Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1658029 .. 1661119

Gene Structure 3091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG023500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAGGTGGAGGACTATGAGAAATTGGCTAAGGAGCTTGAGAGTGCTTCTCCTCTTGAGATCATGGACAAGGCTCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCAGTGGAGCTGAGGATGTTGCTTTGATTGAGTACGCACATTTGACTGGTAGACCCTACAGGGTGTTCAGTTTGGATACTGGGAGGCTGAACCCAGAAACATATCAGTTCTTTGACACAGTTGAGAAGCACTATGGTATCCACATTGAATACATGTTTCCTGATTCTGTTGAAGTTCAGGCATTAGTAAGGAGCAAAGGGCTTTTCTCTTTCTATGAGGATGGACACCAGGAATGCTGCCGTGTGAGGAAGGTGAGACCCCTCCGGAGAGCCCTCAAGGGTCTTCGTGCTTGGATCACTGGCCAAAGGAAAGATCAATCTCCAGGTACCAGGTCTGAAGTTCCTGTTGTCCAGGTTGACCCCGTTTTTGAGGGTTTGGATGGTGGAGCTGGCAGCCTGGTGAAGTGGAACCCAGTTGCTAATGTCGAGGGTGTTGATGTATGGAACTTCCTTCGTGCCATGAACGTGCCTGTGAATTCACTGCACTCCCAGGGATACATTTCAATTGGTTGTGAGCCATGCACAAGGTCAGTCCTACCGGGACAACATGAGAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAGGCAAAGGAGTGTGGTCTTCACAAAGGCAATCTCAAACAGGAAGATGGTCAAGCAAATGGCAATGGAAATGGAGCTGCCAATCCCAACGGAACAGCCACAGCTGACATTTTCACTTCCCAGAATTTGGTCACCTTAAGCAGGCCTGGAATAGAGAATTTGGCAAGACTTGAGAACCGGCAAGAACCTTGGATTGTAGTACTCTATGCGCCTTGGTGCCAATTCTGTCAGGCAATGGAAGCATCATACGATGAGTTGGCCAACAAGATGGCAGGGAGTGGTGTGAAGGTAGGAAAGTTCAGAGCAGATGGTGAGCAAAAGGAGTATGCTCAGAAAGAACTTCAACTCGGAAGCTTCCCTACAGTACTTTTCTTCCCGAAACACTCTTCTCGGCCAATCAAGTACCCATCAGAGAAGAGGGATGTTGATTCGCTGATGGCTTTCATCAATGCCCTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

383

Amino Acids

42.95

Weight (kDa)

