Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Forward (+)

32733516 .. 32738954

Gene Structure 5439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G016540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCCCAAACCCCAAAAGCTTCTCTACCCCAAACTCCTCCCTTCCAAACTCGCCGACGACGCTGTTTTGCTCTCCTCTCTCCCTTTCAAGTCCTCAATCAAATTGACCATGATGGGTTCTATGGAGAATGATATTATAGTGGATTGGAAGGTTAATGCGTTTAGGGTTTTGGGCAAATCCGAAGAGGTTTGGATGGTGATCTTGGTGGTTTATGATTTCGGGTGTGAAGTAGAAAGAGGTGGGAAGAAAAGAACAGGAAAAAAAAAAACAAAAGAACCCATTTTCAAGAACAAATTTTTAGTTTTGGTATCAGAGCCAAACAAAGAAGTGCGGAAGCTATTAGTCAACTATGCCTCGAACCATGTACGCCCGACCTCAACTAATAACGCCTGCAAACTGGGCATTAGAAACCAAAAGGCTCCACTCACAGTACTGGTTGGCGACCACGCAACCGAGTTCCTTCATCAAGCGGTAGCTCGATATATCGTCCTGTACACAAGTTGGGTAGGAGTAGAGGAGTCCAACGGTGCCACTCGTTCGTCCCCAGTCAAGTTTTTAGGAAGAGGGTGTGTGGAGTGTTTTCCCAACCCTATCGAACCAGTTTCAATTCTTTCTGAATTTCATTTCAATGTCTGTTTTCATTTATCTGGTAAGAAACCCTTTTCCCCTGCTCTGTTGGGTTTCTCAGAAAAGCTGAAATCATTAAATTCTGGAAAATGGGTACTAGAAAATCGTGTTGCTTTGATTGAAATTGCTCGGAAACTCGGGGATTTATCTAATTTTCTTCATTGGCTTTTCAGGGTTCAGGGAATGTGCATTCGAATTCTAGATCTTGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

280

Amino Acids

31.56

Weight (kDa)

