Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008574

Physical Location & Seq

Genomic Coordinates Forward (+)

22428339 .. 22436561

Gene Structure 8223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1167600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGAAGTTGGGAATGGAGAGATGATCCAATCAAATGAACTGCATTCTGAGGAGAATAAAAATTCCCAAGACAACAATAAGAAAAGAAAGCTCAAGACACCAGCCCAGCTTATGGCTTTGGAGAAATTTTATAATGAGCATAAATATCCTACGGAGGAAATGAAATCACAACTTGCGGAGCAGTTAAGATTGTCAGAAAAGCAGATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGACAAAAGATTGTCGAGAGATGAAACACAAGGTAATGGACGGCAAGATCGTTCAAGTGGTGTTATTCAGGATCGAGCTAGTGGACTTGGGCAGGACTCTTGTGGCAGCACTAAACATGGAGAGCATAGGTTTATTGATCCAAGGGAAGTTGAAAGTCGAAGGCTTTCTGGGCATGATTTCGCAGCTGCAGATATCACCCGCAATTATAGTAGTCACTATACAGAGAGAGTTGGTGACATGGAAAATACATCTTCAGAAAGTAGCTCGTCTTTACAAGATAGGTTCTTGACTCAAAATGAGGATCCGTATGATGTGGAAACTTCTAGATACCTAACACATACCAAGGGCATGGAAAACATGGGATATAAGCCCTCAGGGTTTTTGAAAGTGAAAGGTGAAGCAGAAAATGCTGCTATTACAGCTGTTAAGAGGCAACTCGGGAGGCAGTATCTGGAGGATGGTCCTCTGTTAGGTGTAGAATTTGATTTGCTTCCTCCTGGTGCATTTGAATCACCGATTATGGATTCAGGCCATGAACCATCCACTCTTGGTAATCCTGTCCTCCGTTCTCCTGATATATCTGGAGTGAAAGGGCAACTAAGTCCAAGCACTAGATATGAAGTATACAACTCCAGGTTGAATTCCCAGGATTCATATTTACAGCAGGAAAATCCTAGCATCATGCATGGGTTTGATCTTCAGGAGAAGAAATCAAGCAAGCAATTGAGACAAAAGTCGACTTTTCTCAACAATACCAATCCTTTCCCTGGAAAAAATTCTCCCTTGGATATTTACGATAAACCTTCTGGAGGGATTTCTGCTTATAATAGCAATAAGAAAGATAGAATGAGATCTAAGGGTTACTACGGTAGGAAAGTTACTAGTGAACAAACAGAGCCTCGCTTAGATGAGTATGATAAATTTAGTAACCCCAAGACTGTCCAAAGGAATGATTACTTGAAGTCAAGGCCTTCAAGTTCTATAGAGGAGAAGTTTGATGGAGAATGTAAGGCCATGAAGGACTATCACAATCCGCTTAGAGCAAAAATGAATTCTACAGATGAATTGGTGGTTACAAAACAAGCCAGAGTTAATCTCCCTCAACGAGACTATGCACCAAATTCATTTGCTCAAATTCCACCTCGTAAACATCAGATTAAAGGAATTGCCATGGAGATGCCATCTAGCTTCAGTGAGGATGAAACTGCAGAAACCAATTCTTCTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

490

Amino Acids

55.49

Weight (kDa)

