Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007763

Physical Location & Seq

Genomic Coordinates Reverse (-)

11657008 .. 11659167

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCACTAGCAATCAACGTTTCTTCATCTTCTTCTTCTGCGATCTCAAGCTCTAGCTTCCCTTCTTCAGATCTCAAAGTAACAAAAATCGGATCATTGAGGTTATTGAATCGTACCAATGTCTCTGCGGCTTCTCTGAGTTTGTCCGGGAAGAGATCCTCCGTGAAAGCTCTTAATGTGCAATCAATTACAAAGGAATCCATTGTTGCTTCTGAGGTTACAGAGAAGCTAGATGTGGTGGAAGTTGAAGACTTTGAGGAACTAGCAAAGAGATTAGAGAATGCTTCTCCTCTTGAGATCATGGATAAAGCTCTTGAGAAGTTTGGGAATGACATTGCTATTGCCTTTAGTGGAGCTGAAGATGTTGCTCTGATTGAGTATGCTCATTTAACTGGAAGACCTTATAGGGTATTCAGTTTGGATACAGGGAGATTGAATCCAGAAACATATAGACTCTTCGATACCGTGGAGAAACATTACGGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGGTTCAAGCTTTAGTTAGGAACAAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGTGTTGCCGTATTAGAAAGGTGAGACCTTTGAGGCGTGCGTTGAAGGGTTTACGTGCTTGGATCACTGGTCAGAGGAAAGATCAATCACCCGGGACAAGATCGGAGATTCCTGTTGTTCAGGTTGATCCAGTGTTTGAAGGATTAGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCTAATGTTGAAGGGAATGATGTTTGGAATTTCTTGAGGACGATGGATGTTCCTGTCAACACGCTTCACGCTGCGGGTTATGTTTCAATCGGATGTGAGCCATGCACGAGAGCGGTTTTGCCGGGTCAGCATGAGAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGTGTGGCCTTCACAAAGGGAATATCAAGGAGAATACCAATGGAAACGCAACCGCTAATGTCAACGGGACAGCCTCAGTCGCGGATATCTTCAATAGCGAGAATGTTGTGAACTTGAGCAGGCAAGGGATTGAGAATTTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGTTGTGCTTTATGCACCGTGGTGCCCGTTTTGTCAGGCAATGGAAGCTTCATTCGATGAATTGGCGGATAAGCTGGGAGGAAGTGGTGTGAAGGTTGCTAAGTTTAGAGCTGATGGTGACCAGAAGGACTTTGCCAAAAAGGAGTTGCAGCTTGGAAGCTTTCCAACAATACTTGTGTTCCCAAAGAACTCTTCAAGACCAATCAAGTATCCATCAGAGAAGAGAGATGTTGATTCTTTGACATCTTTCTTGAATCTTGTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

458

Amino Acids

50.69

Weight (kDa)

