Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

3665925 .. 3667547

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G06599.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTTCCTCTTCCTCTTCTCCGACGCCTAGTGCTGCGGCGGCGGTCTCTCCTCTTACGGAGGAAGAATTAACTCTAACAGTTAAGTGGAATGGAAAAGAGTACACCGTCCGTATCTGTGCCGATGACTCAGTCGCCGAGCTAAAACGTCGCATCTGCCTTCTCACCACCGTTTTACCTAAACGCCAAAAGCTTCTTTATCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTTTACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGTACTGTTGAAGATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGTTGATGATTTTGAGCTTGGTAAGGAAGAAGCTGTTGATGTTAAAGATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAATTGATCAATACAAGATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTTTAGATATCGACTATACATTGTTCGATCATCGGTCCACCGCGGAGAATCCGTTGCAGCTTATGCGTCCTTATCTCCATGAGTTTCTTACTGCTGCTTATGCGGAATATGATATCATGATTTGGTCTGCTACCAGTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACAATCCTAACTACAAGGTCACGGCTCTTCTCGACCATCTTGCAATGATCACGGTCCAGTCAGACACTCGCGGGATTTTTGATTGCAAACCGCTAGGCTTAATTTGGGCACTACTTCCTGAGTTCTATAACCCTGGTAACACGATAATGTTTGATGACCTAAGGAGGAATTTCGTAATGAATCCTCAAAACGGTCTAACAATCAAGCCGTTTAGGAAAGCTCATGCAAATCGTGATACAGATCAAGAGCTTGTGAAGCTGACTCAGTACCTTCTGACAATAGCTGAGCTTAGTGATTTGAGTTCTCTACACCATAGCAGATGGGAATCATTCTCACAGGACAACGTCAAAAGGCGCAGACAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

340

Amino Acids

38.96

Weight (kDa)

