Rorug05G0263100

Homeobox KN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008574
Physical Location & Seq
Forward (+)
29846030 .. 29846488
459 bp
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UTR
Exon/CDS
Intron
Rorug05G0263100.1

Sequence Viewer

Length: 459 bp
ATGTCTCATTTTTCCCATGTGGGATGTATATATATTCTCAACAGGGTGGTCCTTATCAAACTCTTCTCCTGCGTCGGGTGTGTCCTTATAAGATTGAACCATAAGTCAGGCCCTGTGTGCCCTTCGCTGTTCAACTTCTTCATGATGAAGGACATTGTGTTTGTTGGGGTTCATGTCAACGAGGATGTGAGGATGTTGAAGGAGAATTATGGGGTTGTGGTTAGGAATGTGGTGGAGTTGAGTGAATTGGCGGCATATTGGCTTCGAAAGCCGCGGCTTTTTCCTTATGGAGCAAGGGATTTGGCAAGAGATGTTTTGAAGCTGGGGCTTGAGCAGAGGTCTCAGAAGGTGGCTTGGATGAGCTGGACTGAGGAGTTTCTGACCGCAGAGCAGATCGAGTGTGCAACTGTTGATGCTTATGTTGCTTATAAAACTGGGAAGAAGTTACTGAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox

Protein Analysis

152

Amino Acids

17.41

Weight (kDa)

9.01

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 12 - 150 9.2e-11 3'-5' exonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 89, 429
AccII CGCG 1 cut(s) 274
AciI CCGC 4 cut(s) 251, 272, 274, 384
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 97, 133, 199, 319
AluBI AGCT 3 cut(s) 322, 363, 456
AluI AGCT 3 cut(s) 322, 363, 456
Alw26I GTCTC 2 cut(s) 9, 345
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 453
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspS9I GGNCC 2 cut(s) 49, 110
AsuII TTCGAA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 9, 345
BfaI CTAG 1 cut(s) 457
BisI GCNGC 4 cut(s) 252, 272, 275, 454
BlsI GCNGC 4 cut(s) 253, 273, 276, 455
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 49, 110
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 4 cut(s) 29, 190, 198, 363
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 356, 360, 440
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 9, 345
BsnI GGCC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 345
Bsp119I TTCGAA 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 393
BspACI CCGC 4 cut(s) 251, 272, 274, 384
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 3 cut(s) 355, 361, 441
BspFNI CGCG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 342, 369, 449
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 4 cut(s) 29, 190, 198, 363
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 2 cut(s) 9, 345
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 117, 268, 422
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 1 cut(s) 274
BsuRI GGCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 4 cut(s) 29, 190, 198, 363
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 49, 110
Cfr42I CCGCGG 1 cut(s) 275
CseI GACGC 1 cut(s) 61
CviAII CATG 3 cut(s) 17, 142, 173
CviJI RGCY 9 cut(s) 111, 262, 271, 277, 322, 328, 353, 363, 456
CviKI_1 RGCY 9 cut(s) 111, 262, 271, 277, 322, 328, 353, 363, 456
DdeI CTNAG 3 cut(s) 342, 369, 449
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 110
FaeI CATG 3 cut(s) 20, 145, 176
FatI CATG 3 cut(s) 16, 141, 172
Fnu4HI GCNGC 4 cut(s) 252, 272, 275, 454
FokI GGATG 4 cut(s) 36, 197, 205, 370
Fsp4HI GCNGC 4 cut(s) 252, 272, 275, 454
FspBI CTAG 1 cut(s) 457
GluI GCNGC 4 cut(s) 252, 272, 275, 454
GsaI CCCAGC 1 cut(s) 326
HaeIII GGCC 1 cut(s) 111
HgaI GACGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 20, 145, 176
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 345, 381
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 132, 142, 193, 340
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 268, 422
HpyF3I CTNAG 3 cut(s) 342, 369, 449
Hsp92II CATG 3 cut(s) 20, 145, 176
KspI CCGCGG 1 cut(s) 275
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 28, 82, 93, 126, 308, 349, 420
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 457
MaeIII GTNAC 1 cut(s) 444
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 3 cut(s) 55, 130, 451
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 205, 245
MnlI CCTC 4 cut(s) 175, 183, 330, 364
MspA1I CMGCKG 1 cut(s) 274
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 117, 268, 422
NdeII GATC 1 cut(s) 393
NlaIII CATG 3 cut(s) 20, 145, 176
NspV TTCGAA 1 cut(s) 265
PagI TCATGA 1 cut(s) 141
PkrI GCNGC 4 cut(s) 253, 273, 276, 455
PsiI TTATAA 2 cut(s) 89, 429
PspFI CCCAGC 1 cut(s) 322
PspPI GGNCC 2 cut(s) 49, 110
PstNI CAGNNNCTG 1 cut(s) 113
SacII CCGCGG 1 cut(s) 275
SatI GCNGC 4 cut(s) 252, 272, 275, 454
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 2 cut(s) 49, 110
SduI GDGCHC 1 cut(s) 122
SetI ASST 5 cut(s) 324, 341, 351, 365, 458
SfaNI GCATC 1 cut(s) 403
Sfr303I CCGCGG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 265
SgrBI CCGCGG 1 cut(s) 275
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 205, 245
SsiI CCGC 4 cut(s) 251, 272, 274, 384
SspMI CTAG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 265, 396
TasI AATT 2 cut(s) 205, 245
TauI GCSGC 3 cut(s) 254, 274, 277
TseI GCWGC 1 cut(s) 453
TspDTI ATGAA 3 cut(s) 130, 161, 161
VpaK11BI GGWCC 1 cut(s) 49
XspI CTAG 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.