Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1537407 .. 1541450

Gene Structure 4044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGACAAGGCTCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCAGTGGAGCTGAGGATGTTGCTTTGATTGAGTATGCACATTTGACCGGTAGACCCTACAGGGTGTTCAGTTTGGATACTGGGAGGCTGAACCCAGAAACATATCAGTTCTTTGACACAGTTGAGAAGCACTATGGTATCCACATTGAATACATGTTTCCTGATTCTGTGGAAGTTCAGGCATTAGTAAGGAGCAAAGGGCTTTTCTCTTTCTATGAGGATGGACACCAGGAATGCTGCCGTGTGAGGAAGGTGAGGCCCCTCCGGAGAGCCCTGAAGGGTCTTCGTGCTTGGATCACTGGCCAAAGGAAAGATCAATCTCCAGGTACCAGGTCTGAAGTTCCTGTTGTCCAGGTTGACCCCGTTTTTGAGGGTTTGGATGGTGGAGCTGGCAGCCTGGTGAAGTGGAACCCAGTTGCTAATGTCGAGGGTGTTGATGTATGGAACTTCCTTCGTGCCATGAACGTGCCTGTGAATTCACTGCACTCCCAGGGATACATTTCAATTGGTTGTGAGCCATGCACAAGGTCAGTCCTACCGGGACAACATGAGAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAGGCAAAGGAGTGTGGTCTTCACAAAGGCAATCTCAAACAGGAAGATGGTCAAGCAAATGGCAATGGAAATGGAGCTGCCAATCCCAACGGAACAGCCACACCTGACATTTTCACTTCCCAGAATTTGGTCACCTTAAGCAGGCCTGGAATAGAGAATTTGGCAAGACTTGAGAACCGGCAAGAACCATGGATTGTAGTACTCTATGCGCCTTGGTGCCAATTCTGTCAGGCAATGGAAGCATCATACGATGAGTTGGCCAACAAGTTGGCAGGGAGTGGTGTGAAGGTAGGAAAGTTCAGAGCAGATGGTGAGCAAAAGGAGTATGCCCAGACAGAACTTCAACTCGGAAGCTTCCCTACAATACTTTTCTTCCCGAAACACTCTTCTCGGCCAATCAAGTACCCATCAGAGAAGAGGGATGTTGATTCGCTGATGGCTTTCATCAATGCCCTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

362

Amino Acids

40.54

Weight (kDa)