5.74

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPS_reduct	PF01507	33 - 212	1.4e-48	Phosphoadenosine phosphosulfate reductase domain
Thioredoxin	PF00085	287 - 380	1.3e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62180 AT1G62180 AT4G04610 AT4G21990 AT4G21990
fragaria_vesca	FvH4_3g01900
malus_domestica	MD03G1198900.v1.1 MD05G1348200.v1.1 MD10G1323000.v1.1 MD11G1215200.v1.1
prunus_persica	Prupe.4G019200_v2.0.a1 Prupe.4G216100_v2.0.a1
pyrus_communis	pycom03g15040 pycom05g31570 pycom10g27340
rosa_chinensis	RchiOBHm_Chr5g0002761
rosa_laevigata	RLG00000031056
rosa_multiflora	Rmu_sc0013603.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073140
rosa_rugosa	Rorug04G0399100
rosa_samantha	Rh5AG022200 Rh5BG025100 Rh5DG023500
rosa_wichuraiana	Rw5G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	2 cut(s)	434, 906
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	372
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	3 cut(s)	409, 948, 1082
AcsI	RAATTY	4 cut(s)	83, 583, 814, 847
AcuI	CTGAAG	2 cut(s)	94, 465
AfaI	GTAC	5 cut(s)	143, 436, 891, 1056, 1094
AfiI	CCNNNNNNNGG	2 cut(s)	817, 831
AflII	CTTAAG	1 cut(s)	826
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	257, 281, 612, 1034
AjnI	CCWGG	7 cut(s)	336, 430, 437, 459, 504, 597, 835
AluBI	AGCT	6 cut(s)	37, 119, 497, 767, 794, 1044
AluI	AGCT	6 cut(s)	37, 119, 497, 767, 794, 1044
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	4 cut(s)	409, 833, 948, 1082
ApeKI	GCWGC	3 cut(s)	345, 501, 767
ApoI	RAATTY	4 cut(s)	83, 583, 814, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp718I	GGTACC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	901
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	4 cut(s)	373, 520, 814, 1013
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BalI	TGGCCA	2 cut(s)	411, 950
BanI	GGYRCC	2 cut(s)	434, 906
BanII	GRGCYC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	1033, 1065
BbsI	GAAGAC	2 cut(s)	383, 701
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	332, 513, 754
BccI	CCATC	7 cut(s)	323, 482, 731, 952, 992, 1105, 1120
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	7 cut(s)	338, 432, 439, 461, 506, 599, 837
BciVI	GTATCC	3 cut(s)	178, 257, 596
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	2 cut(s)	166, 1050
BfrI	CTTAAG	1 cut(s)	826
BfuI	GTATCC	3 cut(s)	178, 257, 596
BisI	GCNGC	3 cut(s)	346, 502, 768
BlsI	GCNGC	3 cut(s)	347, 503, 769
BmcAI	AGTACT	2 cut(s)	891, 1056
Bme1390I	CCNGG	8 cut(s)	338, 432, 439, 461, 506, 599, 648, 837
BmiI	GGNNCC	3 cut(s)	436, 518, 908
BmrFI	CCNGG	8 cut(s)	338, 432, 439, 461, 506, 599, 648, 837
BmrI	ACTGGG	2 cut(s)	198, 515
BmsI	GCATC	2 cut(s)	676, 941
BmuI	ACTGGG	2 cut(s)	198, 515
BpiI	GAAGAC	2 cut(s)	383, 701
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	2 cut(s)	30, 120
BpuEI	CTTGAG	5 cut(s)	59, 77, 98, 368, 881
BpuMI	CCSGG	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	5 cut(s)	597, 598, 690, 878, 902
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 831
Bse118I	RCCGGY	1 cut(s)	867
Bse1I	ACTGG	4 cut(s)	160, 193, 412, 521
Bse3DI	GCAATG	3 cut(s)	96, 760, 930
BseAI	TCCGGA	1 cut(s)	372
BseBI	CCWGG	7 cut(s)	338, 432, 439, 461, 506, 599, 837
BseDI	CCNNGG	5 cut(s)	597, 598, 690, 878, 902
BseGI	GGATG	5 cut(s)	130, 334, 493, 691, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	817, 831
BseMI	GCAATG	3 cut(s)	96, 760, 930
BseMII	CTCAG	2 cut(s)	111, 1034
BseNI	ACTGG	4 cut(s)	160, 193, 412, 521
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	332, 513, 754
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	4 cut(s)	411, 835, 950, 1084
BshNI	GGYRCC	2 cut(s)	434, 906
BsiSI	CCGG	3 cut(s)	373, 647, 868
