Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007763

Physical Location & Seq

Genomic Coordinates Forward (+)

2324878 .. 2327064

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGCAATGTCTGTAAATGTTTCTTCTTCTTCGTCTTCTGGGATCATAAACTCTCGTTTCGGTGTTTCATTGGAGCCAAAAGTTTCGCAAATTGGTTCGTTGAGGTTATTGGATCGTGTTCATGTTGCTCCTGTGTCTCTGAATCTATCTGGGAAGCGATCATCATCTGTTAAACCTTTAAACGCTGAACCAAAGACAAAGGATTCAATGATTCCTCTTGCGGCAACAATGGTAGCAGAAATTGCAGAGGAAGTTGAAGTGGTTGAGATTGAGGATTTTGAAGAGCTTGCTAAGAAGTTAGAGAATGCTTCACCTCTTGAGATTATGGACAAAGCTCTTGAGAAATACGGGAACGATATCGCCATTGCATTTAGTGGTGCAGAAGATGTTGCTCTTATTGAGTACGCTCATTTGACTGGGAGGCCATTTAGAGTATTTAGTTTGGATACAGGGAGGTTGAATCCTGAGACGTATCGGTTTTTCGATGCGGTGGAGAAGCACTATGGGATTAGGATTGAGTATATGTTTCCTGATTCTGTTGAGGTTCAAGGTTTGGTTAGGAGCAAGGGATTGTTCTCTTTTTATGAGGATGGTCATCAGGAGTGTTGCCGTGTTCGAAAGGTGAGACCTTTGAGGCGTGCTCTCAAGGGTTTAAAGGCTTGGATTACTGGTCAGAGGAAAGATCAATCTCCGGGGACAAGGTCTGAGATTCCGGTTGTTCAGGTTGATCCGGTGTTTGAAGGTTTGGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTTGAAGGGAATGATGTTTGGAACTTCTTGAGGACTATGGATGTTCCGGTTAACACATTGCATGCGGCAGGGTATATATCGATTGGATGTGAGCCTTGCACGAAAGCGGTTTTACCGGGTCAGCACGAGAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAAGCCAAGGAATGTGGACTTCACAAAGGGAATGTCAAAGAAAACTCCGATGATGCTAAAGTGAACGGGGAATCGAAATCCGCTGTTGCAGATATCTTTAAGAGTGAGAATCTTGTGACTTTGAGCAGGCAGGGGATTGAGAATTTGATGAAGTTGGAGAACCGTAAAGAGCCTTGGATCGTCGTGCTTTATGCTCCGTGGTGCCCCTTTTGTCAAGCCATGGAAGCATCGTATGATGAACTGGCGGATAAATTGGCTGGAAGTGGGATTAAGGTTGCCAAATTCAGAGCAGATGGTGACCAGAAGGAGTTTGCTAAGCAGGAATTGCAGCTCGGTAGCTTCCCTACCATTCTGGTTTTCCCTAAGAACTCATCGAGACCGATCAAGTATCCGTCTGAGAAGAGAGATGTTGAGTCTTTGACTTCGTTCTTGAATCTTGTCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

465

Amino Acids

51.71

Weight (kDa)

