA	1 cut(s)	539
XceI	RCATGY	1 cut(s)	1302
XmiI	GTMKAC	2 cut(s)	840, 953
XmnI	GAANNNNTTC	2 cut(s)	379, 991
XspI	CTAG	5 cut(s)	294, 540, 828, 891, 1098
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.