Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1773097 .. 1776473

Gene Structure 3377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTTCCTGATTCTGTTGAAGTTCAGGCATTAGTAAGGAGCAAAGGGCTTTTCTCTTTCTATGAGGATGGACACCAGGAATGCTGCCGTGTGAGGAAGGTGAGACCCCTCCGGAGAGCCCTCAAGGGTCTTCGTGCTTGGATCACTGGCCAAAGGAAAGATCAATCTCCAGGTACCAGGTCTGAAGTTCCTGTTGTCCAGGTTGACCCCGTTTTTGAGGGTTTGGATGGTGGAGCTGGCAGCCTGGTGAAGTGGAACCCAGTTGCTAATGTCGAGGGTGTTGATGTATGGAACTTCCTTCGTGCCATGAACGTGCCTGTGAATTCACTGCACTCCCAGGGATACATTTCAATTGGCTGTGAGCCATGCACAAGGTCAGTCCTACCGGGACAACATGAGAGAGAAGGAAGGTGGTGGTGGGAGGATGCCAAGGCAAAGGAGTGTGGTCTTCACAAAGGCAATCTCAAACAGGAAGAGGGTCAAGCAAATGGCAATGGAAATGGAGCTGCCAATCCCAACGGAACAGCCACAGCTGACATTTTCACTTCCCAGAATTTGGTCACCTTAGGCAGGCCTGGAATAGAGAATTTGGCAAGACTTGAGAACCGGCAAGAACCTTGGATTGTAGTACTCTATGCGCCTTGGTGCCAATTCTGTCAGGCAATGGAAGCATCATACGATGAGTTGGCCAACAAGTTGGCAGGGAGTGGTGTGAAGGTAGGAAAGTTCAGAGCAGATGGTGAGCAAAAGGAGTATGCCCAGAAAGAACTTCAACTCGGAAGCTTCCCTACAATACTTTTCTTCCCGAAACACTCTTCTCGGCCAATCAAGTACCCATCAGAGAAGAGGGATGTTGATTCGCTGATGGCTTTCATCAATGCCCTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

296

Amino Acids

32.96

Weight (kDa)