5.96

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPS_reduct	PF01507	120 - 299	8.1e-49	Phosphoadenosine phosphosulfate reductase domain
Thioredoxin	PF00085	369 - 461	3.2e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62180 AT1G62180 AT4G04610 AT4G21990 AT4G21990
fragaria_vesca	FvH4_3g01900
malus_domestica	MD03G1198900.v1.1 MD05G1348200.v1.1 MD10G1323000.v1.1 MD11G1215200.v1.1
prunus_persica	Prupe.4G019200_v2.0.a1 Prupe.4G216100_v2.0.a1
pyrus_communis	pycom03g15040 pycom05g31570 pycom10g27340
rosa_chinensis	RchiOBHm_Chr5g0002761
rosa_laevigata	RLG00000031056
rosa_multiflora	Rmu_sc0013603.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073140
rosa_rugosa	Rorug04G0399100
rosa_samantha	Rh5AG022200 Rh5BG025100 Rh5DG023500
rosa_wichuraiana	Rw5G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1152
AciI	CCGC	6 cut(s)	221, 488, 857, 899, 1032, 1196
AclWI	GGATC	4 cut(s)	50, 120, 722, 1136
AcsI	RAATTY	2 cut(s)	1093, 1232
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	8 cut(s)	207, 257, 281, 460, 548, 740, 797, 1384
AluBI	AGCT	4 cut(s)	286, 335, 1282, 1290
AluI	AGCT	4 cut(s)	286, 335, 1282, 1290
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	4 cut(s)	141, 461, 619, 1321
AlwI	GGATC	4 cut(s)	50, 120, 722, 1136
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	1279
ApoI	RAATTY	2 cut(s)	1093, 1232
ArsI	GACNNNNNNTTYG	2 cut(s)	969, 1001
AsuC2I	CCSGG	2 cut(s)	693, 909
AsuHPI	GGTGA	4 cut(s)	303, 634, 781, 1259
AsuII	TTCGAA	1 cut(s)	616
BaeGI	GKGCMC	1 cut(s)	1157
BanI	GGYRCC	1 cut(s)	1152
BauI	CACGAG	1 cut(s)	917
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	1291
BccI	CCATC	4 cut(s)	584, 743, 927, 1238
BceAI	ACGGC	1 cut(s)	594
BciVI	GTATCC	2 cut(s)	439, 1350
BcnI	CCSGG	2 cut(s)	693, 909
BcoDI	GTCTC	4 cut(s)	141, 461, 619, 1321
BfuI	GTATCC	2 cut(s)	439, 1350
BisI	GCNGC	3 cut(s)	222, 858, 1280
BlpI	GCTNAGC	1 cut(s)	1266
BlsI	GCNGC	3 cut(s)	223, 859, 1281
Bme1390I	CCNGG	2 cut(s)	693, 909
BmiI	GGNNCC	2 cut(s)	75, 1154
BmrFI	CCNGG	2 cut(s)	693, 909
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	4 cut(s)	475, 937, 994, 1187
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
Bpu1102I	GCTNAGC	1 cut(s)	1266
Bpu14I	TTCGAA	1 cut(s)	616
BpuEI	CTTGAG	4 cut(s)	338, 359, 629, 841
BpuMI	CCSGG	2 cut(s)	693, 909
Bsa29I	ATCGAT	1 cut(s)	872
BsaBI	GATNNNNATC	2 cut(s)	163, 594
BsaI	GGTCTC	2 cut(s)	619, 1321
BsaJI	CCNNGG	5 cut(s)	692, 957, 1124, 1148, 1170
BsaWI	WCCGGW	4 cut(s)	712, 730, 781, 838
Bse1I	ACTGG	3 cut(s)	421, 673, 1197
Bse3DI	GCAATG	3 cut(s)	12, 363, 848
Bse8I	GATNNNNATC	2 cut(s)	163, 594
BseCI	ATCGAT	1 cut(s)	872
BseDI	CCNNGG	5 cut(s)	692, 957, 1124, 1148, 1170
BseGI	GGATG	4 cut(s)	595, 754, 838, 884
BseJI	GATNNNNATC	2 cut(s)	163, 594
BseMI	GCAATG	3 cut(s)	12, 363, 848
BseMII	CTCAG	3 cut(s)	456, 696, 1338
BseNI	ACTGG	3 cut(s)	421, 673, 1197
BseSI	GKGCMC	1 cut(s)	1157
BseXI	GCAGC	1 cut(s)	1291
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	424
BshNI	GGYRCC	1 cut(s)	1152
BshVI	ATCGAT	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	6 cut(s)	692, 713, 731, 782, 839, 908
BslFI	GGGAC	1 cut(s)	709
BsmAI	GTCTC	4 cut(s)	141, 461, 619, 1321
