Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

52822420 .. 52833767

Gene Structure 11348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAGAGTCAAATGAAGTTCATTCAGAGGAGAATAAAACTTCATTTGATAATAAGAAAAGAGTACTCAAGACACCAGCCCAGCTTATGGCTTTGGAGAAATTTTATAATGAGCATAAGTATCCTACAGAGGAAATGAAATCACAACTCGCTGAGGAGTTGGGGTTGTCAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTCTAGAGATGAAACATATGCTAATGGACGGCAAGATCGTTCAAGTGGTGTTATTCAGGATCGCGCTAGTGGACTTGGGCAAGACTCATGTGGTAGCACTAAACATGGAGACTACAGGTACGTTGATCCTAGGGAGGTTGAAAGTCGGAGGCTTTCTGGGTATGATTTCCCACCCGCAGATCTCACTCGTGAGCATCGGATTCATTATACAGAAAGAGTTAGCATGGATAATACATCTTCAGAAAGTAGCTCATCTTTACAAGATAGGTTTCTTACTCAAACTGAAGATCCATATGATATGGAAACATCTAGATACGTAACGGATAATGTGGTCTTTTCACCCTTAAATACGAAAGGCGCAGAAAACATGGGATATAAGCCCTCAGGGTATTTGAAAGTCAAAGGCGAAATAGAAAATGCTGCTATTACAGCTGTTAAGAGGCAACTTGGGAGGCATTTTCGGGAGGATGGTCCTCCATTAGGTGTAGAATTTGATCCACTTCCTCCTGGTGCATTTGAATCCCCGATTATGGATCCAGTGCAAGAACCATCAATTGGTGGGGATGCTGCTGGTCTTGATTCCCCTGACACATCTGGAGTAAAAAGGCAACCAAGTCCAAGCACTAGATATGAAGTATATAATTCCAAGTTGAGTTCCCAGGGTTTGTATATGCACCAGGAAAACCGTGAAGAAAACAAGAGGCTACAGACAACTAGACCTAAAGAGTATAAGCTCTTAAAGGCAAAGAATGATGCCAAAGGGATACGTCGATTATGGCTGAGGCCTATACAAGGCAATATTCCATGGTCGCATTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

349

Amino Acids

39.79

Weight (kDa)

6.54

Isoelectric Point (pI)