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	2 cut(s)	817, 831
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	4 cut(s)	411, 835, 950, 1084
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	60, 402, 421
BspANI	GGCC	4 cut(s)	411, 835, 950, 1084
BspCNI	CTCAG	2 cut(s)	112, 1033
BspEI	TCCGGA	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	436, 518, 908
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	2 cut(s)	434, 906
BspTI	CTTAAG	1 cut(s)	826
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	3 cut(s)	96, 760, 930
BsrFI	RCCGGY	1 cut(s)	867
BsrI	ACTGG	4 cut(s)	160, 193, 412, 521
BssAI	RCCGGY	1 cut(s)	867
BssECI	CCNNGG	5 cut(s)	597, 598, 690, 878, 902
BssMI	GATC	3 cut(s)	60, 402, 421
BssT1I	CCWWGG	3 cut(s)	690, 878, 902
Bst2UI	CCWGG	7 cut(s)	338, 432, 439, 461, 506, 599, 837
Bst4CI	ACNGT	2 cut(s)	229, 1054
Bst6I	CTCTTC	2 cut(s)	1081, 1100
BstAFI	CTTAAG	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	499, 833
BstDEI	CTNAG	3 cut(s)	30, 120, 1020
BstEII	GGTNACC	1 cut(s)	820
BstENI	CCTNNNNNAGG	1 cut(s)	829
BstF5I	GGATG	5 cut(s)	130, 334, 493, 691, 1117
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	3 cut(s)	63, 405, 424
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	60, 402, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstNI	CCWGG	7 cut(s)	338, 432, 439, 461, 506, 599, 837
BstNSI	RCATGY	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	820
BstSCI	CCNGG	8 cut(s)	336, 430, 437, 459, 504, 597, 646, 835
BstSFI	CTRYAG	2 cut(s)	166, 1050
BstV1I	GCAGC	3 cut(s)	332, 513, 754
BstV2I	GAAGAC	2 cut(s)	383, 701
BstXI	CCANNNNNNTGG	1 cut(s)	958
BsuI	GTATCC	3 cut(s)	178, 257, 596
BsuRI	GGCC	4 cut(s)	411, 835, 950, 1084
BtsCI	GGATG	5 cut(s)	130, 334, 493, 691, 1117
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	3 cut(s)	118, 405, 587
Cac8I	GCNNGC	2 cut(s)	499, 833
CfoI	GCGC	1 cut(s)	901
Cfr10I	RCCGGY	1 cut(s)	867
CsiI	ACCWGGT	1 cut(s)	437
Csp6I	GTAC	5 cut(s)	142, 435, 890, 1055, 1093
CviAII	CATG	5 cut(s)	64, 262, 568, 627, 656
CviQI	GTAC	5 cut(s)	142, 435, 890, 1055, 1093
DdeI	CTNAG	3 cut(s)	30, 120, 1020
DpnI	GATC	3 cut(s)	62, 404, 423
DpnII	GATC	3 cut(s)	60, 402, 421
EaeI	YGGCCR	3 cut(s)	409, 948, 1082
Eam1104I	CTCTTC	2 cut(s)	1081, 1100
EarI	CTCTTC	2 cut(s)	1081, 1100
Eco130I	CCWWGG	3 cut(s)	690, 878, 902
Eco147I	AGGCCT	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	94, 465
Eco91I	GGTNACC	1 cut(s)	820
EcoNI	CCTNNNNNAGG	1 cut(s)	829
EcoO65I	GGTNACC	1 cut(s)	820
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	7 cut(s)	336, 430, 437, 459, 504, 597, 835
EcoT14I	CCWWGG	3 cut(s)	690, 878, 902
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	3 cut(s)	690, 878, 902
FaeI	CATG	5 cut(s)	67, 265, 571, 630, 659
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	5 cut(s)	63, 261, 567, 626, 655
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	346, 502, 768
FokI	GGATG	5 cut(s)	137, 341, 500, 698, 1124
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	3 cut(s)	346, 502, 768
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	3 cut(s)	346, 502, 768
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	411, 835, 950, 1084
HapII	CCGG	3 cut(s)	373, 647, 868
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	5 cut(s)	67, 265, 571, 630, 659
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	1042
HinfI	GANTC	2 cut(s)	272, 1118
HpaII	CCGG	3 cut(s)	373, 647, 868
HphI	GGTGA	4 cut(s)	373, 520, 814, 1013
Hpy166II	GTNNAC	2 cut(s)	161, 466
Hpy188I	TCNGA	5 cut(s)	445, 992, 1023, 1040, 1102
Hpy188III	TCNNGA	5 cut(s)	56, 77, 269, 373, 1066
Hpy8I	GTNNAC	2 cut(s)	161, 466
HpyAV	CCTTC	6 cut(s)	118, 352, 569, 659, 663, 970
