Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007763

Physical Location & Seq

Genomic Coordinates Reverse (-)

16412130 .. 16414175

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAACCGTGACACTCGTCAACTGTTTCCCGTACCCCATCTTAATGCTTTTCCTGTGCCCTCCACGCCAACACATTACAGACCCTCTCTCTCTCTCTCTCTAAGCATTCAAATTTCTCTCATGGCCTTCGTAGCTACGTCTCCTTCCACCCAATCATTGCTTCACGCTTCGCTATCTTCCCACGAGCCCAAAGCTCAATGGACATCTTCTGTGAATCCGTCGGATCAATTTTCGTTTGCATCGACGGCTGTGGCCTCTTTCCAGAGACCATCATTGGCAAAACCCCTTTCCGCAGAATCGAAGAGGAGCAAATCAGTTGTTCCGCTTGCTGCAAAAATGGCATCTCCAGATGTTGACAACAATGTGGTAGGAGAAGATTACGAAAAACTGGCAAAAGAGTTGGAAAACGCTTCCCCACTTCAAATCATGAAGAAGGCTCTTGACAAATTTGGGAATGACATTGCCATTGCTTTCAGCGGAGCTGAGGACGTCGCCTTGATCGAGTATGCCAAACTAACAGGTCGGCCCTTCAGGGTATTCAGCCTGGATACTGGGAGGCTTAACCCAGAGACGTACCAGTTTTTTGACACTGTTGAGAAGCACTATGGCATTCACATTGAATACATGTTTCCTGATGCTGTTGAAGTTCAAGCACTGGTGCGAGGCAAAGGACTGTTCTCATTCTATGAAGACGGCCACCAGGAGTGCTGCAGGGTAAGGAAGGTTAGGCCTTTAAGGCGAGCCCTTAAGGGTCTTCGTGCCTGGATCACTGGGCAGAGAAAAGACCAGTCTCCTGGCACAAGAGCTGAAATTCCGGTTGTCCAGGTGGACCCATCGTTTGAAGGAATTGATGGTGGAATTGGCAGCTTGGTGAAATGGAATCCTGTTGCCAACGTGGAAGGCCATGACATATGGAACTTCCTCCAAGTCATGAATGTACCTGTCAATCCTTTGCACTCGCAAGGATACATTTCAATCGGGTGCGAGCCATGCACAAGGCCGGTGCTGCCAGGGCAGCATGAAAGGGAGGGAAGATGGTGGTGGGAGGATGCTAAGGCAAAGGAATGTGGCCTCCATAACGGAAATATCAAAGAAAAAGAGGCGCTGCACCTCAATGGCAATGGGAATGGGATCGATCAACAACAAATGGGAGTGCCAATGTCCCAGACATCTTTAACAGCAAGAACTTGGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

400

Amino Acids

44.29

Weight (kDa)