70.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	19 - 74	8.4e-18	Homeodomain
Homeobox_KN	PF05920	39 - 69	9.8e-08	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccB7I	CCANNNNNTGG	2 cut(s)	88, 779
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	6 cut(s)	291, 344, 506, 713, 752, 765
AcsI	RAATTY	2 cut(s)	101, 713
AcuI	CTGAAG	2 cut(s)	447, 528
AfaI	GTAC	2 cut(s)	66, 344
AfiI	CCNNNNNNNGG	5 cut(s)	88, 704, 754, 779, 1016
AgsI	TTSAA	4 cut(s)	267, 365, 619, 743
AjnI	CCWGG	3 cut(s)	730, 882, 900
AjuI	GAANNNNNNNTTGG	2 cut(s)	762, 794
AluBI	AGCT	4 cut(s)	85, 474, 656, 958
AluI	AGCT	4 cut(s)	85, 474, 656, 958
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	6 cut(s)	291, 344, 506, 713, 752, 765
AoxI	GGCC	1 cut(s)	1007
ApeKI	GCWGC	2 cut(s)	644, 791
ApoI	RAATTY	2 cut(s)	101, 713
AspA2I	CCTAGG	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	290, 584
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	695
AvrII	CCTAGG	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	757
BauI	CACGAG	1 cut(s)	411
BbvCI	CCTCAGC	2 cut(s)	153, 1004
BbvI	GCAGC	2 cut(s)	631, 778
BccI	CCATC	3 cut(s)	183, 686, 781
BceAI	ACGGC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	732, 884, 902
BciVI	GTATCC	2 cut(s)	132, 981
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	6 cut(s)	228, 291, 354, 534, 849, 939
BfmI	CTRYAG	3 cut(s)	126, 337, 929
BfuI	GTATCC	2 cut(s)	132, 981
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	645, 792
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	2 cut(s)	646, 793
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	3 cut(s)	732, 884, 902
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	3 cut(s)	732, 884, 902
BmsI	GCATC	3 cut(s)	427, 778, 967
BpmI	CTGGAG	1 cut(s)	840
Bpu10I	CCTNAGC	2 cut(s)	153, 1004
BpuEI	CTTGAG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	541
BsaJI	CCNNGG	4 cut(s)	353, 882, 883, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 704, 754, 779, 1016
Bse1I	ACTGG	1 cut(s)	761
Bse21I	CCTNAGG	1 cut(s)	607
BseBI	CCWGG	3 cut(s)	732, 884, 902
BseDI	CCNNGG	4 cut(s)	353, 882, 883, 1028
BseGI	GGATG	3 cut(s)	194, 697, 793
BseLI	CCNNNNNNNGG	5 cut(s)	88, 704, 754, 779, 1016
BseMII	CTCAG	3 cut(s)	144, 621, 995
BseNI	ACTGG	1 cut(s)	761
BseRI	GAGGAG	2 cut(s)	44, 170
BseXI	GCAGC	2 cut(s)	631, 778
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	1009
BslI	CCNNNNNNNGG	5 cut(s)	88, 704, 754, 779, 1016
BsmAI	GTCTC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	1009
Bsp143I	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
Bsp19I	CCATGG	1 cut(s)	1028
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	1009
BspCNI	CTCAG	3 cut(s)	145, 620, 996
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	6 cut(s)	291, 344, 506, 713, 752, 765
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	4 cut(s)	353, 882, 883, 1028
BssMI	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	2 cut(s)	353, 1028
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	3 cut(s)	732, 884, 902
Bst4CI	ACNGT	1 cut(s)	911
BstBAI	YACGTR	1 cut(s)	541
BstDEI	CTNAG	3 cut(s)	153, 607, 1004
BstDSI	CCRYGG	1 cut(s)	1028
BstENI	CCTNNNNNAGG	2 cut(s)	702, 1014
BstF5I	GGATG	3 cut(s)	194, 697, 793
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	290, 584
BstKTI	GATC	7 cut(s)	262, 286, 352, 406, 514, 721, 760
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	3 cut(s)	732, 884, 902
BstSCI	CCNGG	3 cut(s)	730, 882, 900
BstSFI	CTRYAG	3 cut(s)	126, 337, 929
BstSNI	TACGTA	1 cut(s)	541
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	631, 778
BstX2I	RGATCY	3 cut(s)	403, 511, 757
BstYI	RGATCY	3 cut(s)	403, 511, 757
Bsu36I	CCTNAGG	1 cut(s)	607
BsuI	GTATCC	2 cut(s)	132, 981
BsuRI	GGCC	1 cut(s)	1009
BtgI	CCRYGG	1 cut(s)	1028
BtsCI	GGATG	3 cut(s)	194, 697, 793
BtsIMutI	CAGTG	1 cut(s)	768
CfoI	GCGC	2 cut(s)	290, 584
Cfr13I	GGNCC	1 cut(s)	695
Csp6I	GTAC	2 cut(s)	65, 343
CviAII	CATG	5 cut(s)	312, 329, 448, 592, 1029
CviQI	GTAC	2 cut(s)	65, 343
DdeI	CTNAG	3 cut(s)	153, 607, 1004
DpnI	GATC	7 cut(s)	261, 285, 351, 405, 513, 720, 759
DpnII	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
Eco105I	TACGTA	1 cut(s)	541
Eco130I	CCWWGG	2 cut(s)	353, 1028
Eco147I	AGGCCT	1 cut(s)	1009
Eco32I	GATATC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	447, 528
Eco81I	CCTNAGG	1 cut(s)	607
EcoNI	CCTNNNNNAGG	2 cut(s)	702, 1014