8.42

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPS_reduct	PF01507	4 - 125	5.8e-33	Phosphoadenosine phosphosulfate reductase domain
Thioredoxin	PF00085	200 - 293	2.6e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62180 AT1G62180 AT4G04610 AT4G21990 AT4G21990
fragaria_vesca	FvH4_3g01900
malus_domestica	MD03G1198900.v1.1 MD05G1348200.v1.1 MD10G1323000.v1.1 MD11G1215200.v1.1
prunus_persica	Prupe.4G019200_v2.0.a1 Prupe.4G216100_v2.0.a1
pyrus_communis	pycom03g15040 pycom05g31570 pycom10g27340
rosa_chinensis	RchiOBHm_Chr5g0002761
rosa_laevigata	RLG00000031056
rosa_multiflora	Rmu_sc0013603.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073140
rosa_rugosa	Rorug04G0399100
rosa_samantha	Rh5AG022200 Rh5BG025100 Rh5DG023500
rosa_wichuraiana	Rw5G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	2 cut(s)	173, 645
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccIII	TCCGGA	1 cut(s)	111
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	3 cut(s)	148, 687, 821
AcsI	RAATTY	3 cut(s)	322, 553, 586
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	175, 630, 833
AfiI	CCNNNNNNNGG	2 cut(s)	556, 570
AgsI	TTSAA	3 cut(s)	20, 351, 773
AjnI	CCWGG	7 cut(s)	75, 169, 176, 198, 243, 336, 574
AluBI	AGCT	4 cut(s)	236, 506, 533, 783
AluI	AGCT	4 cut(s)	236, 506, 533, 783
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	4 cut(s)	148, 572, 687, 821
ApeKI	GCWGC	3 cut(s)	84, 240, 506
ApoI	RAATTY	3 cut(s)	322, 553, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	4 cut(s)	112, 259, 553, 752
AxyI	CCTNAGG	1 cut(s)	565
BalI	TGGCCA	2 cut(s)	150, 689
BanI	GGYRCC	2 cut(s)	173, 645
BanII	GRGCYC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	772, 804
BbsI	GAAGAC	2 cut(s)	122, 440
BbvI	GCAGC	3 cut(s)	71, 252, 493
BccI	CCATC	5 cut(s)	62, 221, 731, 844, 859
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	7 cut(s)	77, 171, 178, 200, 245, 338, 576
BciVI	GTATCC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	335
BisI	GCNGC	3 cut(s)	85, 241, 507
BlsI	GCNGC	3 cut(s)	86, 242, 508
BmcAI	AGTACT	1 cut(s)	630
Bme1390I	CCNGG	8 cut(s)	77, 171, 178, 200, 245, 338, 387, 576
BmiI	GGNNCC	3 cut(s)	175, 257, 647
BmrFI	CCNGG	8 cut(s)	77, 171, 178, 200, 245, 338, 387, 576
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	415, 680
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	122, 440
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	107, 620
BpuMI	CCSGG	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	5 cut(s)	336, 337, 429, 617, 641
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 570
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	2 cut(s)	151, 260
Bse21I	CCTNAGG	1 cut(s)	565
Bse3DI	GCAATG	2 cut(s)	499, 669
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	7 cut(s)	77, 171, 178, 200, 245, 338, 576
BseDI	CCNNGG	5 cut(s)	336, 337, 429, 617, 641
BseGI	GGATG	4 cut(s)	73, 232, 430, 856
BseLI	CCNNNNNNNGG	2 cut(s)	556, 570
BseMI	GCAATG	2 cut(s)	499, 669
BseNI	ACTGG	2 cut(s)	151, 260
BseXI	GCAGC	3 cut(s)	71, 252, 493
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	4 cut(s)	150, 574, 689, 823
BshNI	GGYRCC	2 cut(s)	173, 645
BsiSI	CCGG	3 cut(s)	112, 386, 607
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	556, 570
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	4 cut(s)	150, 574, 689, 823
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	141, 160
BspANI	GGCC	4 cut(s)	150, 574, 689, 823
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	175, 257, 647
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	2 cut(s)	173, 645
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	499, 669
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	151, 260
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	5 cut(s)	336, 337, 429, 617, 641
BssMI	GATC	2 cut(s)	141, 160
BssT1I	CCWWGG	3 cut(s)	429, 617, 641
Bst2UI	CCWGG	7 cut(s)	77, 171, 178, 200, 245, 338, 576
Bst6I	CTCTTC	3 cut(s)	468, 820, 839
BstC8I	GCNNGC	2 cut(s)	238, 572
BstDEI	CTNAG	1 cut(s)	565
BstEII	GGTNACC	1 cut(s)	559
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstF5I	GGATG	4 cut(s)	73, 232, 430, 856
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	2 cut(s)	144, 163
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	2 cut(s)	141, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	7 cut(s)	77, 171, 178, 200, 245, 338, 576
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	8 cut(s)	75, 169, 176, 198, 243, 336, 385, 574
BstV1I	GCAGC	3 cut(s)	71, 252, 493
BstV2I	GAAGAC	2 cut(s)	122, 440
BstXI	CCANNNNNNTGG	1 cut(s)	697
Bsu36I	CCTNAGG	1 cut(s)	565
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	4 cut(s)	150, 574, 689, 823
BtsCI	GGATG	4 cut(s)	73, 232, 430, 856
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	144, 326