7.2

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62180 AT1G62180 AT4G04610 AT4G21990 AT4G21990
fragaria_vesca	FvH4_3g01900
malus_domestica	MD03G1198900.v1.1 MD05G1348200.v1.1 MD10G1323000.v1.1 MD11G1215200.v1.1
prunus_persica	Prupe.4G019200_v2.0.a1 Prupe.4G216100_v2.0.a1
pyrus_communis	pycom03g15040 pycom05g31570 pycom10g27340
rosa_chinensis	RchiOBHm_Chr5g0002761
rosa_laevigata	RLG00000031056
rosa_multiflora	Rmu_sc0013603.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073140
rosa_rugosa	Rorug04G0399100
rosa_samantha	Rh5AG022200 Rh5BG025100 Rh5DG023500
rosa_wichuraiana	Rw5G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
AciI	CCGC	3 cut(s)	291, 323, 477
AclWI	GGATC	3 cut(s)	231, 773, 1139
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	3 cut(s)	111, 446, 810
AcuI	CTGAAG	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	3 cut(s)	33, 575, 939
AflII	CTTAAG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	7 cut(s)	110, 422, 620, 644, 650, 842, 975
AjnI	CCWGG	6 cut(s)	543, 699, 761, 793, 822, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AloI	GAACNNNNNNTCC	1 cut(s)	1177
AluBI	AGCT	5 cut(s)	134, 194, 482, 806, 867
AluI	AGCT	5 cut(s)	134, 194, 482, 806, 867
Alw26I	GTCTC	4 cut(s)	144, 259, 563, 795
AlwI	GGATC	3 cut(s)	231, 773, 1139
AoxI	GGCC	8 cut(s)	123, 252, 524, 694, 728, 901, 998, 1069
ApeKI	GCWGC	6 cut(s)	329, 708, 864, 1006, 1015, 1105
ApoI	RAATTY	3 cut(s)	111, 446, 810
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AspLEI	GCGC	1 cut(s)	1105
AspS9I	GGNCC	2 cut(s)	525, 829
AsuHPI	GGTGA	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	2 cut(s)	189, 745
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	696, 746
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	6 cut(s)	316, 695, 876, 993, 1027, 1092
BccI	CCATC	5 cut(s)	45, 277, 841, 845, 1029
BceAI	ACGGC	2 cut(s)	261, 709
BciT130I	CCWGG	6 cut(s)	545, 701, 763, 795, 824, 1011
BciVI	GTATCC	2 cut(s)	541, 959
BcoDI	GTCTC	4 cut(s)	144, 259, 563, 795
BfmI	CTRYAG	1 cut(s)	709
BfoI	RGCGCY	1 cut(s)	1106
BfrI	CTTAAG	1 cut(s)	746
BfuI	GTATCC	2 cut(s)	541, 959
BglI	GCCNNNNNGGC	1 cut(s)	736
BisI	GCNGC	6 cut(s)	330, 709, 865, 1007, 1016, 1106
BlsI	GCNGC	6 cut(s)	331, 710, 866, 1008, 1017, 1107
Bme1390I	CCNGG	6 cut(s)	545, 701, 763, 795, 824, 1011
Bme18I	GGWCC	1 cut(s)	829
BmgT120I	GGNCC	2 cut(s)	525, 829
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	6 cut(s)	545, 701, 763, 795, 824, 1011
BmrI	ACTGGG	2 cut(s)	561, 780
BmsI	GCATC	4 cut(s)	248, 350, 625, 1039
BmuI	ACTGGG	2 cut(s)	561, 780
BoxI	GACNNNNGTC	1 cut(s)	15
BpiI	GAAGAC	2 cut(s)	696, 746
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	2 cut(s)	483, 1053
Bsa29I	ATCGAT	1 cut(s)	1134
