Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

46913355 .. 46917507

Gene Structure 4153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G576000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAATGGCAATGGCAGGAGTAGGTGTAGGCTCAACCTCAACGACGTCGTTGCCGGAGGAGGAGATAACACTGACAGTGAAGTGGAGCGGGAAGGAGTATACGGTTCGCGTATGCGGGGACGACACGGTGGGCGAGCTCAAGCGCCGAATCTGCCAAGCCACCGACGTCTTGCCCAAACGTCAAAAGCTTCTCTACCCAAAAATCCTCCCTTCAAAGCTCGCCGACGACGCCGTTTTGCTCTCCTCTGTCCCCTTCAAGTCCTCCCTCAAAATGACCATGATTGGTACTACGGAGGATGACATTATAGTGGATCAAGTGGAGTCTCCAGACATTGTTGATGATTTTGAGCTTCCCCAAGATGAGGCTGTTGAAATTAAAGATAAACATGGCAATAAGCAGAAGTTGAGGAGGCGTATAAGTCAGTACAAGATTGAACTTCGGAATCCATGCCGGGAAGGAAAGAAACTGCTTGTGCTGGATATTGATTATACTCTATTTGATCACCGGTCCCCAGCAGAGAACCCACTTCAGCTTATGCGGCCTTTTCTTCATGAGTTTCTTGCAGCTGCCTATGCTGAATACGATATCATGATATGGTCTGCAACCAGCATGAAATGGGTTGAATTGAAGATGGCTGAGCTTGGTGTACTCAGCAACCCCAACTACAAAATCACAGCTCTTCTAGACCATTTAGCAATGATCACAGTTCAATCAGAAACTCGTGGGATCTTTGATTGCAAGCCGTTAGGCTTGATCTGGGCTCAATTCCCTGAGTTCTACAGTTCAAAAAACACTATAATGTTTGATGATCTGCGAAGGAATTTTGTGATGAACCCTCAAAATGGCTTAACCATCAAGCCATTCAAGAGGGCTCATTCTAGCCGAGACAGTGATCAGGAGCTTAGGAAACTCACAACATACTTGCTTGCCATTGCGGAACTTGATGACTTGAGCACCCTTGATCATAATAACTGGCAGTCATTTAGTGAGGACAATGTCAAAAGACGTCGGCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

341

Amino Acids

38.93

Weight (kDa)