9.54

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	527
AciI	CCGC	2 cut(s)	331, 470
AcsI	RAATTY	4 cut(s)	293, 617, 706, 822
AfaI	GTAC	4 cut(s)	366, 432, 494, 723
AgsI	TTSAA	5 cut(s)	88, 286, 606, 628, 749
AluBI	AGCT	5 cut(s)	19, 337, 476, 694, 838
AluI	AGCT	5 cut(s)	19, 337, 476, 694, 838
Ama87I	CYCGRG	1 cut(s)	764
ApoI	RAATTY	4 cut(s)	293, 617, 706, 822
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	820
AvaI	CYCGRG	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	527
BccI	CCATC	2 cut(s)	106, 187
BfaI	CTAG	2 cut(s)	725, 827
BglII	AGATCT	1 cut(s)	829
BmcAI	AGTACT	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	764
BmiI	GGNNCC	2 cut(s)	420, 529
BmrI	ACTGGG	2 cut(s)	407, 539
BmuI	ACTGGG	2 cut(s)	407, 539
Bpu14I	TTCGAA	1 cut(s)	820
BsaBI	GATNNNNATC	1 cut(s)	197
Bse1I	ACTGG	4 cut(s)	402, 438, 545, 599
Bse8I	GATNNNNATC	1 cut(s)	197
BseGI	GGATG	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	4 cut(s)	402, 438, 545, 599
BseRI	GAGGAG	3 cut(s)	26, 64, 530
BshNI	GGYRCC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	816
BsoBI	CYCGRG	1 cut(s)	764
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	198, 829
BspACI	CCGC	2 cut(s)	331, 470
BspCNI	CTCAG	1 cut(s)	698
BspLI	GGNNCC	2 cut(s)	420, 529
BspT104I	TTCGAA	1 cut(s)	820
BspT107I	GGYRCC	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	4 cut(s)	402, 438, 545, 599
BssMI	GATC	2 cut(s)	198, 829
Bst4CI	ACNGT	2 cut(s)	430, 527
Bst6I	CTCTTC	2 cut(s)	177, 556
BstAUI	TGTACA	1 cut(s)	492
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	685
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	201, 832
BstMBI	GATC	2 cut(s)	198, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 399
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	391
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	4 cut(s)	365, 431, 493, 722
CviAII	CATG	2 cut(s)	109, 362
CviJI	RGCY	8 cut(s)	19, 316, 337, 419, 476, 694, 793, 838
CviKI_1	RGCY	8 cut(s)	19, 316, 337, 419, 476, 694, 793, 838
CviQI	GTAC	4 cut(s)	365, 431, 493, 722
DdeI	CTNAG	1 cut(s)	685
DpnI	GATC	2 cut(s)	200, 831
DpnII	GATC	2 cut(s)	198, 829
Eam1104I	CTCTTC	2 cut(s)	177, 556
EarI	CTCTTC	2 cut(s)	177, 556
Eco88I	CYCGRG	1 cut(s)	764
EcoRI	GAATTC	1 cut(s)	822
FaeI	CATG	2 cut(s)	112, 365
FaiI	YATR	7 cut(s)	110, 122, 137, 213, 351, 363, 483
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	2 cut(s)	108, 361
FokI	GGATG	1 cut(s)	205
FspBI	CTAG	2 cut(s)	725, 827
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	112, 365
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	518
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	346, 495
Hpy188I	TCNGA	5 cut(s)	181, 313, 616, 688, 759
Hpy188III	TCNNGA	4 cut(s)	286, 711, 827, 833
Hpy8I	GTNNAC	2 cut(s)	346, 495
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	3 cut(s)	51, 142, 470
HpyCH4III	ACNGT	2 cut(s)	430, 527
HpyCH4V	TGCA	2 cut(s)	393, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 399
HpyF3I	CTNAG	1 cut(s)	685
Hsp92II	CATG	2 cut(s)	112, 365
Kzo9I	GATC	2 cut(s)	198, 829
LmnI	GCTCC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	725, 827
MalI	GATC	2 cut(s)	200, 831
MboI	GATC	2 cut(s)	198, 829
MboII	GAAGA	4 cut(s)	194, 256, 573, 776
MflI	RGATCY	1 cut(s)	829
MluCI	AATT	8 cut(s)	101, 293, 606, 617, 706, 750, 778, 822
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	9 cut(s)	47, 85, 103, 178, 230, 364, 385, 508, 557
MseI	TTAA	2 cut(s)	153, 704
MslI	CAYNNNNRTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	816
MwoI	GCNNNNNNNGC	2 cut(s)	59, 399
NdeII	GATC	2 cut(s)	198, 829
NlaIII	CATG	2 cut(s)	112, 365
NlaIV	GGNNCC	2 cut(s)	420, 529
NspV	TTCGAA	1 cut(s)	820
PctI	GAATGC	1 cut(s)	816
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	420, 529
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	4 cut(s)	366, 432, 494, 723
RsaNI	GTAC	4 cut(s)	365, 431, 493, 722
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	153, 704
Sau3AI	GATC	2 cut(s)	198, 829
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	1 cut(s)	527
SetI	ASST	9 cut(s)	21, 153, 189, 241, 339, 377, 478, 696, 840
SfuI	TTCGAA	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	8 cut(s)	101, 293, 606, 617, 706, 750, 778, 822
SsiI	CCGC	2 cut(s)	331, 470
SspMI	CTAG	2 cut(s)	725, 827
TaaI	ACNGT	2 cut(s)	430, 527
TaqI	TCGA	4 cut(s)	356, 478, 594, 820
TasI	AATT	8 cut(s)	101, 293, 606, 617, 706, 750, 778, 822
TatI	WGTACW	2 cut(s)	430, 492
Tru1I	TTAA	2 cut(s)	153, 704
Tru9I	TTAA	2 cut(s)	153, 704
TspDTI	ATGAA	4 cut(s)	452, 611, 629, 776
XapI	RAATTY	4 cut(s)	293, 617, 706, 822
XbaI	TCTAGA	1 cut(s)	826
XspI	CTAG	2 cut(s)	725, 827
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.