6.35

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	26 - 78	5.1e-07	Ubiquitin family
NIF	PF03031	156 - 318	7.1e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	518, 726
AciI	CCGC	8 cut(s)	38, 41, 44, 516, 518, 578, 726, 746
AcsI	RAATTY	1 cut(s)	823
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	3 cut(s)	104, 289, 923
AfiI	CCNNNNNNNGG	2 cut(s)	209, 845
AgsI	TTSAA	2 cut(s)	296, 631
AjnI	CCWGG	1 cut(s)	787
Alw26I	GTCTC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	35, 532, 569
ApoI	RAATTY	1 cut(s)	823
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
AspLEI	GCGC	1 cut(s)	1011
AspS9I	GGNCC	2 cut(s)	510, 709
AsuHPI	GGTGA	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	442
AvaII	GGWCC	2 cut(s)	510, 709
AxyI	CCTNAGG	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	766
BbvI	GCAGC	3 cut(s)	22, 544, 556
BccI	CCATC	2 cut(s)	699, 969
BceAI	ACGGC	2 cut(s)	693, 847
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	1 cut(s)	789
BclI	TGATCA	2 cut(s)	421, 702
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	30, 749
BisI	GCNGC	5 cut(s)	36, 39, 42, 533, 570
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	5 cut(s)	37, 40, 43, 534, 571
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	2 cut(s)	510, 709
BmgT120I	GGNCC	2 cut(s)	510, 709
BmrFI	CCNGG	1 cut(s)	789
BmsI	GCATC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	2 cut(s)	894, 979
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	516, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 845
Bse1I	ACTGG	2 cut(s)	609, 712
Bse21I	CCTNAGG	1 cut(s)	815
Bse3DI	GCAATG	1 cut(s)	705
Bse8I	GATNNNNATC	2 cut(s)	894, 979
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	2 cut(s)	516, 787
BseJI	GATNNNNATC	2 cut(s)	894, 979
BseLI	CCNNNNNNNGG	2 cut(s)	209, 845
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	4 cut(s)	144, 765, 930, 932
BseNI	ACTGG	2 cut(s)	609, 712
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	3 cut(s)	22, 544, 556
BseYI	CCCAGC	1 cut(s)	643
Bsh1236I	CGCG	2 cut(s)	518, 726
BslI	CCNNNNNNNGG	2 cut(s)	209, 845
BsmAI	GTCTC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
Bsp1720I	GCTNAGC	1 cut(s)	939
BspACI	CCGC	8 cut(s)	38, 41, 44, 516, 518, 578, 726, 746
BspCNI	CTCAG	4 cut(s)	143, 766, 931, 931
BspFNI	CGCG	2 cut(s)	518, 726
BspHI	TCATGA	1 cut(s)	591
BspQI	GCTCTTC	1 cut(s)	687
BspT104I	TTCGAA	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	2 cut(s)	609, 712
BssECI	CCNNGG	2 cut(s)	516, 787
BssMI	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	6 cut(s)	82, 109, 172, 292, 709, 848
Bst6I	CTCTTC	4 cut(s)	16, 22, 250, 687
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstBI	TTCGAA	1 cut(s)	442
BstDEI	CTNAG	6 cut(s)	130, 774, 815, 918, 939, 944
BstDSI	CCRYGG	1 cut(s)	516
BstFNI	CGCG	2 cut(s)	518, 726
BstHHI	GCGC	1 cut(s)	1011
BstKTI	GATC	8 cut(s)	210, 252, 285, 316, 424, 505, 705, 898
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 538, 575, 649, 910
BstNI	CCWGG	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	787
BstSLI	GKGCMC	1 cut(s)	766
BstUI	CGCG	2 cut(s)	518, 726
BstV1I	GCAGC	3 cut(s)	22, 544, 556
Bsu36I	CCTNAGG	1 cut(s)	815
BtgI	CCRYGG	1 cut(s)	516
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	1 cut(s)	1011
Cfr13I	GGNCC	2 cut(s)	510, 709
Cfr42I	CCGCGG	1 cut(s)	519
CseI	GACGC	2 cut(s)	34, 530
Csp6I	GTAC	3 cut(s)	103, 288, 922
CviAII	CATG	4 cut(s)	450, 554, 592, 878
CviQI	GTAC	3 cut(s)	103, 288, 922
DdeI	CTNAG	6 cut(s)	130, 774, 815, 918, 939, 944
DpnI	GATC	8 cut(s)	209, 251, 284, 315, 423, 504, 704, 897
DpnII	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
Eam1104I	CTCTTC	4 cut(s)	16, 22, 250, 687
EarI	CTCTTC	4 cut(s)	16, 22, 250, 687
Eco31I	GGTCTC	1 cut(s)	52
Eco32I	GATATC	2 cut(s)	484, 589
Eco47I	GGWCC	2 cut(s)	510, 709
Eco81I	CCTNAGG	1 cut(s)	815
EcoRII	CCWGG	1 cut(s)	787
EcoRV	GATATC	2 cut(s)	484, 589
FaeI	CATG	4 cut(s)	453, 557, 595, 881
FatI	CATG	4 cut(s)	449, 553, 591, 877
FauI	CCCGC	1 cut(s)	719
FbaI	TGATCA	2 cut(s)	421, 702
Fnu4HI	GCNGC	5 cut(s)	36, 39, 42, 533, 570