6.64

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPS_reduct	PF01507	112 - 292	2.9e-48	Phosphoadenosine phosphosulfate reductase domain
Thioredoxin	PF00085	362 - 454	3.1e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62180 AT1G62180 AT4G04610 AT4G21990 AT4G21990
fragaria_vesca	FvH4_3g01900
malus_domestica	MD03G1198900.v1.1 MD05G1348200.v1.1 MD10G1323000.v1.1 MD11G1215200.v1.1
prunus_persica	Prupe.4G019200_v2.0.a1 Prupe.4G216100_v2.0.a1
pyrus_communis	pycom03g15040 pycom05g31570 pycom10g27340
rosa_chinensis	RchiOBHm_Chr5g0002761
rosa_laevigata	RLG00000031056
rosa_multiflora	Rmu_sc0013603.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073140
rosa_rugosa	Rorug04G0399100
rosa_samantha	Rh5AG022200 Rh5BG025100 Rh5DG023500
rosa_wichuraiana	Rw5G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1131
AccBSI	CCGCTC	1 cut(s)	875
AccII	CGCG	1 cut(s)	1019
AciI	CCGC	6 cut(s)	128, 836, 875, 990, 1019, 1175
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	5 cut(s)	100, 150, 647, 698, 1115
AcsI	RAATTY	2 cut(s)	790, 1072
AcuI	CTGAAG	2 cut(s)	51, 378
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	1099
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	1285, 1317
AleI	CACNNNNGTG	1 cut(s)	1129
Alw26I	GTCTC	2 cut(s)	127, 595
AlwI	GGATC	5 cut(s)	100, 150, 647, 698, 1115
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	943
ApeKI	GCWGC	2 cut(s)	833, 1258
ApoI	RAATTY	2 cut(s)	790, 1072
AsuC2I	CCSGG	4 cut(s)	148, 669, 670, 885
AsuHPI	GGTGA	5 cut(s)	563, 610, 657, 757, 1238
AvaI	CYCGRG	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	1136
BanI	GGYRCC	1 cut(s)	1131
BauI	CACGAG	1 cut(s)	868
BbsI	GAAGAC	2 cut(s)	255, 403
BbvI	GCAGC	2 cut(s)	820, 1270
BccI	CCATC	6 cut(s)	560, 719, 799, 903, 1217, 1330
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	2 cut(s)	415, 1329
BcnI	CCSGG	4 cut(s)	148, 669, 670, 885
BcoDI	GTCTC	2 cut(s)	127, 595
BfaI	CTAG	4 cut(s)	8, 54, 230, 263
BfuI	GTATCC	2 cut(s)	415, 1329
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	3 cut(s)	129, 834, 1259
BlsI	GCNGC	3 cut(s)	130, 835, 1260
Bme1390I	CCNGG	5 cut(s)	148, 575, 669, 670, 885
BmeT110I	CYCGRG	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	1133
BmrFI	CCNGG	5 cut(s)	148, 575, 669, 670, 885
BmsI	GCATC	2 cut(s)	499, 913
BpiI	GAAGAC	2 cut(s)	255, 403
Bpu10I	CCTNAGC	1 cut(s)	927
BpuEI	CTTGAG	5 cut(s)	31, 314, 335, 817, 1072
BpuMI	CCSGG	4 cut(s)	148, 669, 670, 885
BsaAI	YACGTR	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	3 cut(s)	465, 668, 1127
BsaWI	WCCGGW	2 cut(s)	757, 1092
Bsc4I	CCNNNNNNNGG	1 cut(s)	1099
Bse1I	ACTGG	3 cut(s)	397, 649, 707
Bse3DI	GCAATG	2 cut(s)	333, 1155
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	465, 668, 1127
BseGI	GGATG	2 cut(s)	814, 860
BseLI	CCNNNNNNNGG	1 cut(s)	1099
BseMI	GCAATG	2 cut(s)	333, 1155
BseMII	CTCAG	3 cut(s)	128, 204, 1026
BseNI	ACTGG	3 cut(s)	397, 649, 707
BseRI	GAGGAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	1136
BseXI	GCAGC	2 cut(s)	820, 1270
BseYI	CCCAGC	1 cut(s)	1183
Bsh1236I	CGCG	1 cut(s)	1019