6.89

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 82	1e-16	Homeodomain
Homeobox_KN	PF05920	47 - 77	5.4e-07	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03250
fragaria_vesca	FvH4_3g27990 FvH4_3g27990 FvH4_3g27990 FvH4_3g27990
malus_domestica	MD03G1167600.v1.1 MD11G1186500.v1.1
prunus_persica	Prupe.4G267700_v2.0.a1 Prupe.4G267700_v2.0.a1
pyrus_communis	pycom03g12280 pycom11g16120
rosa_chinensis	RchiOBHm_Chr5g0050681
rosa_laevigata	RLG00000034723
rosa_multiflora	Rmu_sc0007911.1_g000002 Rmu_ssc0000350.1_g000043
rosa_roxburghii	Rroxscaffold_1G00030120
rosa_rugosa	Rorug05G0263100 Rorug05G0263200
rosa_samantha	Rh5AG335000 Rh5BG344300 Rh5CG372400 Rh5DG357500
rosa_wichuraiana	Rw5G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	132, 1062
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccI	GTMKAC	2 cut(s)	861, 974
AciI	CCGC	3 cut(s)	176, 436, 1271
AclWI	GGATC	5 cut(s)	19, 315, 368, 533, 546
AcsI	RAATTY	9 cut(s)	61, 125, 716, 877, 1012, 1157, 1288, 1357, 1371
AcuI	CTGAAG	3 cut(s)	474, 920, 1411
AfiI	CCNNNNNNNGG	4 cut(s)	112, 707, 1004, 1046
AgsI	TTSAA	7 cut(s)	291, 389, 622, 746, 877, 1198, 1212
AhlI	ACTAGT	1 cut(s)	1118
AjnI	CCWGG	4 cut(s)	733, 869, 882, 1003
AluBI	AGCT	7 cut(s)	91, 109, 314, 422, 501, 659, 1425
AluI	AGCT	7 cut(s)	91, 109, 314, 422, 501, 659, 1425
Alw26I	GTCTC	2 cut(s)	958, 1338
AlwI	GGATC	5 cut(s)	19, 315, 368, 533, 546
AlwNI	CAGNNNCTG	1 cut(s)	688
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	3 cut(s)	766, 1205, 1248
ApeKI	GCWGC	4 cut(s)	342, 419, 422, 647
ApoI	RAATTY	9 cut(s)	61, 125, 716, 877, 1012, 1157, 1288, 1357, 1371
Asp700I	GAANNNNTTC	2 cut(s)	400, 1012
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	4 cut(s)	424, 482, 644, 741
AvaI	CYCGRG	1 cut(s)	674
AvaII	GGWCC	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	610
BamHI	GGATCC	1 cut(s)	538
BbvI	GCAGC	4 cut(s)	354, 409, 431, 634
BccI	CCATC	5 cut(s)	207, 689, 784, 1229, 1426
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	4 cut(s)	735, 871, 884, 1005
BcoDI	GTCTC	2 cut(s)	958, 1338
BcuI	ACTAGT	1 cut(s)	1118
BfaI	CTAG	6 cut(s)	315, 561, 849, 912, 1119, 1422
BfmI	CTRYAG	4 cut(s)	423, 1218, 1293, 1443
BglII	AGATCT	1 cut(s)	1088
BisI	GCNGC	4 cut(s)	343, 420, 423, 648
BlsI	GCNGC	4 cut(s)	344, 421, 424, 649
Bme1390I	CCNGG	4 cut(s)	735, 871, 884, 1005
Bme18I	GGWCC	1 cut(s)	698
BmeT110I	CYCGRG	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	4 cut(s)	735, 871, 884, 1005
BmsI	GCATC	2 cut(s)	924, 1404
BoxI	GACNNNNGTC	1 cut(s)	970
BplI	GAGNNNNNCTC	2 cut(s)	1317, 1349
BpmI	CTGGAG	4 cut(s)	710, 840, 853, 1065
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	6 cut(s)	377, 579, 882, 1003, 1020, 1407
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 707, 1004, 1046
Bse21I	CCTNAGG	1 cut(s)	610
BseBI	CCWGG	4 cut(s)	735, 871, 884, 1005
BseDI	CCNNGG	6 cut(s)	377, 579, 882, 1003, 1020, 1407
BseGI	GGATG	4 cut(s)	218, 700, 776, 1441
BseLI	CCNNNNNNNGG	4 cut(s)	112, 707, 1004, 1046
BseMII	CTCAG	2 cut(s)	39, 624
BseRI	GAGGAG	2 cut(s)	65, 1238
BseXI	GCAGC	4 cut(s)	354, 409, 431, 634
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	3 cut(s)	768, 1207, 1250
BsiHKCI	CYCGRG	1 cut(s)	674
BslI	CCNNNNNNNGG	4 cut(s)	112, 707, 1004, 1046
BsmAI	GTCTC	2 cut(s)	958, 1338