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	1010
BsaWI	WCCGGW	1 cut(s)	814
Bse118I	RCCGGY	1 cut(s)	1000
Bse1I	ACTGG	6 cut(s)	393, 556, 577, 660, 775, 787
Bse3DI	GCAATG	4 cut(s)	155, 459, 465, 1126
BseBI	CCWGG	6 cut(s)	545, 701, 763, 795, 824, 1011
BseCI	ATCGAT	1 cut(s)	1134
BseDI	CCNNGG	1 cut(s)	1010
BseGI	GGATG	1 cut(s)	1054
BseMI	GCAATG	4 cut(s)	155, 459, 465, 1126
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	6 cut(s)	393, 556, 577, 660, 775, 787
BseRI	GAGGAG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	6 cut(s)	316, 695, 876, 993, 1027, 1092
BsgI	GTGCAG	1 cut(s)	1091
BshFI	GGCC	8 cut(s)	125, 254, 526, 696, 730, 903, 1000, 1071
BshVI	ATCGAT	1 cut(s)	1134
BsiSI	CCGG	2 cut(s)	815, 1001
BslFI	GGGAC	1 cut(s)	1147
BsmAI	GTCTC	4 cut(s)	144, 259, 563, 795
BsmBI	CGTCTC	2 cut(s)	144, 563
BsmFI	GGGAC	1 cut(s)	1147
BsmI	GAATGC	2 cut(s)	105, 609
BsnI	GGCC	8 cut(s)	125, 254, 526, 696, 730, 903, 1000, 1071
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	60, 189, 745
Bsp143I	GATC	5 cut(s)	223, 498, 765, 1131, 1135
BspACI	CCGC	3 cut(s)	291, 323, 477
BspANI	GGCC	8 cut(s)	125, 254, 526, 696, 730, 903, 1000, 1071
BspCNI	CTCAG	1 cut(s)	475
BspDI	ATCGAT	1 cut(s)	1134
BspHI	TCATGA	2 cut(s)	426, 930
BspLI	GGNNCC	1 cut(s)	831
BspMAI	CTGCAG	1 cut(s)	713
BspPI	GGATC	3 cut(s)	231, 773, 1139
BspTI	CTTAAG	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	4 cut(s)	155, 459, 465, 1126
BsrFI	RCCGGY	1 cut(s)	1000
BsrI	ACTGG	6 cut(s)	393, 556, 577, 660, 775, 787
BssAI	RCCGGY	1 cut(s)	1000
BssECI	CCNNGG	1 cut(s)	1010
BssMI	GATC	5 cut(s)	223, 498, 765, 1131, 1135
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	6 cut(s)	545, 701, 763, 795, 824, 1011
Bst4CI	ACNGT	4 cut(s)	8, 24, 592, 675
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	746
BstC8I	GCNNGC	3 cut(s)	327, 741, 986
BstDEI	CTNAG	3 cut(s)	101, 483, 1053
BstF5I	GGATG	1 cut(s)	1054
BstH2I	RGCGCY	1 cut(s)	1106
BstHHI	GCGC	1 cut(s)	1105
BstKTI	GATC	5 cut(s)	226, 501, 768, 1134, 1138
BstMAI	GTCTC	4 cut(s)	144, 259, 563, 795
BstMBI	GATC	5 cut(s)	223, 498, 765, 1131, 1135
BstMWI	GCNNNNNNNGC	9 cut(s)	64, 131, 245, 338, 736, 990, 1006, 1012, 1015
BstNI	CCWGG	6 cut(s)	545, 701, 763, 795, 824, 1011
BstNSI	RCATGY	1 cut(s)	628
BstPAI	GACNNNNGTC	1 cut(s)	15
BstSCI	CCNGG	6 cut(s)	543, 699, 761, 793, 822, 1009
BstSFI	CTRYAG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	6 cut(s)	316, 695, 876, 993, 1027, 1092
BstV2I	GAAGAC	2 cut(s)	696, 746
BstXI	CCANNNNNNTGG	1 cut(s)	794
Bsu15I	ATCGAT	1 cut(s)	1134
BsuI	GTATCC	2 cut(s)	541, 959
BsuRI	GGCC	8 cut(s)	125, 254, 526, 696, 730, 903, 1000, 1071
BsuTUI	ATCGAT	1 cut(s)	1134
BtsCI	GGATG	1 cut(s)	1054
BtsIMutI	CAGTG	3 cut(s)	588, 653, 768