Fsp4HI	GCNGC	5 cut(s)	36, 39, 42, 533, 570
FspBI	CTAG	2 cut(s)	30, 749
GlaI	GCGC	1 cut(s)	1010
GluI	GCNGC	5 cut(s)	36, 39, 42, 533, 570
GsaI	CCCAGC	1 cut(s)	647
HgaI	GACGC	2 cut(s)	34, 530
HhaI	GCGC	1 cut(s)	1011
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	453, 557, 595, 881
Hin6I	GCGC	1 cut(s)	1009
HinP1I	GCGC	1 cut(s)	1009
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	7 cut(s)	128, 230, 323, 523, 835, 916, 980
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	105, 513
Hpy188I	TCNGA	5 cut(s)	24, 212, 226, 718, 930
Hpy188III	TCNNGA	7 cut(s)	271, 329, 592, 686, 773, 887, 899
Hpy8I	GTNNAC	2 cut(s)	105, 513
Hpy99I	CGWCG	2 cut(s)	28, 153
HpyAV	CCTTC	2 cut(s)	170, 935
HpyCH4III	ACNGT	6 cut(s)	82, 109, 172, 292, 709, 848
HpyCH4IV	ACGT	2 cut(s)	148, 999
HpyCH4V	TGCA	4 cut(s)	532, 698, 741, 881
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 538, 575, 649, 910
HpyF3I	CTNAG	6 cut(s)	130, 774, 815, 918, 939, 944
HpySE526I	ACGT	2 cut(s)	148, 999
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	453, 557, 595, 881
HspAI	GCGC	1 cut(s)	1009
Ksp22I	TGATCA	2 cut(s)	421, 702
KspI	CCGCGG	1 cut(s)	519
Kzo9I	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
LguI	GCTCTTC	1 cut(s)	687
LpnPI	CCDG	9 cut(s)	342, 622, 629, 725, 774, 786, 801, 977, 1001
Lsp1109I	GCAGC	3 cut(s)	22, 544, 556
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	30, 749
MaeII	ACGT	2 cut(s)	148, 999
MaeIII	GTNAC	2 cut(s)	673, 791
MalI	GATC	8 cut(s)	209, 251, 284, 315, 423, 504, 704, 897
MboI	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	5 cut(s)	68, 333, 417, 756, 823
MlyI	GAGTC	2 cut(s)	122, 910
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	19, 25, 55, 63, 274, 278, 813, 849
MseI	TTAA	6 cut(s)	71, 84, 258, 378, 393, 755
MslI	CAYNNNNRTG	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	789
MvnI	CGCG	2 cut(s)	518, 726
MwoI	GCNNNNNNNGC	5 cut(s)	41, 538, 575, 649, 910
NdeII	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
NlaIII	CATG	4 cut(s)	453, 557, 595, 881
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	442
PagI	TCATGA	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	687
PfeI	GAWTC	5 cut(s)	230, 323, 523, 835, 980
PflFI	GACNNNGTC	2 cut(s)	131, 998
PkrI	GCNGC	5 cut(s)	37, 40, 43, 534, 571
PleI	GAGTC	2 cut(s)	122, 910
PpsI	GAGTC	2 cut(s)	122, 910
Psp6I	CCWGG	1 cut(s)	787
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	787
PspPI	GGNCC	2 cut(s)	510, 709
PsyI	GACNNNGTC	2 cut(s)	131, 998
RsaI	GTAC	3 cut(s)	104, 289, 923
RsaNI	GTAC	3 cut(s)	103, 288, 922
RseI	CAYNNNNRTG	1 cut(s)	800
SacII	CCGCGG	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	6 cut(s)	71, 84, 258, 378, 393, 755
SatI	GCNGC	5 cut(s)	36, 39, 42, 533, 570
Sau3AI	GATC	8 cut(s)	207, 249, 282, 313, 421, 502, 702, 895
Sau96I	GGNCC	2 cut(s)	510, 709
SchI	GAGTC	2 cut(s)	122, 910
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	1 cut(s)	766
SfaNI	GCATC	1 cut(s)	162
Sfr303I	CCGCGG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	442
SgrBI	CCGCGG	1 cut(s)	519
SinI	GGWCC	2 cut(s)	510, 709
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	68, 333, 417, 756, 823
SsiI	CCGC	8 cut(s)	38, 41, 44, 516, 518, 578, 726, 746
SspMI	CTAG	2 cut(s)	30, 749
StyD4I	CCNGG	1 cut(s)	787
TaaI	ACNGT	6 cut(s)	82, 109, 172, 292, 709, 848
TaiI	ACGT	2 cut(s)	151, 1002
TaqI	TCGA	5 cut(s)	248, 442, 486, 501, 687
TaqII	GACCGA	1 cut(s)	498
TasI	AATT	5 cut(s)	68, 333, 417, 756, 823
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	2 cut(s)	41, 44
TfiI	GAWTC	5 cut(s)	230, 323, 523, 835, 980
Tru1I	TTAA	6 cut(s)	71, 84, 258, 378, 393, 755
Tru9I	TTAA	6 cut(s)	71, 84, 258, 378, 393, 755
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	3 cut(s)	35, 532, 569
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	2 cut(s)	629, 848
TspGWI	ACGGA	3 cut(s)	74, 101, 516
Tth111I	GACNNNGTC	2 cut(s)	131, 998
VpaK11BI	GGWCC	2 cut(s)	510, 709
XapI	RAATTY	1 cut(s)	823
XspI	CTAG	2 cut(s)	30, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.