6.04

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	50, 171, 1012
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	101
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	90, 117, 541, 938
AclWI	GGATC	2 cut(s)	321, 737
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	1 cut(s)	515
AcyI	GRCGYC	4 cut(s)	47, 168, 231, 1009
AfaI	GTAC	3 cut(s)	289, 428, 651
AfiI	CCNNNNNNNGG	2 cut(s)	364, 845
AgeI	ACCGGT	1 cut(s)	507
AgsI	TTSAA	9 cut(s)	216, 259, 374, 437, 626, 631, 713, 789, 868
AluBI	AGCT	9 cut(s)	139, 190, 220, 352, 535, 569, 643, 680, 904
AluI	AGCT	9 cut(s)	139, 190, 220, 352, 535, 569, 643, 680, 904
Alw21I	GWGCWC	2 cut(s)	141, 959
Alw26I	GTCTC	2 cut(s)	330, 882
AlwI	GGATC	2 cut(s)	321, 737
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	2 cut(s)	566, 569
ApoI	RAATTY	1 cut(s)	823
AsiGI	ACCGGT	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	510
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	510
BanII	GRGCYC	3 cut(s)	141, 766, 877
BauI	CACGAG	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	141, 959
BbvI	GCAGC	2 cut(s)	556, 578
BccI	CCATC	2 cut(s)	628, 863
BceAI	ACGGC	2 cut(s)	218, 730
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BclI	TGATCA	4 cut(s)	502, 702, 895, 964
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	330, 882
BfaI	CTAG	2 cut(s)	686, 882
BfmI	CTRYAG	1 cut(s)	781
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	3 cut(s)	542, 567, 570
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	3 cut(s)	543, 568, 571
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	905
Bpu1102I	GCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	2 cut(s)	125, 973
BpuMI	CCSGG	1 cut(s)	455
BsaHI	GRCGYC	4 cut(s)	47, 168, 231, 1009
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 845
Bse118I	RCCGGY	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	980
Bse3DI	GCAATG	4 cut(s)	12, 18, 705, 933
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	364, 845
BseMI	GCAATG	4 cut(s)	12, 18, 705, 933
BseMII	CTCAG	3 cut(s)	630, 667, 765
BseNI	ACTGG	1 cut(s)	980
BseRI	GAGGAG	4 cut(s)	74, 77, 235, 424
BseXI	GCAGC	2 cut(s)	556, 578
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	544
BshTI	ACCGGT	1 cut(s)	507
BsiHKAI	GWGCWC	2 cut(s)	141, 959
BsiSI	CCGG	3 cut(s)	56, 454, 508
BslFI	GGGAC	3 cut(s)	134, 236, 496
BslI	CCNNNNNNNGG	2 cut(s)	364, 845
BsmAI	GTCTC	2 cut(s)	330, 882
BsmFI	GGGAC	3 cut(s)	134, 236, 496
BsnI	GGCC	1 cut(s)	544
Bsp1286I	GDGCHC	4 cut(s)	141, 766, 877, 959
Bsp143I	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	4 cut(s)	90, 117, 541, 938
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	3 cut(s)	631, 666, 766
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	2 cut(s)	553, 591
BspLI	GGNNCC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	321, 737
BspQI	GCTCTTC	1 cut(s)	687
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	4 cut(s)	12, 18, 705, 933
BsrFI	RCCGGY	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	980
BssAI	RCCGGY	1 cut(s)	507
BssMI	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
BssNAI	GTATAC	1 cut(s)	102
BssNI	GRCGYC	4 cut(s)	47, 168, 231, 1009
BssSI	CACGAG	1 cut(s)	723
Bst1107I	GTATAC	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	723
Bst4CI	ACNGT	6 cut(s)	79, 106, 130, 709, 785, 893
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	4 cut(s)	47, 168, 231, 1009
BstC8I	GCNNGC	4 cut(s)	137, 222, 743, 930
BstDEI	CTNAG	4 cut(s)	639, 653, 774, 905
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	8 cut(s)	316, 505, 705, 732, 759, 814, 898, 967
BstMAI	GTCTC	2 cut(s)	330, 882
BstMBI	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 230, 541, 575
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	781
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	556, 578
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
BstZ17I	GTATAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	3 cut(s)	71, 84, 898
Cac8I	GCNNGC	4 cut(s)	137, 222, 743, 930
CciI	TCATGA	2 cut(s)	553, 591
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	510
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	288, 427, 650
CspAI	ACCGGT	1 cut(s)	507
CviAII	CATG	6 cut(s)	280, 389, 450, 554, 592, 613
CviQI	GTAC	3 cut(s)	288, 427, 650
DdeI	CTNAG	4 cut(s)	639, 653, 774, 905