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	424
Bso31I	GGTCTC	2 cut(s)	619, 1321
Bsp119I	TTCGAA	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	643, 1157
Bsp143I	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
Bsp1720I	GCTNAGC	1 cut(s)	1266
Bsp19I	CCATGG	1 cut(s)	1170
BspACI	CCGC	6 cut(s)	221, 488, 857, 899, 1032, 1196
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	3 cut(s)	457, 697, 1339
BspDI	ATCGAT	1 cut(s)	872
BspLI	GGNNCC	2 cut(s)	75, 1154
BspPI	GGATC	4 cut(s)	50, 120, 722, 1136
BspQI	GCTCTTC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	1152
BspTNI	GGTCTC	2 cut(s)	619, 1321
BsrDI	GCAATG	3 cut(s)	12, 363, 848
BsrI	ACTGG	3 cut(s)	421, 673, 1197
BssECI	CCNNGG	5 cut(s)	692, 957, 1124, 1148, 1170
BssMI	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
BssSI	CACGAG	1 cut(s)	917
BssT1I	CCWWGG	3 cut(s)	957, 1124, 1170
Bst2BI	CACGAG	1 cut(s)	917
Bst4CI	ACNGT	1 cut(s)	1115
Bst6I	CTCTTC	2 cut(s)	276, 1346
BstAPI	GCANNNNNTGC	2 cut(s)	242, 1276
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	4 cut(s)	288, 639, 855, 1079
BstDEI	CTNAG	6 cut(s)	291, 465, 705, 1266, 1314, 1347
BstDSI	CCRYGG	2 cut(s)	1148, 1170
BstEII	GGTNACC	1 cut(s)	1247
BstF5I	GGATG	4 cut(s)	595, 754, 838, 884
BstKTI	GATC	7 cut(s)	45, 115, 161, 685, 730, 1131, 1335
BstMAI	GTCTC	4 cut(s)	141, 461, 619, 1321
BstMBI	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 1175, 1276
BstNSI	RCATGY	1 cut(s)	857
BstPI	GGTNACC	1 cut(s)	1247
BstSCI	CCNGG	2 cut(s)	691, 907
BstSLI	GKGCMC	1 cut(s)	1157
BstV1I	GCAGC	1 cut(s)	1291
BstV2I	GAAGAC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	872
BsuI	GTATCC	2 cut(s)	439, 1350
BsuRI	GGCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	872
BtgI	CCRYGG	2 cut(s)	1148, 1170
BtsCI	GGATG	4 cut(s)	595, 754, 838, 884
Cac8I	GCNNGC	4 cut(s)	288, 639, 855, 1079
ClaI	ATCGAT	1 cut(s)	872
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	946, 981
CviAII	CATG	3 cut(s)	122, 854, 1171
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	6 cut(s)	291, 465, 705, 1266, 1314, 1347
DpnI	GATC	7 cut(s)	44, 114, 160, 684, 729, 1130, 1334
DpnII	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
DraI	TTTAAA	2 cut(s)	180, 654
Eam1104I	CTCTTC	2 cut(s)	276, 1346
EarI	CTCTTC	2 cut(s)	276, 1346
EciI	GGCGGA	1 cut(s)	1211
Eco130I	CCWWGG	3 cut(s)	957, 1124, 1170
Eco31I	GGTCTC	2 cut(s)	619, 1321
Eco32I	GATATC	2 cut(s)	358, 1045
Eco91I	GGTNACC	1 cut(s)	1247
EcoO65I	GGTNACC	1 cut(s)	1247
EcoRV	GATATC	2 cut(s)	358, 1045
EcoT14I	CCWWGG	3 cut(s)	957, 1124, 1170
ErhI	CCWWGG	3 cut(s)	957, 1124, 1170
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	3 cut(s)	125, 857, 1174
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	3 cut(s)	121, 853, 1170
Fnu4HI	GCNGC	3 cut(s)	222, 858, 1280
FokI	GGATG	4 cut(s)	602, 761, 845, 891
Fsp4HI	GCNGC	3 cut(s)	222, 858, 1280
GluI	GCNGC	3 cut(s)	222, 858, 1280
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	6 cut(s)	692, 713, 731, 782, 839, 908
Hin1II	CATG	3 cut(s)	125, 857, 1174
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HpaI	GTTAAC	1 cut(s)	844
HpaII	CCGG	6 cut(s)	692, 713, 731, 782, 839, 908
HphI	GGTGA	4 cut(s)	303, 634, 781, 1259
Hpy166II	GTNNAC	3 cut(s)	844, 968, 1015