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	768, 1207, 1250
BsoBI	CYCGRG	1 cut(s)	674
Bsp143I	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
Bsp19I	CCATGG	1 cut(s)	1407
BspACI	CCGC	3 cut(s)	176, 436, 1271
BspANI	GGCC	3 cut(s)	768, 1207, 1250
BspCNI	CTCAG	2 cut(s)	40, 623
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	2 cut(s)	427, 1447
BspPI	GGATC	5 cut(s)	19, 315, 368, 533, 546
BssECI	CCNNGG	6 cut(s)	377, 579, 882, 1003, 1020, 1407
BssMI	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
BssNAI	GTATAC	1 cut(s)	862
BssT1I	CCWWGG	4 cut(s)	377, 579, 1020, 1407
Bst1107I	GTATAC	1 cut(s)	862
Bst2UI	CCWGG	4 cut(s)	735, 871, 884, 1005
Bst4CI	ACNGT	2 cut(s)	1106, 1177
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	956
BstDEI	CTNAG	6 cut(s)	48, 610, 836, 1092, 1141, 1274
BstDSI	CCRYGG	1 cut(s)	1407
BstENI	CCTNNNNNAGG	2 cut(s)	705, 1044
BstF5I	GGATG	4 cut(s)	218, 700, 776, 1441
BstKTI	GATC	7 cut(s)	27, 286, 310, 376, 541, 934, 1091
BstMAI	GTCTC	2 cut(s)	958, 1338
BstMBI	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 644, 656
BstNI	CCWGG	4 cut(s)	735, 871, 884, 1005
BstPAI	GACNNNNGTC	1 cut(s)	970
BstSCI	CCNGG	4 cut(s)	733, 869, 882, 1003
BstSFI	CTRYAG	4 cut(s)	423, 1218, 1293, 1443
BstV1I	GCAGC	4 cut(s)	354, 409, 431, 634
BstX2I	RGATCY	2 cut(s)	538, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	586
BstYI	RGATCY	2 cut(s)	538, 1088
BstZ17I	GTATAC	1 cut(s)	862
Bsu36I	CCTNAGG	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	768, 1207, 1250
BtgI	CCRYGG	1 cut(s)	1407
BtsCI	GGATG	4 cut(s)	218, 700, 776, 1441
BtsIMutI	CAGTG	1 cut(s)	1435
Cac8I	GCNNGC	1 cut(s)	956
CaiI	CAGNNNCTG	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	698
DdeI	CTNAG	6 cut(s)	48, 610, 836, 1092, 1141, 1274
DpnI	GATC	7 cut(s)	26, 285, 309, 375, 540, 933, 1090
DpnII	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
Eco130I	CCWWGG	4 cut(s)	377, 579, 1020, 1407
Eco147I	AGGCCT	1 cut(s)	1207
Eco32I	GATATC	2 cut(s)	207, 430
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	3 cut(s)	474, 920, 1411
Eco81I	CCTNAGG	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	674
EcoNI	CCTNNNNNAGG	2 cut(s)	705, 1044
EcoRI	GAATTC	2 cut(s)	877, 1288
EcoRII	CCWGG	4 cut(s)	733, 869, 882, 1003
EcoRV	GATATC	2 cut(s)	207, 430
EcoT14I	CCWWGG	4 cut(s)	377, 579, 1020, 1407
EcoT22I	ATGCAT	1 cut(s)	924
ErhI	CCWWGG	4 cut(s)	377, 579, 1020, 1407
FauI	CCCGC	1 cut(s)	443
FblI	GTMKAC	2 cut(s)	861, 974
Fnu4HI	GCNGC	4 cut(s)	343, 420, 423, 648
FokI	GGATG	4 cut(s)	225, 707, 763, 1448
Fsp4HI	GCNGC	4 cut(s)	343, 420, 423, 648
FspBI	CTAG	6 cut(s)	315, 561, 849, 912, 1119, 1422
GluI	GCNGC	4 cut(s)	343, 420, 423, 648
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	4 cut(s)	710, 840, 853, 1065
HaeIII	GGCC	3 cut(s)	768, 1207, 1250
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HinfI	GANTC	5 cut(s)	332, 526, 746, 761, 887
HphI	GGTGA	4 cut(s)	424, 482, 644, 741
Hpy166II	GTNNAC	5 cut(s)	320, 862, 975, 1124, 1385
Hpy188I	TCNGA	4 cut(s)	49, 196, 493, 1392
Hpy8I	GTNNAC	5 cut(s)	320, 862, 975, 1124, 1385
HpyAV	CCTTC	5 cut(s)	222, 390, 1050, 1218, 1249
HpyCH4III	ACNGT	2 cut(s)	1106, 1177
HpyCH4V	TGCA	6 cut(s)	43, 425, 740, 922, 1352, 1445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 644, 656