Cac8I	GCNNGC	3 cut(s)	327, 741, 986
CciI	TCATGA	2 cut(s)	426, 930
CfoI	GCGC	1 cut(s)	1105
Cfr10I	RCCGGY	1 cut(s)	1000
Cfr13I	GGNCC	2 cut(s)	525, 829
ClaI	ATCGAT	1 cut(s)	1134
Csp6I	GTAC	3 cut(s)	32, 574, 938
CviAII	CATG	7 cut(s)	121, 427, 625, 905, 931, 990, 1019
CviQI	GTAC	3 cut(s)	32, 574, 938
DdeI	CTNAG	3 cut(s)	101, 483, 1053
DpnI	GATC	5 cut(s)	225, 500, 767, 1133, 1137
DpnII	GATC	5 cut(s)	223, 498, 765, 1131, 1135
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	730
Eco24I	GRGCYC	2 cut(s)	189, 745
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	514
EcoRII	CCWGG	6 cut(s)	543, 699, 761, 793, 822, 1009
EcoT38I	GRGCYC	2 cut(s)	189, 745
Esp3I	CGTCTC	2 cut(s)	144, 563
FaeI	CATG	7 cut(s)	124, 430, 628, 908, 934, 993, 1022
FaqI	GGGAC	1 cut(s)	1147
FatI	CATG	7 cut(s)	120, 426, 624, 904, 930, 989, 1018
FauNDI	CATATG	1 cut(s)	911
Fnu4HI	GCNGC	6 cut(s)	330, 709, 865, 1007, 1016, 1106
FokI	GGATG	1 cut(s)	1061
FriOI	GRGCYC	2 cut(s)	189, 745
Fsp4HI	GCNGC	6 cut(s)	330, 709, 865, 1007, 1016, 1106
GlaI	GCGC	1 cut(s)	1104
GluI	GCNGC	6 cut(s)	330, 709, 865, 1007, 1016, 1106
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	1106
HaeIII	GGCC	8 cut(s)	125, 254, 526, 696, 730, 903, 1000, 1071
HapII	CCGG	2 cut(s)	815, 1001
HhaI	GCGC	1 cut(s)	1105
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	7 cut(s)	124, 430, 628, 908, 934, 993, 1022
Hin6I	GCGC	1 cut(s)	1103
HinP1I	GCGC	1 cut(s)	1103
HincII	GTYRAC	2 cut(s)	20, 355
HindII	GTYRAC	2 cut(s)	20, 355
HinfI	GANTC	3 cut(s)	214, 296, 880
HpaII	CCGG	2 cut(s)	815, 1001
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	3 cut(s)	20, 355, 829
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	6 cut(s)	262, 347, 427, 440, 632, 931
Hpy8I	GTNNAC	3 cut(s)	20, 355, 829
Hpy99I	CGWCG	3 cut(s)	223, 247, 494
HpyAV	CCTTC	7 cut(s)	136, 153, 427, 538, 715, 836, 893
HpyCH4III	ACNGT	4 cut(s)	8, 24, 592, 675
HpyCH4IV	ACGT	4 cut(s)	137, 489, 572, 894
HpyCH4V	TGCA	6 cut(s)	239, 332, 711, 955, 993, 1108
HpyF10VI	GCNNNNNNNGC	9 cut(s)	64, 131, 245, 338, 736, 990, 1006, 1012, 1015
HpyF3I	CTNAG	3 cut(s)	101, 483, 1053
HpySE526I	ACGT	4 cut(s)	137, 489, 572, 894
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	7 cut(s)	124, 430, 628, 908, 934, 993, 1022
HspAI	GCGC	1 cut(s)	1103
Kzo9I	GATC	5 cut(s)	223, 498, 765, 1131, 1135
LmnI	GCTCC	2 cut(s)	306, 479
Lsp1109I	GCAGC	6 cut(s)	316, 695, 876, 993, 1027, 1092
LweI	GCATC	4 cut(s)	248, 350, 625, 1039
MaeII	ACGT	4 cut(s)	137, 489, 572, 894
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	5 cut(s)	225, 500, 767, 1133, 1137
MboI	GATC	5 cut(s)	223, 498, 765, 1131, 1135
MboII	GAAGA	8 cut(s)	168, 198, 313, 386, 442, 701, 746, 1044
MhlI	GDGCHC	3 cut(s)	60, 189, 745