6.28

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPS_reduct	PF01507	12 - 191	1.3e-48	Phosphoadenosine phosphosulfate reductase domain
Thioredoxin	PF00085	266 - 359	4.8e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62180 AT1G62180 AT4G04610 AT4G21990 AT4G21990
fragaria_vesca	FvH4_3g01900
malus_domestica	MD03G1198900.v1.1 MD05G1348200.v1.1 MD10G1323000.v1.1 MD11G1215200.v1.1
prunus_persica	Prupe.4G019200_v2.0.a1 Prupe.4G216100_v2.0.a1
pyrus_communis	pycom03g15040 pycom05g31570 pycom10g27340
rosa_chinensis	RchiOBHm_Chr5g0002761
rosa_laevigata	RLG00000031056
rosa_multiflora	Rmu_sc0013603.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073140
rosa_rugosa	Rorug04G0399100
rosa_samantha	Rh5AG022200 Rh5BG025100 Rh5DG023500
rosa_wichuraiana	Rw5G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	371, 843
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	309
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	3 cut(s)	346, 885, 1019
AcsI	RAATTY	4 cut(s)	20, 520, 751, 784
AcuI	CTGAAG	3 cut(s)	31, 341, 402
AfaI	GTAC	3 cut(s)	373, 828, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	754, 768
AflII	CTTAAG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	198
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	194, 549, 971
AjnI	CCWGG	7 cut(s)	273, 367, 374, 396, 441, 534, 772
AluBI	AGCT	4 cut(s)	56, 434, 704, 981
AluI	AGCT	4 cut(s)	56, 434, 704, 981
AlwI	GGATC	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	309
AoxI	GGCC	5 cut(s)	302, 346, 770, 885, 1019
ApeKI	GCWGC	3 cut(s)	282, 438, 704
ApoI	RAATTY	4 cut(s)	20, 520, 751, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AsiGI	ACCGGT	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	310, 457, 751, 950
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BalI	TGGCCA	2 cut(s)	348, 887
BanI	GGYRCC	2 cut(s)	371, 843
BanII	GRGCYC	1 cut(s)	319
BarI	GAAGNNNNNNTAC	2 cut(s)	970, 1002
BbsI	GAAGAC	2 cut(s)	320, 638
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	269, 450, 691
BccI	CCATC	6 cut(s)	260, 419, 668, 929, 1042, 1057
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	7 cut(s)	275, 369, 376, 398, 443, 536, 774
BciVI	GTATCC	3 cut(s)	115, 194, 533
BcnI	CCSGG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	763
BfuI	GTATCC	3 cut(s)	115, 194, 533
BisI	GCNGC	3 cut(s)	283, 439, 705
BlsI	GCNGC	3 cut(s)	284, 440, 706
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	8 cut(s)	275, 369, 376, 398, 443, 536, 585, 774
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	4 cut(s)	305, 373, 455, 845
BmrFI	CCNGG	8 cut(s)	275, 369, 376, 398, 443, 536, 585, 774
BmrI	ACTGGG	2 cut(s)	135, 452
BmsI	GCATC	2 cut(s)	613, 878
BmuI	ACTGGG	2 cut(s)	135, 452
BpiI	GAAGAC	2 cut(s)	320, 638
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	35, 818
BpuMI	CCSGG	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	534, 535, 627, 815, 839
BsaWI	WCCGGW	2 cut(s)	92, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	754, 768
Bse118I	RCCGGY	2 cut(s)	92, 804
Bse1I	ACTGG	3 cut(s)	130, 349, 458
Bse3DI	GCAATG	3 cut(s)	33, 697, 867
BseAI	TCCGGA	1 cut(s)	309
BseBI	CCWGG	7 cut(s)	275, 369, 376, 398, 443, 536, 774
BseDI	CCNNGG	5 cut(s)	534, 535, 627, 815, 839
BseGI	GGATG	5 cut(s)	67, 271, 430, 628, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	754, 768
BseMI	GCAATG	3 cut(s)	33, 697, 867
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	3 cut(s)	130, 349, 458
BseXI	GCAGC	3 cut(s)	269, 450, 691
BsgI	GTGCAG	1 cut(s)	512
BshFI	GGCC	5 cut(s)	304, 348, 772, 887, 1021
BshNI	GGYRCC	2 cut(s)	371, 843