BshFI	GGCC	1 cut(s)	945
BshNI	GGYRCC	1 cut(s)	1131
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	5 cut(s)	147, 669, 758, 884, 1093
BslFI	GGGAC	2 cut(s)	685, 1018
BslI	CCNNNNNNNGG	1 cut(s)	1099
BsmAI	GTCTC	2 cut(s)	127, 595
BsmFI	GGGAC	2 cut(s)	685, 1018
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	945
Bso31I	GGTCTC	1 cut(s)	595
BsoBI	CYCGRG	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	1136
BspACI	CCGC	6 cut(s)	128, 836, 875, 990, 1019, 1175
BspANI	GGCC	1 cut(s)	945
BspCNI	CTCAG	3 cut(s)	129, 205, 1025
BspFNI	CGCG	1 cut(s)	1019
BspLI	GGNNCC	1 cut(s)	1133
BspPI	GGATC	5 cut(s)	100, 150, 647, 698, 1115
BspT107I	GGYRCC	1 cut(s)	1131
BspTNI	GGTCTC	1 cut(s)	595
BsrBI	CCGCTC	1 cut(s)	875
BsrDI	GCAATG	2 cut(s)	333, 1155
BsrI	ACTGG	3 cut(s)	397, 649, 707
BssECI	CCNNGG	3 cut(s)	465, 668, 1127
BssSI	CACGAG	1 cut(s)	868
Bst2BI	CACGAG	1 cut(s)	868
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	466, 482, 1128
Bst6I	CTCTTC	4 cut(s)	146, 461, 1306, 1325
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	615, 1058
BstDEI	CTNAG	5 cut(s)	137, 213, 927, 1012, 1209
BstDSI	CCRYGG	2 cut(s)	465, 1127
BstEII	GGTNACC	2 cut(s)	569, 1226
BstF5I	GGATG	2 cut(s)	814, 860
BstFNI	CGCG	1 cut(s)	1019
BstMAI	GTCTC	2 cut(s)	127, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	889, 1016, 1154
BstNI	CCWGG	1 cut(s)	575
BstPI	GGTNACC	2 cut(s)	569, 1226
BstSCI	CCNGG	5 cut(s)	146, 573, 667, 668, 883
BstSLI	GKGCMC	1 cut(s)	1136
BstUI	CGCG	1 cut(s)	1019
BstV1I	GCAGC	2 cut(s)	820, 1270
BstV2I	GAAGAC	2 cut(s)	255, 403
BstX2I	RGATCY	2 cut(s)	70, 155
BstYI	RGATCY	2 cut(s)	70, 155
BsuI	GTATCC	2 cut(s)	415, 1329
BsuRI	GGCC	1 cut(s)	945
BtgI	CCRYGG	2 cut(s)	465, 1127
BtsCI	GGATG	2 cut(s)	814, 860
BtsIMutI	CAGTG	2 cut(s)	642, 714
Cac8I	GCNNGC	2 cut(s)	615, 1058
Cfr9I	CCCGGG	1 cut(s)	668
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	301, 864, 893
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	5 cut(s)	137, 213, 927, 1012, 1209
Eam1104I	CTCTTC	4 cut(s)	146, 461, 1306, 1325
EarI	CTCTTC	4 cut(s)	146, 461, 1306, 1325
EciI	GGCGGA	1 cut(s)	1190
Eco31I	GGTCTC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	1024
Eco57I	CTGAAG	2 cut(s)	51, 378
Eco88I	CYCGRG	1 cut(s)	668
Eco91I	GGTNACC	2 cut(s)	569, 1226
EcoO65I	GGTNACC	2 cut(s)	569, 1226
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	1024
FaeI	CATG	3 cut(s)	304, 867, 896
FaqI	GGGAC	2 cut(s)	685, 1018
FatI	CATG	3 cut(s)	300, 863, 892
FauI	CCCGC	1 cut(s)	829
Fnu4HI	GCNGC	3 cut(s)	129, 834, 1259
FokI	GGATG	2 cut(s)	821, 867
Fsp4HI	GCNGC	3 cut(s)	129, 834, 1259
FspBI	CTAG	4 cut(s)	8, 54, 230, 263
GluI	GCNGC	3 cut(s)	129, 834, 1259
GsaI	CCCAGC	1 cut(s)	1187
HaeIII	GGCC	1 cut(s)	945
HapII	CCGG	5 cut(s)	147, 669, 758, 884, 1093
Hin1II	CATG	3 cut(s)	304, 867, 896
HincII	GTYRAC	2 cut(s)	820, 1000
HindII	GTYRAC	2 cut(s)	820, 1000
HindIII	AAGCTT	3 cut(s)	525, 1155, 1267
HinfI	GANTC	8 cut(s)	109, 197, 436, 453, 685, 754, 1343, 1363
HpaII	CCGG	5 cut(s)	147, 669, 758, 884, 1093
HphI	GGTGA	5 cut(s)	563, 610, 657, 757, 1238