HpyF3I	CTNAG	6 cut(s)	48, 610, 836, 1092, 1141, 1274
Kzo9I	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	4 cut(s)	354, 409, 431, 634
LweI	GCATC	2 cut(s)	924, 1404
MaeI	CTAG	6 cut(s)	315, 561, 849, 912, 1119, 1422
MaeIII	GTNAC	6 cut(s)	449, 470, 1097, 1114, 1163, 1309
MalI	GATC	7 cut(s)	26, 285, 309, 375, 540, 933, 1090
MboI	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
MboII	GAAGA	4 cut(s)	480, 926, 955, 1449
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	2 cut(s)	538, 1088
MlyI	GAGTC	2 cut(s)	326, 520
Mph1103I	ATGCAT	1 cut(s)	924
MroXI	GAANNNNTTC	2 cut(s)	400, 1012
MseI	TTAA	5 cut(s)	185, 233, 663, 1329, 1395
MslI	CAYNNNNRTG	1 cut(s)	1412
MspA1I	CMGCKG	2 cut(s)	422, 659
MspR9I	CCNGG	4 cut(s)	735, 871, 884, 1005
MunI	CAATTG	1 cut(s)	959
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	4 cut(s)	735, 871, 884, 1005
MwoI	GCNNNNNNNGC	3 cut(s)	406, 644, 656
NcoI	CCATGG	1 cut(s)	1407
NdeII	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	449, 470
NsiI	ATGCAT	1 cut(s)	924
PceI	AGGCCT	1 cut(s)	1207
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PctI	GAATGC	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	400, 1012
PfeI	GAWTC	3 cut(s)	746, 761, 887
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	344, 421, 424, 649
PleI	GAGTC	2 cut(s)	326, 520
PpsI	GAGTC	2 cut(s)	326, 520
PshAI	GACNNNNGTC	1 cut(s)	970
PsiI	TTATAA	2 cut(s)	132, 1062
Psp6I	CCWGG	4 cut(s)	733, 869, 882, 1003
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	4 cut(s)	733, 869, 882, 1003
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	2 cut(s)	427, 1447
PstNI	CAGNNNCTG	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	538, 1088
PvuII	CAGCTG	2 cut(s)	422, 659
RseI	CAYNNNNRTG	1 cut(s)	1412
SalI	GTCGAC	1 cut(s)	973
SaqAI	TTAA	5 cut(s)	185, 233, 663, 1329, 1395
SatI	GCNGC	4 cut(s)	343, 420, 423, 648
Sau3AI	GATC	7 cut(s)	24, 283, 307, 373, 538, 931, 1088
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	2 cut(s)	326, 520
ScrFI	CCNGG	4 cut(s)	735, 871, 884, 1005
SfaNI	GCATC	2 cut(s)	924, 1404
SfcI	CTRYAG	4 cut(s)	423, 1218, 1293, 1443
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	1412
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SpeI	ACTAGT	1 cut(s)	1118
SseBI	AGGCCT	1 cut(s)	1207
SsiI	CCGC	3 cut(s)	176, 436, 1271
SspMI	CTAG	6 cut(s)	315, 561, 849, 912, 1119, 1422
StuI	AGGCCT	1 cut(s)	1207
StyD4I	CCNGG	4 cut(s)	733, 869, 882, 1003
StyI	CCWWGG	4 cut(s)	377, 579, 1020, 1407
TaaI	ACNGT	2 cut(s)	1106, 1177
TaqI	TCGA	4 cut(s)	251, 310, 394, 974
TfiI	GAWTC	3 cut(s)	746, 761, 887
Tru1I	TTAA	5 cut(s)	185, 233, 663, 1329, 1395
Tru9I	TTAA	5 cut(s)	185, 233, 663, 1329, 1395
TscAI	CASTG	1 cut(s)	1435
TseFI	GTSAC	2 cut(s)	449, 470
TseI	GCWGC	4 cut(s)	342, 419, 422, 647
Tsp45I	GTSAC	2 cut(s)	449, 470
TspGWI	ACGGA	3 cut(s)	167, 531, 791
TspRI	CASTG	1 cut(s)	1435
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	698
XagI	CCTNNNNNAGG	2 cut(s)	705, 1044
XapI	RAATTY	9 cut(s)	61, 125, 716, 877, 1012, 1157, 1288, 1357, 1371
XbaI	TCTAGA	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1459
XmiI	GTMKAC	2 cut(s)	861, 974
XmnI	GAANNNNTTC	2 cut(s)	400, 1012
XspI	CTAG	6 cut(s)	315, 561, 849, 912, 1119, 1422
Zsp2I	ATGCAT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.