BshTI	ACCGGT	1 cut(s)	92
BsiSI	CCGG	4 cut(s)	93, 310, 584, 805
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	754, 768
BsmFI	GGGAC	1 cut(s)	600
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	5 cut(s)	304, 348, 772, 887, 1021
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	339, 358
Bsp19I	CCATGG	1 cut(s)	815
BspANI	GGCC	5 cut(s)	304, 348, 772, 887, 1021
BspCNI	CTCAG	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	309
BspLI	GGNNCC	4 cut(s)	305, 373, 455, 845
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	2 cut(s)	371, 843
BspTI	CTTAAG	1 cut(s)	763
BsrDI	GCAATG	3 cut(s)	33, 697, 867
BsrFI	RCCGGY	2 cut(s)	92, 804
BsrI	ACTGG	3 cut(s)	130, 349, 458
BssAI	RCCGGY	2 cut(s)	92, 804
BssECI	CCNNGG	5 cut(s)	534, 535, 627, 815, 839
BssMI	GATC	2 cut(s)	339, 358
BssT1I	CCWWGG	3 cut(s)	627, 815, 839
Bst2UI	CCWGG	7 cut(s)	275, 369, 376, 398, 443, 536, 774
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	1018, 1037
BstAFI	CTTAAG	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	436, 770
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	815
BstEII	GGTNACC	1 cut(s)	757
BstENI	CCTNNNNNAGG	1 cut(s)	766
BstF5I	GGATG	5 cut(s)	67, 271, 430, 628, 1054
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	2 cut(s)	342, 361
BstMBI	GATC	2 cut(s)	339, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	7 cut(s)	275, 369, 376, 398, 443, 536, 774
BstNSI	RCATGY	1 cut(s)	202
BstPI	GGTNACC	1 cut(s)	757
BstSCI	CCNGG	8 cut(s)	273, 367, 374, 396, 441, 534, 583, 772
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	269, 450, 691
BstV2I	GAAGAC	2 cut(s)	320, 638
BstXI	CCANNNNNNTGG	1 cut(s)	895
BsuI	GTATCC	3 cut(s)	115, 194, 533
BsuRI	GGCC	5 cut(s)	304, 348, 772, 887, 1021
BtgI	CCRYGG	1 cut(s)	815
BtsCI	GGATG	5 cut(s)	67, 271, 430, 628, 1054
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	3 cut(s)	55, 342, 524
Cac8I	GCNNGC	2 cut(s)	436, 770
CfoI	GCGC	1 cut(s)	838
Cfr10I	RCCGGY	2 cut(s)	92, 804
Cfr13I	GGNCC	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	372, 827, 1030
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	5 cut(s)	199, 505, 564, 593, 816
CviQI	GTAC	3 cut(s)	372, 827, 1030
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	341, 360
DpnII	GATC	2 cut(s)	339, 358
EaeI	YGGCCR	3 cut(s)	346, 885, 1019
Eam1104I	CTCTTC	2 cut(s)	1018, 1037
EarI	CTCTTC	2 cut(s)	1018, 1037
Eco130I	CCWWGG	3 cut(s)	627, 815, 839
Eco147I	AGGCCT	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	319
Eco57I	CTGAAG	3 cut(s)	31, 341, 402
Eco91I	GGTNACC	1 cut(s)	757
EcoNI	CCTNNNNNAGG	1 cut(s)	766
EcoO109I	RGGNCCY	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	7 cut(s)	273, 367, 374, 396, 441, 534, 772
EcoT14I	CCWWGG	3 cut(s)	627, 815, 839
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	3 cut(s)	627, 815, 839
FaeI	CATG	5 cut(s)	202, 508, 567, 596, 819
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	5 cut(s)	198, 504, 563, 592, 815
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	283, 439, 705
FokI	GGATG	5 cut(s)	74, 278, 437, 635, 1061
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	3 cut(s)	283, 439, 705
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	3 cut(s)	283, 439, 705
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	5 cut(s)	304, 348, 772, 887, 1021
HapII	CCGG	4 cut(s)	93, 310, 584, 805
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	5 cut(s)	202, 508, 567, 596, 819
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	979
HinfI	GANTC	2 cut(s)	209, 1055
HpaII	CCGG	4 cut(s)	93, 310, 584, 805