Hpy166II	GTNNAC	4 cut(s)	629, 820, 1000, 1048
Hpy188III	TCNNGA	7 cut(s)	293, 314, 440, 506, 796, 1305, 1360
Hpy8I	GTNNAC	4 cut(s)	629, 820, 1000, 1048
HpyAV	CCTTC	8 cut(s)	72, 616, 710, 767, 896, 956, 1195, 1228
HpyCH4III	ACNGT	3 cut(s)	466, 482, 1128
HpyCH4IV	ACGT	2 cut(s)	18, 631
HpyCH4V	TGCA	4 cut(s)	181, 867, 1124, 1258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	889, 1016, 1154
HpyF3I	CTNAG	5 cut(s)	137, 213, 927, 1012, 1209
HpySE526I	ACGT	2 cut(s)	18, 631
Hsp92II	CATG	3 cut(s)	304, 867, 896
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	2 cut(s)	820, 1270
LweI	GCATC	2 cut(s)	499, 913
MaeI	CTAG	4 cut(s)	8, 54, 230, 263
MaeII	ACGT	2 cut(s)	18, 631
MaeIII	GTNAC	4 cut(s)	79, 217, 569, 1226
MbiI	CCGCTC	1 cut(s)	875
MflI	RGATCY	2 cut(s)	70, 155
MhlI	GDGCHC	1 cut(s)	1136
MluCI	AATT	4 cut(s)	186, 790, 1072, 1169
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	1298
MseI	TTAA	2 cut(s)	174, 389
MslI	CAYNNNNRTG	1 cut(s)	1129
MspI	CCGG	5 cut(s)	147, 669, 758, 884, 1093
MspR9I	CCNGG	5 cut(s)	148, 575, 669, 670, 885
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	3 cut(s)	889, 1016, 1154
NciI	CCSGG	4 cut(s)	148, 669, 670, 885
NlaIII	CATG	3 cut(s)	304, 867, 896
NlaIV	GGNNCC	1 cut(s)	1133
NmuCI	GTSAC	2 cut(s)	569, 1226
OliI	CACNNNNGTG	1 cut(s)	1129
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	7 cut(s)	109, 197, 436, 685, 754, 1343, 1363
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	130, 835, 1260
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Ppu21I	YACGTR	1 cut(s)	632
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	573
PspEI	GGTNACC	2 cut(s)	569, 1226
PspFI	CCCAGC	1 cut(s)	1183
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	1133
PsuI	RGATCY	2 cut(s)	70, 155
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	1129
SaqAI	TTAA	2 cut(s)	174, 389
SatI	GCNGC	3 cut(s)	129, 834, 1259
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	5 cut(s)	148, 575, 669, 670, 885
SduI	GDGCHC	1 cut(s)	1136
SfaNI	GCATC	2 cut(s)	499, 913
SmaI	CCCGGG	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	1129
SmlI	CTYRAG	5 cut(s)	46, 293, 314, 796, 1051
SmoI	CTYRAG	5 cut(s)	46, 293, 314, 796, 1051
Sse9I	AATT	4 cut(s)	186, 790, 1072, 1169
SsiI	CCGC	6 cut(s)	128, 836, 875, 990, 1019, 1175
SspMI	CTAG	4 cut(s)	8, 54, 230, 263
StyD4I	CCNGG	5 cut(s)	146, 573, 667, 668, 883
TaaI	ACNGT	3 cut(s)	466, 482, 1128
TaiI	ACGT	2 cut(s)	21, 634
TaqI	TCGA	2 cut(s)	459, 1164
TasI	AATT	4 cut(s)	186, 790, 1072, 1169
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	7 cut(s)	109, 197, 436, 685, 754, 1343, 1363
Tru1I	TTAA	2 cut(s)	174, 389
Tru9I	TTAA	2 cut(s)	174, 389
TscAI	CASTG	2 cut(s)	649, 714
TseFI	GTSAC	2 cut(s)	569, 1226
TseI	GCWGC	2 cut(s)	833, 1258
Tsp45I	GTSAC	2 cut(s)	569, 1226
TspDTI	ATGAA	5 cut(s)	15, 576, 1094, 1149, 1182
TspGWI	ACGGA	1 cut(s)	151
TspMI	CCCGGG	1 cut(s)	668
TspRI	CASTG	2 cut(s)	649, 714
XapI	RAATTY	2 cut(s)	790, 1072
XmaI	CCCGGG	1 cut(s)	668
XspI	CTAG	4 cut(s)	8, 54, 230, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.