DpnI	GATC	8 cut(s)	315, 504, 704, 731, 758, 813, 897, 966
DpnII	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	3 cut(s)	141, 766, 877
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	589
EcoT38I	GRGCYC	3 cut(s)	141, 766, 877
FaeI	CATG	6 cut(s)	283, 392, 453, 557, 595, 616
FaqI	GGGAC	3 cut(s)	134, 236, 496
FatI	CATG	6 cut(s)	279, 388, 449, 553, 591, 612
FauI	CCCGC	2 cut(s)	83, 110
FbaI	TGATCA	4 cut(s)	502, 702, 895, 964
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	542, 567, 570
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	3 cut(s)	141, 766, 877
Fsp4HI	GCNGC	3 cut(s)	542, 567, 570
FspBI	CTAG	2 cut(s)	686, 882
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	542, 567, 570
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	3 cut(s)	56, 454, 508
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	4 cut(s)	47, 168, 231, 1009
Hin1II	CATG	6 cut(s)	283, 392, 453, 557, 595, 616
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	150, 323, 445
HpaII	CCGG	3 cut(s)	56, 454, 508
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	2 cut(s)	102, 650
Hpy188I	TCNGA	2 cut(s)	444, 718
Hpy188III	TCNNGA	6 cut(s)	329, 554, 592, 686, 868, 899
Hpy8I	GTNNAC	2 cut(s)	102, 650
Hpy99I	CGWCG	6 cut(s)	49, 52, 170, 230, 233, 1014
HpyAV	CCTTC	5 cut(s)	88, 222, 265, 452, 813
HpyCH4III	ACNGT	6 cut(s)	79, 106, 130, 709, 785, 893
HpyCH4IV	ACGT	4 cut(s)	47, 168, 181, 1009
HpyCH4V	TGCA	3 cut(s)	566, 605, 741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 230, 541, 575
HpyF3I	CTNAG	4 cut(s)	639, 653, 774, 905
HpySE526I	ACGT	4 cut(s)	47, 168, 181, 1009
Hsp92I	GRCGYC	4 cut(s)	47, 168, 231, 1009
Hsp92II	CATG	6 cut(s)	283, 392, 453, 557, 595, 616
HspAI	GCGC	1 cut(s)	145
Ksp22I	TGATCA	4 cut(s)	502, 702, 895, 964
Kzo9I	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	2 cut(s)	87, 901
Lsp1109I	GCAGC	2 cut(s)	556, 578
MaeI	CTAG	2 cut(s)	686, 882
MaeII	ACGT	4 cut(s)	47, 168, 181, 1009
MalI	GATC	8 cut(s)	315, 504, 704, 731, 758, 813, 897, 966
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
MboII	GAAGA	3 cut(s)	542, 643, 674
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	4 cut(s)	141, 766, 877, 959
MluCI	AATT	4 cut(s)	375, 626, 767, 823
MlyI	GAGTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	378, 851
MslI	CAYNNNNRTG	2 cut(s)	308, 800
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	3 cut(s)	56, 454, 508
MspR9I	CCNGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	153, 230, 541, 575
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
NlaIII	CATG	6 cut(s)	283, 392, 453, 557, 595, 616
NlaIV	GGNNCC	1 cut(s)	512
NmeAIII	GCCGAG	1 cut(s)	911
PagI	TCATGA	2 cut(s)	553, 591
PciSI	GCTCTTC	1 cut(s)	687
PfeI	GAWTC	2 cut(s)	150, 445
PflFI	GACNNNGTC	1 cut(s)	998
PinAI	ACCGGT	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	543, 568, 571
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	729
PsyI	GACNNNGTC	1 cut(s)	998
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	3 cut(s)	289, 428, 651
RsaNI	GTAC	3 cut(s)	288, 427, 650
RseI	CAYNNNNRTG	2 cut(s)	308, 800
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	378, 851
SatI	GCNGC	3 cut(s)	542, 567, 570
Sau3AI	GATC	8 cut(s)	313, 502, 702, 729, 756, 811, 895, 964
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	4 cut(s)	141, 766, 877, 959
SfcI	CTRYAG	1 cut(s)	781
SinI	GGWCC	1 cut(s)	510
SmiMI	CAYNNNNRTG	2 cut(s)	308, 800
SmlI	CTYRAG	2 cut(s)	140, 952
SmoI	CTYRAG	2 cut(s)	140, 952
Sse9I	AATT	4 cut(s)	375, 626, 767, 823
SsiI	CCGC	4 cut(s)	90, 117, 541, 938
SspMI	CTAG	2 cut(s)	686, 882
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	6 cut(s)	79, 106, 130, 709, 785, 893
TaiI	ACGT	4 cut(s)	50, 171, 184, 1012
TasI	AATT	4 cut(s)	375, 626, 767, 823
TatI	WGTACW	2 cut(s)	426, 649
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	2 cut(s)	150, 445
Tru1I	TTAA	2 cut(s)	378, 851
Tru9I	TTAA	2 cut(s)	378, 851
TscAI	CASTG	3 cut(s)	78, 84, 898
TseI	GCWGC	2 cut(s)	566, 569
TspDTI	ATGAA	3 cut(s)	542, 629, 848
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	78, 84, 898
Tth111I	GACNNNGTC	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	823
XbaI	TCTAGA	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	2 cut(s)	686, 882
ZraI	GACGTC	3 cut(s)	48, 169, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.