HphI	GGTGA	4 cut(s)	310, 457, 751, 950
Hpy166II	GTNNAC	2 cut(s)	98, 403
Hpy188I	TCNGA	4 cut(s)	382, 929, 977, 1039
Hpy188III	TCNNGA	4 cut(s)	14, 206, 310, 1003
Hpy8I	GTNNAC	2 cut(s)	98, 403
HpyAV	CCTTC	7 cut(s)	55, 289, 316, 506, 596, 600, 907
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	83, 529, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	202, 508, 567, 596, 819
HspAI	GCGC	1 cut(s)	836
Kpn2I	TCCGGA	1 cut(s)	309
KpnI	GGTACC	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	339, 358
LmnI	GCTCC	4 cut(s)	53, 237, 431, 701
Lsp1109I	GCAGC	3 cut(s)	269, 450, 691
LweI	GCATC	2 cut(s)	613, 878
MabI	ACCWGGT	1 cut(s)	374
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	2 cut(s)	341, 360
MboI	GATC	2 cut(s)	339, 358
MboII	GAAGA	6 cut(s)	320, 638, 683, 991, 1005, 1054
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	2 cut(s)	348, 887
MluCI	AATT	6 cut(s)	20, 520, 549, 751, 784, 848
MluNI	TGGCCA	2 cut(s)	348, 887
Mox20I	TGGCCA	2 cut(s)	348, 887
MroI	TCCGGA	1 cut(s)	309
MscI	TGGCCA	2 cut(s)	348, 887
MseI	TTAA	1 cut(s)	764
MslI	CAYNNNNRTG	1 cut(s)	509
Msp20I	TGGCCA	2 cut(s)	348, 887
MspCI	CTTAAG	1 cut(s)	763
MspI	CCGG	4 cut(s)	93, 310, 584, 805
MspR9I	CCNGG	8 cut(s)	275, 369, 376, 398, 443, 536, 585, 774
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	7 cut(s)	275, 369, 376, 398, 443, 536, 774
MwoI	GCNNNNNNNGC	1 cut(s)	866
NciI	CCSGG	1 cut(s)	585
NcoI	CCATGG	1 cut(s)	815
NdeII	GATC	2 cut(s)	339, 358
NlaIII	CATG	5 cut(s)	202, 508, 567, 596, 819
NlaIV	GGNNCC	4 cut(s)	305, 373, 455, 845
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	1 cut(s)	757
NspI	RCATGY	1 cut(s)	202
PasI	CCCWGGG	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	772
PciI	ACATGT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	209, 1055
PflMI	CCANNNNNTGG	1 cut(s)	754
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	284, 440, 706
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	7 cut(s)	273, 367, 374, 396, 441, 534, 772
PspEI	GGTNACC	1 cut(s)	757
PspGI	CCWGG	7 cut(s)	273, 367, 374, 396, 441, 534, 772
PspN4I	GGNNCC	4 cut(s)	305, 373, 455, 845
PspPI	GGNCC	1 cut(s)	303
RsaI	GTAC	3 cut(s)	373, 828, 1031
RsaNI	GTAC	3 cut(s)	372, 827, 1030
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	764
SatI	GCNGC	3 cut(s)	283, 439, 705
Sau3AI	GATC	2 cut(s)	339, 358
Sau96I	GGNCC	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	828
ScrFI	CCNGG	8 cut(s)	275, 369, 376, 398, 443, 536, 585, 774
SduI	GDGCHC	1 cut(s)	319
SexAI	ACCWGGT	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	613, 878
SfcI	CTRYAG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	3 cut(s)	14, 763, 797
SmoI	CTYRAG	3 cut(s)	14, 763, 797
Sse9I	AATT	6 cut(s)	20, 520, 549, 751, 784, 848
SseBI	AGGCCT	1 cut(s)	772
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	8 cut(s)	273, 367, 374, 396, 441, 534, 583, 772
StyI	CCWWGG	3 cut(s)	627, 815, 839
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	471
TasI	AATT	6 cut(s)	20, 520, 549, 751, 784, 848
TatI	WGTACW	1 cut(s)	826
TfiI	GAWTC	2 cut(s)	209, 1055
Tru1I	TTAA	1 cut(s)	764
Tru9I	TTAA	1 cut(s)	764
TscAI	CASTG	3 cut(s)	55, 349, 531
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	3 cut(s)	282, 438, 704
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	521, 1060
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	3 cut(s)	55, 349, 531
Van91I	CCANNNNNTGG	1 cut(s)	754
Vha464I	CTTAAG	1 cut(s)	763
XagI	CCTNNNNNAGG	1 cut(s)	766
XapI	RAATTY	4 cut(s)	20, 520, 751, 784
XceI	RCATGY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.