MluCI	AATT	6 cut(s)	111, 227, 446, 810, 846, 858
MmeI	TCCRAC	2 cut(s)	201, 381
MseI	TTAA	5 cut(s)	42, 561, 734, 747, 1175
MslI	CAYNNNNRTG	2 cut(s)	42, 1113
MspA1I	CMGCKG	1 cut(s)	477
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	2 cut(s)	815, 1001
MspR9I	CCNGG	6 cut(s)	545, 701, 763, 795, 824, 1011
Mva1269I	GAATGC	2 cut(s)	105, 609
MvaI	CCWGG	6 cut(s)	545, 701, 763, 795, 824, 1011
MwoI	GCNNNNNNNGC	9 cut(s)	64, 131, 245, 338, 736, 990, 1006, 1012, 1015
NdeI	CATATG	1 cut(s)	911
NdeII	GATC	5 cut(s)	223, 498, 765, 1131, 1135
NlaIII	CATG	7 cut(s)	124, 430, 628, 908, 934, 993, 1022
NlaIV	GGNNCC	1 cut(s)	831
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	628
PagI	TCATGA	2 cut(s)	426, 930
PceI	AGGCCT	1 cut(s)	730
PciI	ACATGT	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	2 cut(s)	239, 498
PctI	GAATGC	2 cut(s)	105, 609
PfeI	GAWTC	3 cut(s)	214, 296, 880
PkrI	GCNGC	6 cut(s)	331, 710, 866, 1008, 1017, 1107
PscI	ACATGT	1 cut(s)	624
PshAI	GACNNNNGTC	1 cut(s)	15
Psp6I	CCWGG	6 cut(s)	543, 699, 761, 793, 822, 1009
PspGI	CCWGG	6 cut(s)	543, 699, 761, 793, 822, 1009
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	2 cut(s)	525, 829
PstI	CTGCAG	1 cut(s)	713
RsaI	GTAC	3 cut(s)	33, 575, 939
RsaNI	GTAC	3 cut(s)	32, 574, 938
RseI	CAYNNNNRTG	2 cut(s)	42, 1113
SaqAI	TTAA	5 cut(s)	42, 561, 734, 747, 1175
SatI	GCNGC	6 cut(s)	330, 709, 865, 1007, 1016, 1106
Sau3AI	GATC	5 cut(s)	223, 498, 765, 1131, 1135
Sau96I	GGNCC	2 cut(s)	525, 829
ScrFI	CCNGG	6 cut(s)	545, 701, 763, 795, 824, 1011
SduI	GDGCHC	3 cut(s)	60, 189, 745
SfaNI	GCATC	4 cut(s)	248, 350, 625, 1039
SfcI	CTRYAG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	829
SmiMI	CAYNNNNRTG	2 cut(s)	42, 1113
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
Sse9I	AATT	6 cut(s)	111, 227, 446, 810, 846, 858
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	3 cut(s)	291, 323, 477
StuI	AGGCCT	1 cut(s)	730
StyD4I	CCNGG	6 cut(s)	543, 699, 761, 793, 822, 1009
TaaI	ACNGT	4 cut(s)	8, 24, 592, 675
TaiI	ACGT	4 cut(s)	140, 492, 575, 897
TaqI	TCGA	4 cut(s)	242, 299, 501, 1134
TasI	AATT	6 cut(s)	111, 227, 446, 810, 846, 858
TfiI	GAWTC	3 cut(s)	214, 296, 880
Tru1I	TTAA	5 cut(s)	42, 561, 734, 747, 1175
Tru9I	TTAA	5 cut(s)	42, 561, 734, 747, 1175
TscAI	CASTG	3 cut(s)	595, 660, 775
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	6 cut(s)	329, 708, 864, 1006, 1015, 1105
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	5 cut(s)	17, 443, 702, 947, 1035
TspGWI	ACGGA	2 cut(s)	207, 1095
TspRI	CASTG	3 cut(s)	595, 660, 775
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	829
XapI	RAATTY	3 cut(s)	111, 446, 810
XceI	RCATGY	1 cut(s)	628
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.