Hpy188I	TCNGA	7 cut(s)	141, 675, 706, 1000, 1238, 1348, 1394
Hpy188III	TCNNGA	8 cut(s)	317, 338, 464, 530, 599, 820, 1326, 1381
Hpy8I	GTNNAC	3 cut(s)	844, 968, 1015
Hpy99I	CGWCG	1 cut(s)	1136
HpyAV	CCTTC	4 cut(s)	734, 791, 920, 1249
HpyCH4III	ACNGT	1 cut(s)	1115
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	7 cut(s)	245, 368, 380, 853, 891, 1040, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 1175, 1276
HpyF3I	CTNAG	6 cut(s)	291, 465, 705, 1266, 1314, 1347
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	125, 857, 1174
KspAI	GTTAAC	1 cut(s)	844
Kzo9I	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	4 cut(s)	73, 133, 561, 1150
Lsp1109I	GCAGC	1 cut(s)	1291
LweI	GCATC	4 cut(s)	475, 937, 994, 1187
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	2 cut(s)	1066, 1247
MalI	GATC	7 cut(s)	44, 114, 160, 684, 729, 1130, 1334
MboI	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
MboII	GAAGA	8 cut(s)	15, 18, 21, 27, 293, 395, 956, 1363
MhlI	GDGCHC	2 cut(s)	643, 1157
MluCI	AATT	6 cut(s)	90, 240, 1093, 1202, 1232, 1274
MlyI	GAGTC	1 cut(s)	1373
MmeI	TCCRAC	1 cut(s)	1086
MseI	TTAA	6 cut(s)	171, 179, 653, 843, 1050, 1221
MspA1I	CMGCKG	1 cut(s)	1034
MspI	CCGG	6 cut(s)	692, 713, 731, 782, 839, 908
MspR9I	CCNGG	2 cut(s)	693, 909
Mva1269I	GAATGC	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	242, 1175, 1276
NciI	CCSGG	2 cut(s)	693, 909
NcoI	CCATGG	1 cut(s)	1170
NdeII	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
NlaIII	CATG	3 cut(s)	125, 857, 1174
NlaIV	GGNNCC	2 cut(s)	75, 1154
NmuCI	GTSAC	2 cut(s)	1066, 1247
NspI	RCATGY	1 cut(s)	857
NspV	TTCGAA	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	276
PctI	GAATGC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	700
PkrI	GCNGC	3 cut(s)	223, 859, 1281
PleI	GAGTC	1 cut(s)	1372
PpsI	GAGTC	1 cut(s)	1372
PspEI	GGTNACC	1 cut(s)	1247
PspN4I	GGNNCC	2 cut(s)	75, 1154
PsyI	GACNNNGTC	1 cut(s)	700
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	6 cut(s)	171, 179, 653, 843, 1050, 1221
SatI	GCNGC	3 cut(s)	222, 858, 1280
Sau3AI	GATC	7 cut(s)	42, 112, 158, 682, 727, 1128, 1332
SchI	GAGTC	1 cut(s)	1373
ScrFI	CCNGG	2 cut(s)	693, 909
SduI	GDGCHC	2 cut(s)	643, 1157
SfaNI	GCATC	4 cut(s)	475, 937, 994, 1187
SfuI	TTCGAA	1 cut(s)	616
SmlI	CTYRAG	4 cut(s)	317, 338, 644, 820
SmoI	CTYRAG	4 cut(s)	317, 338, 644, 820
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	6 cut(s)	90, 240, 1093, 1202, 1232, 1274
SsiI	CCGC	6 cut(s)	221, 488, 857, 899, 1032, 1196
StyD4I	CCNGG	2 cut(s)	691, 907
StyI	CCWWGG	3 cut(s)	957, 1124, 1170
TaaI	ACNGT	1 cut(s)	1115
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	5 cut(s)	483, 616, 872, 1025, 1325
TaqII	GACCGA	1 cut(s)	1345
TasI	AATT	6 cut(s)	90, 240, 1093, 1202, 1232, 1274
TauI	GCSGC	2 cut(s)	224, 860
Tru1I	TTAA	6 cut(s)	171, 179, 653, 843, 1050, 1221
Tru9I	TTAA	6 cut(s)	171, 179, 653, 843, 1050, 1221
TseFI	GTSAC	2 cut(s)	1066, 1247
TseI	GCWGC	1 cut(s)	1279
Tsp45I	GTSAC	2 cut(s)	1066, 1247
TspDTI	ATGAA	4 cut(s)	57, 110, 1115, 1203
TspGWI	ACGGA	2 cut(s)	1137, 1332
Tth111I	GACNNNGTC	1 cut(s)	700
XapI	RAATTY	2 cut(s)	1093, 1232
XceI	RCATGY	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.