EcoRII	CCWGG	3 cut(s)	730, 882, 900
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	2 cut(s)	353, 1028
ErhI	CCWWGG	2 cut(s)	353, 1028
FaeI	CATG	5 cut(s)	315, 332, 451, 595, 1032
FatI	CATG	5 cut(s)	311, 328, 447, 591, 1028
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	2 cut(s)	241, 517
Fnu4HI	GCNGC	2 cut(s)	645, 792
FokI	GGATG	3 cut(s)	201, 704, 800
Fsp4HI	GCNGC	2 cut(s)	645, 792
FspBI	CTAG	6 cut(s)	228, 291, 354, 534, 849, 939
GlaI	GCGC	2 cut(s)	289, 583
GluI	GCNGC	2 cut(s)	645, 792
GsaI	CCCAGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	840
HaeIII	GGCC	1 cut(s)	1009
HhaI	GCGC	2 cut(s)	290, 584
Hin1II	CATG	5 cut(s)	315, 332, 451, 595, 1032
Hin6I	GCGC	2 cut(s)	288, 582
HinP1I	GCGC	2 cut(s)	288, 582
HinfI	GANTC	5 cut(s)	8, 308, 424, 743, 803
HphI	GGTGA	1 cut(s)	555
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	5 cut(s)	28, 172, 372, 423, 466
Hpy188III	TCNNGA	9 cut(s)	70, 186, 228, 281, 413, 534, 686, 800, 819
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	996
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	911
HpyCH4IV	ACGT	3 cut(s)	345, 540, 991
HpyCH4V	TGCA	3 cut(s)	737, 766, 898
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	3 cut(s)	153, 607, 1004
HpySE526I	ACGT	3 cut(s)	345, 540, 991
Hsp92II	CATG	5 cut(s)	315, 332, 451, 595, 1032
HspAI	GCGC	2 cut(s)	288, 582
Kzo9I	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
Lsp1109I	GCAGC	2 cut(s)	631, 778
LweI	GCATC	3 cut(s)	427, 778, 967
MaeI	CTAG	6 cut(s)	228, 291, 354, 534, 849, 939
MaeII	ACGT	3 cut(s)	345, 540, 991
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	7 cut(s)	261, 285, 351, 405, 513, 720, 759
MboI	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
MboII	GAAGA	4 cut(s)	17, 453, 521, 926
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	3 cut(s)	403, 511, 757
MluCI	AATT	4 cut(s)	101, 713, 777, 865
MlyI	GAGTC	2 cut(s)	17, 302
MmeI	TCCRAC	1 cut(s)	350
MseI	TTAA	4 cut(s)	209, 569, 660, 962
MspA1I	CMGCKG	1 cut(s)	656
MspR9I	CCNGG	3 cut(s)	732, 884, 902
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	3 cut(s)	732, 884, 902
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	1028
NdeI	CATATG	2 cut(s)	241, 517
NdeII	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
NlaIII	CATG	5 cut(s)	315, 332, 451, 595, 1032
NlaIV	GGNNCC	1 cut(s)	759
PasI	CCCWGGG	1 cut(s)	883
PceI	AGGCCT	1 cut(s)	1009
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	424, 743, 803
PflMI	CCANNNNNTGG	2 cut(s)	88, 779
PkrI	GCNGC	2 cut(s)	646, 793
PleI	GAGTC	2 cut(s)	16, 302
PpsI	GAGTC	2 cut(s)	16, 302
Ppu21I	YACGTR	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	108
Psp6I	CCWGG	3 cut(s)	730, 882, 900
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	3 cut(s)	730, 882, 900
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	695
PsuI	RGATCY	3 cut(s)	403, 511, 757
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	2 cut(s)	66, 344
RsaNI	GTAC	2 cut(s)	65, 343
SaqAI	TTAA	4 cut(s)	209, 569, 660, 962
SatI	GCNGC	2 cut(s)	645, 792
Sau3AI	GATC	7 cut(s)	259, 283, 349, 403, 511, 718, 757
Sau96I	GGNCC	1 cut(s)	695
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	2 cut(s)	17, 302
ScrFI	CCNGG	3 cut(s)	732, 884, 902
SfaNI	GCATC	3 cut(s)	427, 778, 967
SfcI	CTRYAG	3 cut(s)	126, 337, 929
SinI	GGWCC	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SnaBI	TACGTA	1 cut(s)	541
Sse9I	AATT	4 cut(s)	101, 713, 777, 865
SseBI	AGGCCT	1 cut(s)	1009
SsiI	CCGC	1 cut(s)	399
SspI	AATATT	1 cut(s)	1024
SspMI	CTAG	6 cut(s)	228, 291, 354, 534, 849, 939
StuI	AGGCCT	1 cut(s)	1009
StyD4I	CCNGG	3 cut(s)	730, 882, 900
StyI	CCWWGG	2 cut(s)	353, 1028
TaaI	ACNGT	1 cut(s)	911
TaiI	ACGT	3 cut(s)	348, 543, 994
TaqI	TCGA	1 cut(s)	994
TasI	AATT	4 cut(s)	101, 713, 777, 865
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	424, 743, 803
Tru1I	TTAA	4 cut(s)	209, 569, 660, 962
Tru9I	TTAA	4 cut(s)	209, 569, 660, 962
TscAI	CASTG	1 cut(s)	768
TseI	GCWGC	2 cut(s)	644, 791
TspDTI	ATGAA	7 cut(s)	11, 30, 33, 152, 249, 416, 870
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	768
Van91I	CCANNNNNTGG	2 cut(s)	88, 779
VpaK11BI	GGWCC	1 cut(s)	695
XagI	CCTNNNNNAGG	2 cut(s)	702, 1014
XapI	RAATTY	2 cut(s)	101, 713
XbaI	TCTAGA	2 cut(s)	227, 533
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	6 cut(s)	228, 291, 354, 534, 849, 939
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.