Cac8I	GCNNGC	2 cut(s)	238, 572
CfoI	GCGC	1 cut(s)	640
Cfr10I	RCCGGY	1 cut(s)	606
CsiI	ACCWGGT	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	174, 629, 832
CviAII	CATG	3 cut(s)	307, 366, 395
CviQI	GTAC	3 cut(s)	174, 629, 832
DdeI	CTNAG	1 cut(s)	565
DpnI	GATC	2 cut(s)	143, 162
DpnII	GATC	2 cut(s)	141, 160
EaeI	YGGCCR	3 cut(s)	148, 687, 821
Eam1104I	CTCTTC	3 cut(s)	468, 820, 839
EarI	CTCTTC	3 cut(s)	468, 820, 839
Eco130I	CCWWGG	3 cut(s)	429, 617, 641
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	565
Eco91I	GGTNACC	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoO65I	GGTNACC	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	7 cut(s)	75, 169, 176, 198, 243, 336, 574
EcoT14I	CCWWGG	3 cut(s)	429, 617, 641
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	429, 617, 641
FaeI	CATG	3 cut(s)	310, 369, 398
FaiI	YATR	8 cut(s)	63, 289, 308, 367, 396, 636, 676, 756
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	3 cut(s)	306, 365, 394
Fnu4HI	GCNGC	3 cut(s)	85, 241, 507
FokI	GGATG	4 cut(s)	80, 239, 437, 863
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	85, 241, 507
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	3 cut(s)	85, 241, 507
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	150, 574, 689, 823
HapII	CCGG	3 cut(s)	112, 386, 607
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	3 cut(s)	310, 369, 398
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	2 cut(s)	11, 857
HpaII	CCGG	3 cut(s)	112, 386, 607
HphI	GGTGA	4 cut(s)	112, 259, 553, 752
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	184, 731, 779, 841
Hpy188III	TCNNGA	3 cut(s)	8, 112, 805
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	5 cut(s)	91, 308, 398, 402, 709
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	331, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	1 cut(s)	565
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	310, 369, 398
HspAI	GCGC	1 cut(s)	638
Kpn2I	TCCGGA	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	141, 160
LmnI	GCTCC	3 cut(s)	39, 233, 503
Lsp1109I	GCAGC	3 cut(s)	71, 252, 493
LweI	GCATC	2 cut(s)	415, 680
MabI	ACCWGGT	1 cut(s)	176
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	143, 162
MboI	GATC	2 cut(s)	141, 160
MboII	GAAGA	6 cut(s)	122, 440, 485, 793, 807, 856
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	2 cut(s)	150, 689
MluCI	AATT	5 cut(s)	322, 351, 553, 586, 650
MluNI	TGGCCA	2 cut(s)	150, 689
MnlI	CCTC	9 cut(s)	58, 87, 119, 131, 211, 268, 415, 469, 840
Mox20I	TGGCCA	2 cut(s)	150, 689
MroI	TCCGGA	1 cut(s)	111
MscI	TGGCCA	2 cut(s)	150, 689
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	2 cut(s)	150, 689
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	3 cut(s)	112, 386, 607
MspR9I	CCNGG	8 cut(s)	77, 171, 178, 200, 245, 338, 387, 576
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	7 cut(s)	77, 171, 178, 200, 245, 338, 576
MwoI	GCNNNNNNNGC	1 cut(s)	668
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	141, 160
NlaIII	CATG	3 cut(s)	310, 369, 398
NlaIV	GGNNCC	3 cut(s)	175, 257, 647
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	1 cut(s)	559
PasI	CCCWGGG	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	574
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	11, 857
PflMI	CCANNNNNTGG	1 cut(s)	556
PkrI	GCNGC	3 cut(s)	86, 242, 508
Psp6I	CCWGG	7 cut(s)	75, 169, 176, 198, 243, 336, 574
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	7 cut(s)	75, 169, 176, 198, 243, 336, 574
PspN4I	GGNNCC	3 cut(s)	175, 257, 647
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	175, 630, 833
RsaNI	GTAC	3 cut(s)	174, 629, 832
RseI	CAYNNNNRTG	1 cut(s)	311
SatI	GCNGC	3 cut(s)	85, 241, 507
Sau3AI	GATC	2 cut(s)	141, 160
ScaI	AGTACT	1 cut(s)	630
ScrFI	CCNGG	8 cut(s)	77, 171, 178, 200, 245, 338, 387, 576
SduI	GDGCHC	1 cut(s)	121
SexAI	ACCWGGT	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	415, 680
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	122, 599
SmoI	CTYRAG	2 cut(s)	122, 599
Sse9I	AATT	5 cut(s)	322, 351, 553, 586, 650
SseBI	AGGCCT	1 cut(s)	574
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	8 cut(s)	75, 169, 176, 198, 243, 336, 385, 574
StyI	CCWWGG	3 cut(s)	429, 617, 641
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	273
TasI	AATT	5 cut(s)	322, 351, 553, 586, 650
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	2 cut(s)	11, 857
TscAI	CASTG	2 cut(s)	151, 333
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	84, 240, 506
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	323, 862
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	151, 333
Van91I	CCANNNNNTGG	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	568
XapI	RAATTY	3 cut(s)	322, 553, 586
ZrmI	AGTACT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.