HpyCH4III	ACNGT	2 cut(s)	229, 1054
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	2 cut(s)	592, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	3 cut(s)	30, 120, 1020
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	5 cut(s)	67, 265, 571, 630, 659
HspAI	GCGC	1 cut(s)	899
Kpn2I	TCCGGA	1 cut(s)	372
KpnI	GGTACC	1 cut(s)	438
Kzo9I	GATC	3 cut(s)	60, 402, 421
LmnI	GCTCC	5 cut(s)	34, 116, 300, 494, 764
Lsp1109I	GCAGC	3 cut(s)	332, 513, 754
LweI	GCATC	2 cut(s)	676, 941
MabI	ACCWGGT	1 cut(s)	437
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	3 cut(s)	62, 404, 423
MboI	GATC	3 cut(s)	60, 402, 421
MboII	GAAGA	6 cut(s)	383, 701, 746, 1054, 1068, 1117
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	382
MlsI	TGGCCA	2 cut(s)	411, 950
MluCI	AATT	7 cut(s)	23, 83, 583, 612, 814, 847, 911
MluNI	TGGCCA	2 cut(s)	411, 950
Mox20I	TGGCCA	2 cut(s)	411, 950
MroI	TCCGGA	1 cut(s)	372
MscI	TGGCCA	2 cut(s)	411, 950
MseI	TTAA	1 cut(s)	827
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	2 cut(s)	411, 950
MspA1I	CMGCKG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	826
MspI	CCGG	3 cut(s)	373, 647, 868
MspR9I	CCNGG	8 cut(s)	338, 432, 439, 461, 506, 599, 648, 837
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	7 cut(s)	338, 432, 439, 461, 506, 599, 837
MwoI	GCNNNNNNNGC	1 cut(s)	929
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	3 cut(s)	60, 402, 421
NlaIII	CATG	5 cut(s)	67, 265, 571, 630, 659
NlaIV	GGNNCC	3 cut(s)	436, 518, 908
NmeAIII	GCCGAG	1 cut(s)	1060
NmuCI	GTSAC	1 cut(s)	820
NspI	RCATGY	1 cut(s)	265
PasI	CCCWGGG	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	835
PciI	ACATGT	1 cut(s)	261
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	272, 1118
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	347, 503, 769
PscI	ACATGT	1 cut(s)	261
Psp6I	CCWGG	7 cut(s)	336, 430, 437, 459, 504, 597, 835
PspEI	GGTNACC	1 cut(s)	820
PspGI	CCWGG	7 cut(s)	336, 430, 437, 459, 504, 597, 835
PspN4I	GGNNCC	3 cut(s)	436, 518, 908
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	5 cut(s)	143, 436, 891, 1056, 1094
RsaNI	GTAC	5 cut(s)	142, 435, 890, 1055, 1093
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	827
SatI	GCNGC	3 cut(s)	346, 502, 768
Sau3AI	GATC	3 cut(s)	60, 402, 421
ScaI	AGTACT	2 cut(s)	891, 1056
ScrFI	CCNGG	8 cut(s)	338, 432, 439, 461, 506, 599, 648, 837
SduI	GDGCHC	1 cut(s)	382
SexAI	ACCWGGT	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	676, 941
SfcI	CTRYAG	2 cut(s)	166, 1050
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	6 cut(s)	38, 56, 77, 383, 826, 860
SmoI	CTYRAG	6 cut(s)	38, 56, 77, 383, 826, 860
Sse9I	AATT	7 cut(s)	23, 83, 583, 612, 814, 847, 911
SseBI	AGGCCT	1 cut(s)	835
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	8 cut(s)	336, 430, 437, 459, 504, 597, 646, 835
StyI	CCWWGG	3 cut(s)	690, 878, 902
TaaI	ACNGT	2 cut(s)	229, 1054
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	534
TasI	AATT	7 cut(s)	23, 83, 583, 612, 814, 847, 911
TatI	WGTACW	2 cut(s)	889, 1054
TfiI	GAWTC	2 cut(s)	272, 1118
Tru1I	TTAA	1 cut(s)	827
Tru9I	TTAA	1 cut(s)	827
TscAI	CASTG	3 cut(s)	118, 412, 594
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	3 cut(s)	345, 501, 767
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	2 cut(s)	584, 1123
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	3 cut(s)	118, 412, 594
Van91I	CCANNNNNTGG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	826
XagI	CCTNNNNNAGG	1 cut(s)	829
XapI	RAATTY	4 cut(s)	83, 583, 814, 847
XceI	RCATGY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	160
ZrmI	AGTACT	2 cut(s)	891, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.